Wall clock time and date at job start Tue Mar 31 2020 20:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47394 * 2 1 4 4 C 1.46497 * 119.99691 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.47011 * 269.99549 * 4 3 2 6 6 H 1.07999 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00098 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99596 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46981 * 119.99712 * 9 7 5 12 12 H 1.48499 * 109.47296 * 239.99720 * 9 7 5 13 13 C 1.34776 * 119.99997 * 89.99660 * 3 2 1 14 14 O 1.21279 * 119.99656 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00108 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47135 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99750 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47888 * 35.00212 * 17 16 15 19 19 C 1.53002 * 109.47273 * 275.00010 * 17 16 15 20 20 C 1.53005 * 109.47055 * 155.00372 * 17 16 15 21 21 N 1.46505 * 109.46534 * 305.00049 * 20 17 16 22 22 C 1.34777 * 119.99718 * 180.02562 * 21 20 17 23 23 O 1.21579 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.47706 * 120.00293 * 179.97438 * 22 21 20 25 25 C 1.41500 * 126.52096 * 179.97438 * 24 22 21 26 26 C 1.35365 * 105.50387 * 180.02562 * 25 24 22 27 27 N 1.35033 * 107.23063 * 359.97438 * 26 25 24 28 28 H 0.97001 * 124.89001 * 180.02562 * 27 26 25 29 29 N 1.28474 * 110.22757 * 0.02562 * 27 26 25 30 30 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47027 * 300.00103 * 1 2 3 32 32 H 1.08999 * 109.47011 * 59.99731 * 1 2 3 33 33 H 1.08993 * 109.47203 * 239.99859 * 2 1 3 34 34 H 1.09004 * 109.46915 * 119.99806 * 2 1 3 35 35 H 1.08996 * 109.47518 * 29.99886 * 4 3 2 36 36 H 1.09002 * 109.46939 * 149.99861 * 4 3 2 37 37 H 0.97002 * 119.99497 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47094 * 59.99737 * 15 13 3 39 39 H 1.09003 * 109.47198 * 299.99868 * 15 13 3 40 40 H 1.00893 * 111.00106 * 303.95736 * 16 15 13 41 41 H 1.08997 * 109.47000 * 300.00111 * 19 17 16 42 42 H 1.08998 * 109.47065 * 60.00478 * 19 17 16 43 43 H 1.09003 * 109.47185 * 180.02562 * 19 17 16 44 44 H 1.09000 * 109.47384 * 185.00133 * 20 17 16 45 45 H 1.08998 * 109.47196 * 64.99290 * 20 17 16 46 46 H 0.96995 * 120.00601 * 359.97438 * 21 20 17 47 47 H 1.08000 * 127.24928 * 0.02691 * 25 24 22 48 48 H 1.08004 * 126.38789 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9135 2.0962 -3.4170 10 1 6.6005 1.2393 -2.4176 11 1 5.9205 1.4180 -4.7381 12 1 6.6217 3.3970 -3.5247 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.3110 2.2060 3.5888 17 6 2.0774 1.5457 4.8801 18 1 2.3283 0.4882 4.7983 19 6 0.6048 1.6918 5.2687 20 6 2.9545 2.1965 5.9517 21 7 4.3550 2.1626 5.5230 22 6 5.3145 2.6826 6.3138 23 8 5.0178 3.1803 7.3827 24 6 6.7267 2.6480 5.8820 25 6 7.8388 3.1507 6.5981 26 6 8.9156 2.8985 5.8176 27 7 8.4666 2.2813 4.7037 28 1 9.0269 1.9849 3.9694 29 7 7.1904 2.1430 4.7563 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6755 3.5168 -4.4436 38 1 2.6228 0.4187 2.5299 39 1 0.9444 1.0116 2.5302 40 1 3.2592 2.5441 3.5215 41 1 0.3539 2.7494 5.3507 42 1 -0.0201 1.2282 4.5054 43 1 0.4316 1.2023 6.2271 44 1 2.8481 1.6506 6.8891 45 1 2.6439 3.2312 6.0964 46 1 4.5919 1.7652 4.6705 47 1 7.8302 3.6339 7.5639 48 1 9.9427 3.1443 6.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371110735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:27 Heat of formation + Delta-G solvation = 8.801913 kcal Electronic energy + Delta-G solvation = -29289.171174 eV Core-core repulsion = 25188.080392 eV Total energy + Delta-G solvation = -4101.090782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.85411 -39.72869 -39.07112 -37.20443 -35.24419 -34.05774 -32.81976 -32.16240 -31.24274 -30.79073 -30.06897 -27.69960 -26.89044 -25.45442 -23.67183 -23.01524 -22.27871 -21.92682 -20.75197 -20.24542 -18.86622 -18.42152 -17.36084 -16.60574 -16.40957 -16.25080 -15.94343 -15.75384 -15.65924 -15.14756 -14.51797 -14.36488 -14.24967 -13.93843 -13.62145 -13.47575 -13.33047 -13.23780 -12.85889 -12.66762 -12.49248 -12.19745 -12.05699 -11.82767 -11.76320 -11.48206 -11.23493 -11.20169 -11.00885 -10.90215 -10.73759 -10.54756 -10.32487 -10.14120 -9.72391 -9.62032 -9.47117 -9.22105 -8.89850 -8.44634 -8.37603 -7.63802 -6.05014 -4.09504 1.37245 1.88978 2.58259 3.02556 3.26941 3.27763 3.33825 3.36906 3.46813 3.71020 4.21454 4.29642 4.44146 4.54086 4.58515 4.92140 4.97843 5.08570 5.18298 5.27331 5.29822 5.35918 5.42700 5.44818 5.48433 5.51052 5.64693 5.65616 5.69222 5.80728 5.84445 6.02829 6.07757 6.12074 6.23090 6.26349 6.48354 6.68619 6.85455 7.12938 7.23034 7.35587 7.47281 7.57186 7.60840 7.92051 8.03837 8.23820 8.45325 8.90770 9.13662 9.55467 11.03091 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.003426 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.819973 B = 8170.298028 C =10997.317638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.040 3.960 16 N -0.668 5.668 17 C 0.072 3.928 18 H 0.051 0.949 19 C -0.138 4.138 20 C 0.117 3.883 21 N -0.720 5.720 22 C 0.608 3.392 23 O -0.533 6.533 24 C -0.018 4.018 25 C -0.180 4.180 26 C -0.016 4.016 27 N -0.379 5.379 28 H 0.448 0.552 29 N -0.253 5.253 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.351 0.649 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.405 0.595 47 H 0.163 0.837 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -7.865 18.944 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.092 4.092 16 N -0.304 5.304 17 C -0.038 4.038 18 H 0.069 0.931 19 C -0.196 4.196 20 C -0.006 4.006 21 N -0.373 5.373 22 C 0.393 3.607 23 O -0.407 6.407 24 C -0.179 4.179 25 C -0.208 4.208 26 C -0.160 4.160 27 N -0.094 5.094 28 H 0.293 0.707 29 N -0.090 5.090 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.241 0.759 47 H 0.181 0.819 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.808 -6.985 18.587 20.053 hybrid contribution 2.477 -0.779 -0.629 2.672 sum 5.285 -7.764 17.958 20.265 Atomic orbital electron populations 1.22225 0.96797 1.01333 1.02414 1.21401 0.93529 0.84328 1.02503 1.48246 1.64076 1.13169 1.07695 1.19248 0.96148 0.93693 0.78132 1.21469 0.96967 1.31697 1.06188 0.92537 1.24937 0.97760 0.94989 0.96454 1.69946 1.35529 1.33500 1.14319 0.86461 0.84784 0.77976 0.78270 1.19937 1.20982 1.20919 1.20162 0.78963 0.87099 0.84862 1.90685 1.45053 1.17678 1.86900 1.21987 1.02490 0.94201 0.90558 1.60169 1.32782 1.37709 0.99743 1.21813 0.96574 0.96354 0.89034 0.93150 1.21738 0.93934 1.03188 1.00744 1.21661 0.78959 1.02769 0.97215 1.45888 1.07184 1.61039 1.23145 1.16819 0.82614 0.77657 0.83616 1.90795 1.82160 1.45402 1.22373 1.21952 0.95433 1.06600 0.93877 1.21797 0.90023 1.06394 1.02563 1.22981 1.01178 1.02841 0.89005 1.43408 1.05042 1.43127 1.17798 0.70682 1.73596 0.94149 1.20302 1.20987 0.92248 0.93018 0.92004 0.90019 0.91971 0.95081 0.93893 0.92796 0.92950 0.88577 0.82705 0.91357 0.92097 0.92271 0.90428 0.89950 0.75876 0.81910 0.79694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 5 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.50 10.34 7.71 -10.99 -0.08 10.26 16 14 O -0.53 -13.34 15.78 5.56 0.09 -13.25 16 15 C 0.04 0.58 4.52 -4.98 -0.02 0.56 16 16 N -0.67 -9.42 5.92 -107.99 -0.64 -10.06 16 17 C 0.07 0.76 2.81 -67.71 -0.19 0.57 16 18 H 0.05 0.48 7.80 -51.93 -0.41 0.07 16 19 C -0.14 -1.27 9.41 37.16 0.35 -0.92 16 20 C 0.12 1.28 5.31 -4.04 -0.02 1.26 16 21 N -0.72 -8.74 4.99 -61.29 -0.31 -9.05 16 22 C 0.61 8.45 7.82 -12.39 -0.10 8.36 16 23 O -0.53 -8.61 16.93 5.30 0.09 -8.52 16 24 C -0.02 -0.22 7.13 -82.77 -0.59 -0.81 16 25 C -0.18 -1.84 10.81 -39.36 -0.43 -2.27 16 26 C -0.02 -0.12 12.02 -17.17 -0.21 -0.32 16 27 N -0.38 -3.20 6.83 30.47 0.21 -2.99 16 28 H 0.45 2.29 8.96 -190.44 -1.71 0.58 16 29 N -0.25 -3.05 11.92 33.42 0.40 -2.65 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.05 0.67 7.32 -51.93 -0.38 0.29 16 39 H 0.10 1.22 6.48 -51.93 -0.34 0.88 16 40 H 0.35 5.45 6.42 -39.30 -0.25 5.19 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.41 4.83 7.10 -40.82 -0.29 4.54 16 47 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.19 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -37.18 402.53 -8.81 -45.99 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.62 Total: 7.07 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -1.38 Total: 9.42 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.03 Total: -63.44 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.18 -8.81 -45.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371110735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.791 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds