Wall clock time and date at job start Tue Mar 31 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46536 * 2 1 4 4 C 1.46504 * 120.00050 * 269.99540 * 3 2 1 5 5 C 1.50705 * 109.46863 * 270.00602 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99726 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00239 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99920 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47193 * 90.00028 * 9 7 5 11 11 H 1.48503 * 109.47046 * 209.99925 * 9 7 5 12 12 H 1.48498 * 109.47336 * 330.00089 * 9 7 5 13 13 C 1.34784 * 120.00173 * 90.00246 * 3 2 1 14 14 O 1.21273 * 119.99901 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99664 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.46808 * 180.02562 * 15 13 3 17 17 C 1.46905 * 111.00138 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47028 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47486 * 64.99811 * 18 17 16 20 20 C 1.53006 * 109.46623 * 184.99640 * 18 17 16 21 21 N 1.46500 * 109.46944 * 304.99380 * 18 17 16 22 22 C 1.34781 * 119.99732 * 155.00564 * 21 18 17 23 23 O 1.21566 * 119.99841 * 359.97438 * 22 21 18 24 24 C 1.47712 * 119.99904 * 179.97438 * 22 21 18 25 25 C 1.41498 * 126.51655 * 179.97438 * 24 22 21 26 26 C 1.35365 * 105.50253 * 180.02562 * 25 24 22 27 27 N 1.35034 * 107.22705 * 0.02562 * 26 25 24 28 28 H 0.97003 * 124.88260 * 180.02562 * 27 26 25 29 29 N 1.28469 * 110.23217 * 359.72082 * 27 26 25 30 30 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47715 * 300.00039 * 1 2 3 32 32 H 1.09005 * 109.47186 * 60.00702 * 1 2 3 33 33 H 1.08991 * 109.47274 * 240.00081 * 2 1 3 34 34 H 1.09001 * 109.46727 * 119.99146 * 2 1 3 35 35 H 1.08993 * 109.46986 * 30.00110 * 4 3 2 36 36 H 1.08992 * 109.47251 * 150.00593 * 4 3 2 37 37 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47530 * 60.00377 * 15 13 3 39 39 H 1.09004 * 109.46769 * 300.00021 * 15 13 3 40 40 H 1.00906 * 110.99758 * 303.95061 * 16 15 13 41 41 H 1.08994 * 109.47305 * 59.99331 * 17 16 15 42 42 H 1.08998 * 109.46287 * 299.99779 * 17 16 15 43 43 H 1.09001 * 109.47002 * 179.97438 * 20 18 17 44 44 H 1.08993 * 109.46955 * 300.00075 * 20 18 17 45 45 H 1.09000 * 109.47050 * 59.99904 * 20 18 17 46 46 H 0.96998 * 120.00364 * 335.00076 * 21 18 17 47 47 H 1.08001 * 127.24986 * 0.02562 * 25 24 22 48 48 H 1.08006 * 126.38441 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 5.3912 2.1835 -3.2573 9 14 3.0123 3.4340 -3.9299 10 1 3.1146 4.8546 -3.5092 11 1 3.4059 3.3107 -5.3565 12 1 1.6129 2.9671 -3.7603 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0756 1.5463 4.8802 18 6 2.4173 2.5127 6.0161 19 1 1.7279 3.3566 5.9951 20 6 2.2942 1.7869 7.3575 21 7 3.7892 2.9984 5.8479 22 6 4.1539 4.1837 6.3759 23 8 3.3443 4.8498 6.9913 24 6 5.5372 4.6733 6.2068 25 6 6.0660 5.8897 6.6995 26 6 7.3601 5.9086 6.3028 27 7 7.5840 4.7689 5.6142 28 1 8.4317 4.5204 5.2133 29 7 6.5148 4.0580 5.5719 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 1.5817 1.6877 -2.0284 36 1 2.0954 3.1410 -1.1385 37 1 5.7171 2.5734 -4.0836 38 1 2.6211 0.4188 2.5303 39 1 0.9431 1.0126 2.5298 40 1 3.2573 2.5447 3.5221 41 1 2.7067 0.6608 4.9548 42 1 1.0284 1.2535 4.9545 43 1 2.5381 2.4751 8.1667 44 1 1.2736 1.4254 7.4825 45 1 2.9837 0.9429 7.3785 46 1 4.4351 2.4671 5.3566 47 1 5.5466 6.6442 7.2716 48 1 8.0792 6.6901 6.4997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001367655545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:49 Heat of formation + Delta-G solvation = -20.984876 kcal Electronic energy + Delta-G solvation = -29152.048299 eV Core-core repulsion = 25049.665865 eV Total energy + Delta-G solvation = -4102.382434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.57916 -40.88992 -40.54882 -37.93666 -36.95050 -35.33132 -34.79047 -33.21322 -32.10764 -31.84699 -31.27677 -30.06235 -28.22090 -25.73775 -25.08286 -24.34006 -23.48427 -22.73414 -21.91174 -21.27059 -19.93378 -19.46649 -19.11369 -18.35273 -17.91320 -17.33447 -17.19844 -16.84761 -16.70830 -16.31874 -15.77734 -15.45726 -15.20947 -15.08900 -14.78330 -14.68108 -14.63968 -14.51014 -14.20992 -13.97859 -13.79406 -13.45554 -13.32527 -13.24486 -13.11019 -12.89966 -12.71220 -12.53971 -12.35412 -12.05129 -12.03384 -11.92766 -11.87654 -11.75212 -11.27215 -10.84682 -10.63894 -10.52064 -10.17657 -10.09030 -9.42524 -9.36964 -8.35833 -6.40072 0.51625 1.22456 1.30337 1.34705 1.42715 1.83678 1.90713 2.21672 2.29087 2.30583 2.37278 2.98734 3.15173 3.44568 3.70663 3.82408 4.05117 4.10893 4.20206 4.22580 4.30412 4.37840 4.40342 4.48208 4.65420 4.68333 4.72032 4.74523 4.75572 4.79612 4.80819 4.91466 5.02156 5.03406 5.07314 5.28737 5.33184 5.40872 5.46716 5.48713 5.66143 5.90771 6.12831 6.21663 6.23998 6.40723 6.60658 6.75543 6.85739 7.14087 7.21116 7.47085 8.81000 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.002964 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.823545 B = 9443.572093 C =11589.235399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.534 4.534 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.058 3.942 16 N -0.694 5.694 17 C 0.058 3.942 18 C 0.142 3.858 19 H 0.073 0.927 20 C -0.152 4.152 21 N -0.704 5.704 22 C 0.603 3.397 23 O -0.569 6.569 24 C -0.045 4.045 25 C -0.210 4.210 26 C 0.012 3.988 27 N -0.370 5.370 28 H 0.463 0.537 29 N -0.278 5.278 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.339 0.661 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.408 0.592 47 H 0.165 0.835 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -3.805 21.437 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.163 1.163 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.074 4.074 16 N -0.326 5.326 17 C -0.071 4.071 18 C 0.037 3.963 19 H 0.091 0.909 20 C -0.211 4.211 21 N -0.355 5.355 22 C 0.388 3.612 23 O -0.447 6.447 24 C -0.205 4.205 25 C -0.239 4.239 26 C -0.132 4.132 27 N -0.086 5.086 28 H 0.311 0.689 29 N -0.116 5.116 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.243 0.757 47 H 0.182 0.818 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.207 -3.415 21.126 21.639 hybrid contribution 1.567 0.593 -0.918 1.910 sum -1.641 -2.822 20.209 20.471 Atomic orbital electron populations 1.22162 0.94009 1.03646 1.02058 1.21785 0.95599 0.80992 1.04009 1.48067 1.64385 1.15227 1.05663 1.19248 0.94785 0.92831 0.82780 1.21560 0.97039 1.32005 1.06619 0.95169 1.25806 0.96668 0.97126 0.98950 1.70035 1.17293 1.46622 1.24482 0.85761 0.80554 0.78978 0.77940 1.20488 1.19785 1.16283 1.21358 0.77102 0.86678 0.86683 1.90650 1.47439 1.20663 1.87908 1.21854 1.04779 0.93934 0.86839 1.60097 1.32350 1.38649 1.01543 1.22387 1.04040 0.94641 0.85983 1.21159 0.82160 0.97304 0.95631 0.90871 1.22073 1.04011 1.00214 0.94757 1.45885 1.13803 1.20339 1.55472 1.17118 0.85068 0.80857 0.78136 1.90740 1.52478 1.57920 1.43542 1.22031 0.94290 0.97942 1.06245 1.22072 0.95361 0.98918 1.07508 1.23603 0.98528 0.92965 0.98133 1.43524 1.11253 1.14329 1.39515 0.68929 1.73470 0.94551 1.23096 1.20495 0.88634 0.91867 0.93810 0.91084 0.88325 0.93539 0.96925 0.92283 0.90227 0.85303 0.84242 0.92304 0.86919 0.93613 0.89080 0.91070 0.75674 0.81777 0.75042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.67 16 2 C 0.10 2.75 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.22 2.46 -826.17 -2.03 -26.25 16 4 C 0.23 11.22 4.23 85.63 0.36 11.58 16 5 C -0.53 -31.68 9.94 25.60 0.25 -31.43 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 7 C 0.01 0.75 5.47 84.66 0.46 1.21 16 8 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 9 Si 0.94 45.24 27.47 68.60 1.88 47.13 16 10 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 13 C 0.49 20.03 7.71 87.66 0.68 20.70 16 14 O -0.59 -30.53 15.78 -3.01 -0.05 -30.57 16 15 C 0.06 1.52 4.72 85.56 0.40 1.93 16 16 N -0.69 -19.00 6.12 -517.94 -3.17 -22.17 16 17 C 0.06 1.04 5.30 86.30 0.46 1.50 16 18 C 0.14 3.00 2.88 44.99 0.13 3.13 16 19 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 20 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16 21 N -0.70 -17.33 4.35 -445.52 -1.94 -19.27 16 22 C 0.60 18.09 7.79 86.75 0.68 18.76 16 23 O -0.57 -20.21 16.59 -3.92 -0.07 -20.28 16 24 C -0.05 -1.23 7.13 42.46 0.30 -0.93 16 25 C -0.21 -4.59 10.81 22.41 0.24 -4.35 16 26 C 0.01 0.17 12.02 83.54 1.00 1.18 16 27 N -0.37 -5.89 6.83 -57.51 -0.39 -6.28 16 28 H 0.46 3.88 8.96 -219.99 -1.97 1.91 16 29 N -0.28 -6.72 11.92 -48.18 -0.57 -7.30 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.22 7.22 -2.39 -0.02 1.21 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 35 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 36 H 0.01 0.69 6.85 -2.39 -0.02 0.67 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.08 1.74 7.40 -2.39 -0.02 1.72 16 39 H 0.13 2.59 7.18 -2.38 -0.02 2.57 16 40 H 0.34 10.82 7.28 -89.69 -0.65 10.17 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.41 9.29 7.88 -92.71 -0.73 8.56 16 47 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.23 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -91.40 401.34 -1.54 -92.94 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -2.41 Total: 29.51 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.90 Total: 22.13 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -7.80 Total: -140.85 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.11 Total: -50.85 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -91.40 -1.54 -92.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367655545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.953 kcal (2) G-P(sol) polarization free energy of solvation -91.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds