Wall clock time and date at job start Tue Mar 31 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47394 * 2 1 4 4 C 1.46497 * 119.99691 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.47011 * 269.99549 * 4 3 2 6 6 H 1.07999 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00098 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99596 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46981 * 119.99712 * 9 7 5 12 12 H 1.48499 * 109.47296 * 239.99720 * 9 7 5 13 13 C 1.34776 * 119.99997 * 89.99660 * 3 2 1 14 14 O 1.21279 * 119.99656 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00108 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47135 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99750 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47888 * 35.00212 * 17 16 15 19 19 C 1.53002 * 109.47273 * 275.00010 * 17 16 15 20 20 C 1.53005 * 109.47055 * 155.00372 * 17 16 15 21 21 N 1.46505 * 109.46534 * 305.00049 * 20 17 16 22 22 C 1.34777 * 119.99718 * 180.02562 * 21 20 17 23 23 O 1.21579 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.47706 * 120.00293 * 179.97438 * 22 21 20 25 25 C 1.41500 * 126.52096 * 179.97438 * 24 22 21 26 26 C 1.35365 * 105.50387 * 180.02562 * 25 24 22 27 27 N 1.35033 * 107.23063 * 359.97438 * 26 25 24 28 28 H 0.97001 * 124.89001 * 180.02562 * 27 26 25 29 29 N 1.28474 * 110.22757 * 0.02562 * 27 26 25 30 30 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47027 * 300.00103 * 1 2 3 32 32 H 1.08999 * 109.47011 * 59.99731 * 1 2 3 33 33 H 1.08993 * 109.47203 * 239.99859 * 2 1 3 34 34 H 1.09004 * 109.46915 * 119.99806 * 2 1 3 35 35 H 1.08996 * 109.47518 * 29.99886 * 4 3 2 36 36 H 1.09002 * 109.46939 * 149.99861 * 4 3 2 37 37 H 0.97002 * 119.99497 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47094 * 59.99737 * 15 13 3 39 39 H 1.09003 * 109.47198 * 299.99868 * 15 13 3 40 40 H 1.00893 * 111.00106 * 303.95736 * 16 15 13 41 41 H 1.08997 * 109.47000 * 300.00111 * 19 17 16 42 42 H 1.08998 * 109.47065 * 60.00478 * 19 17 16 43 43 H 1.09003 * 109.47185 * 180.02562 * 19 17 16 44 44 H 1.09000 * 109.47384 * 185.00133 * 20 17 16 45 45 H 1.08998 * 109.47196 * 64.99290 * 20 17 16 46 46 H 0.96995 * 120.00601 * 359.97438 * 21 20 17 47 47 H 1.08000 * 127.24928 * 0.02691 * 25 24 22 48 48 H 1.08004 * 126.38789 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9135 2.0962 -3.4170 10 1 6.6005 1.2393 -2.4176 11 1 5.9205 1.4180 -4.7381 12 1 6.6217 3.3970 -3.5247 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.3110 2.2060 3.5888 17 6 2.0774 1.5457 4.8801 18 1 2.3283 0.4882 4.7983 19 6 0.6048 1.6918 5.2687 20 6 2.9545 2.1965 5.9517 21 7 4.3550 2.1626 5.5230 22 6 5.3145 2.6826 6.3138 23 8 5.0178 3.1803 7.3827 24 6 6.7267 2.6480 5.8820 25 6 7.8388 3.1507 6.5981 26 6 8.9156 2.8985 5.8176 27 7 8.4666 2.2813 4.7037 28 1 9.0269 1.9849 3.9694 29 7 7.1904 2.1430 4.7563 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6755 3.5168 -4.4436 38 1 2.6228 0.4187 2.5299 39 1 0.9444 1.0116 2.5302 40 1 3.2592 2.5441 3.5215 41 1 0.3539 2.7494 5.3507 42 1 -0.0201 1.2282 4.5054 43 1 0.4316 1.2023 6.2271 44 1 2.8481 1.6506 6.8891 45 1 2.6439 3.2312 6.0964 46 1 4.5919 1.7652 4.6705 47 1 7.8302 3.6339 7.5639 48 1 9.9427 3.1443 6.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371110735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:26 Heat of formation + Delta-G solvation = -21.164187 kcal Electronic energy + Delta-G solvation = -29290.470602 eV Core-core repulsion = 25188.080392 eV Total energy + Delta-G solvation = -4102.390209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.60046 -40.90068 -40.47855 -38.28007 -36.88929 -35.18287 -34.83133 -33.01540 -32.19853 -31.63884 -31.47860 -29.39944 -27.81733 -26.93712 -24.75836 -24.46868 -23.80520 -22.63482 -21.67244 -21.17271 -19.98770 -19.49840 -18.62994 -18.35494 -17.81932 -17.38071 -17.02160 -17.00157 -16.81267 -16.44358 -16.17551 -15.50025 -15.35183 -14.97731 -14.71402 -14.64414 -14.61158 -14.29479 -14.06876 -13.77765 -13.60955 -13.49149 -13.38081 -13.22579 -13.00442 -12.87687 -12.69438 -12.56114 -12.46882 -12.15385 -12.01895 -11.89375 -11.84570 -11.68152 -11.37792 -10.65397 -10.57216 -10.54800 -10.20178 -10.14571 -9.44870 -9.38932 -8.22175 -6.37178 0.47307 1.21470 1.34854 1.37204 1.48907 1.85506 1.88409 2.20857 2.27703 2.31331 2.41884 3.07052 3.14553 3.40833 3.65880 3.73816 4.01722 4.10609 4.16808 4.21439 4.31747 4.33739 4.41479 4.49666 4.60574 4.67936 4.72359 4.75015 4.83297 4.89539 4.99836 5.01142 5.05537 5.06990 5.22633 5.23484 5.33953 5.41317 5.47125 5.58871 5.85115 5.96060 6.07361 6.09871 6.22670 6.30539 6.71505 6.81816 6.84930 7.04988 7.29167 7.54158 8.85071 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.003426 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.819973 B = 8170.298028 C =10997.317638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.057 3.943 16 N -0.687 5.687 17 C 0.080 3.920 18 H 0.074 0.926 19 C -0.136 4.136 20 C 0.119 3.881 21 N -0.714 5.714 22 C 0.602 3.398 23 O -0.566 6.566 24 C -0.046 4.046 25 C -0.207 4.207 26 C 0.013 3.987 27 N -0.370 5.370 28 H 0.462 0.538 29 N -0.281 5.281 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.020 0.980 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.340 0.660 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.407 0.593 47 H 0.168 0.832 48 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -10.492 20.026 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.322 5.322 17 C -0.029 4.029 18 H 0.091 0.909 19 C -0.194 4.194 20 C -0.005 4.005 21 N -0.365 5.365 22 C 0.388 3.612 23 O -0.443 6.443 24 C -0.206 4.206 25 C -0.235 4.235 26 C -0.131 4.131 27 N -0.086 5.086 28 H 0.310 0.690 29 N -0.119 5.119 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.243 0.757 47 H 0.185 0.815 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.065 -9.689 19.661 22.293 hybrid contribution 2.081 0.054 -0.975 2.298 sum 6.146 -9.634 18.686 21.904 Atomic orbital electron populations 1.22159 0.94648 1.03484 1.01655 1.21754 0.95274 0.81309 1.03932 1.48275 1.64109 1.15095 1.06121 1.18661 0.95285 0.91366 0.80546 1.21739 0.97826 1.31780 1.06452 0.92744 1.25893 1.02458 0.94507 0.96492 1.70074 1.37747 1.34336 1.14817 0.85351 0.78975 0.77939 0.78428 1.18840 1.19471 1.20923 1.21292 0.77377 0.86656 0.86550 1.90650 1.47677 1.20549 1.87907 1.21909 1.04612 0.93976 0.86946 1.60194 1.32195 1.38729 1.01116 1.21885 0.97223 0.97006 0.86828 0.90860 1.21751 0.92798 1.02624 1.02210 1.21719 0.78449 1.02149 0.98151 1.45900 1.07468 1.60318 1.22855 1.17122 0.83533 0.77210 0.83340 1.90757 1.82837 1.47026 1.23711 1.21981 0.95387 1.08268 0.94970 1.22074 0.90319 1.07580 1.03487 1.23635 1.02424 0.99896 0.87171 1.43548 1.04247 1.42269 1.18552 0.68966 1.73516 0.95904 1.21421 1.21089 0.88547 0.92033 0.94551 0.91079 0.88014 0.96219 0.98957 0.92490 0.90035 0.85816 0.83991 0.92867 0.91538 0.89860 0.88975 0.91665 0.75700 0.81479 0.74949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.11 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -25.33 2.46 -826.16 -2.03 -27.36 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 9 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C 0.49 20.38 7.71 87.66 0.68 21.05 16 14 O -0.59 -31.10 15.78 -3.03 -0.05 -31.15 16 15 C 0.06 1.53 4.52 85.56 0.39 1.92 16 16 N -0.69 -18.71 5.92 -495.56 -2.94 -21.65 16 17 C 0.08 1.50 2.81 44.92 0.13 1.63 16 18 H 0.07 1.10 7.80 -2.39 -0.02 1.08 16 19 C -0.14 -2.16 9.41 71.98 0.68 -1.49 16 20 C 0.12 2.52 5.31 86.38 0.46 2.98 16 21 N -0.71 -17.41 4.99 -466.08 -2.32 -19.74 16 22 C 0.60 17.20 7.82 86.75 0.68 17.88 16 23 O -0.57 -18.93 16.93 -3.97 -0.07 -19.00 16 24 C -0.05 -1.19 7.13 42.46 0.30 -0.89 16 25 C -0.21 -4.09 10.81 22.41 0.24 -3.85 16 26 C 0.01 0.16 12.02 83.54 1.00 1.17 16 27 N -0.37 -5.57 6.83 -57.51 -0.39 -5.97 16 28 H 0.46 3.71 8.96 -219.99 -1.97 1.74 16 29 N -0.28 -6.63 11.92 -48.18 -0.57 -7.21 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.10 2.18 6.44 -2.38 -0.02 2.17 16 35 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 36 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.08 1.75 7.32 -2.38 -0.02 1.74 16 39 H 0.12 2.67 6.48 -2.39 -0.02 2.65 16 40 H 0.34 10.61 6.42 -89.70 -0.58 10.04 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.41 9.68 7.10 -92.71 -0.66 9.02 16 47 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 48 H 0.23 0.39 8.06 -2.91 -0.02 0.36 16 Total: -1.00 -87.30 402.53 -1.31 -88.62 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -2.20 Total: 27.88 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.95 Total: 25.37 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -7.97 Total: -138.45 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.11 Total: -50.15 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -87.30 -1.31 -88.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371110735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.451 kcal (2) G-P(sol) polarization free energy of solvation -87.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds