Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47356 * 2 1 4 4 C 1.46499 * 119.99853 * 269.99739 * 3 2 1 5 5 C 1.50696 * 109.47163 * 270.00404 * 4 3 2 6 6 H 1.08001 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99755 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46782 * 119.99706 * 9 7 5 12 12 H 1.48492 * 109.47231 * 239.99558 * 9 7 5 13 13 C 1.34773 * 120.00280 * 89.99636 * 3 2 1 14 14 O 1.21276 * 120.00277 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99814 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47112 * 180.02562 * 15 13 3 17 17 C 1.46892 * 111.00027 * 180.02562 * 16 15 13 18 18 H 1.09007 * 109.47030 * 324.99461 * 17 16 15 19 19 C 1.52999 * 109.47492 * 84.99419 * 17 16 15 20 20 C 1.52999 * 109.47180 * 204.99968 * 17 16 15 21 21 N 1.46505 * 109.47192 * 54.99470 * 20 17 16 22 22 C 1.34777 * 119.99724 * 180.02562 * 21 20 17 23 23 O 1.21573 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.47710 * 119.99649 * 179.72300 * 22 21 20 25 25 C 1.41506 * 126.51875 * 179.97438 * 24 22 21 26 26 C 1.35360 * 105.50172 * 179.90345 * 25 24 22 27 27 N 1.35028 * 107.23078 * 0.36159 * 26 25 24 28 28 H 0.97003 * 124.88656 * 179.72101 * 27 26 25 29 29 N 1.28462 * 110.23361 * 359.76305 * 27 26 25 30 30 H 1.08995 * 109.46751 * 300.00460 * 1 2 3 31 31 H 1.09001 * 109.46426 * 60.00350 * 1 2 3 32 32 H 1.08995 * 109.47116 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47330 * 239.99048 * 2 1 3 34 34 H 1.09006 * 109.46691 * 120.00071 * 2 1 3 35 35 H 1.09004 * 109.46834 * 29.99732 * 4 3 2 36 36 H 1.08999 * 109.46979 * 150.00004 * 4 3 2 37 37 H 0.97003 * 120.00099 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47547 * 59.99553 * 15 13 3 39 39 H 1.09002 * 109.47128 * 299.99631 * 15 13 3 40 40 H 1.00897 * 110.99957 * 56.03912 * 16 15 13 41 41 H 1.08999 * 109.47296 * 179.97438 * 19 17 16 42 42 H 1.09001 * 109.47082 * 299.99875 * 19 17 16 43 43 H 1.08998 * 109.47063 * 60.00252 * 19 17 16 44 44 H 1.09003 * 109.46803 * 295.00140 * 20 17 16 45 45 H 1.08993 * 109.47533 * 174.99859 * 20 17 16 46 46 H 0.97000 * 119.99792 * 0.02562 * 21 20 17 47 47 H 1.08001 * 127.24486 * 0.02562 * 25 24 22 48 48 H 1.07999 * 126.38265 * 180.11947 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2306 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 3.3497 3.1263 -3.6176 9 14 5.9140 2.0971 -3.4164 10 1 6.6016 1.2418 -2.4158 11 1 5.9218 1.4184 -4.7372 12 1 6.6213 3.3982 -3.5242 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2063 3.5889 17 6 2.0774 1.5458 4.8802 18 1 1.2178 0.8804 4.7984 19 6 3.3152 0.7346 5.2683 20 6 1.8038 2.6029 5.9519 21 7 0.6925 3.4562 5.5237 22 6 0.2733 4.4640 6.3143 23 8 0.8171 4.6648 7.3830 24 6 -0.8431 5.3281 5.8798 25 6 -1.3921 6.4183 6.5958 26 6 -2.3830 6.9037 5.8118 27 7 -2.4238 6.1393 4.6994 28 1 -3.0455 6.2614 3.9649 29 7 -1.5214 5.2267 4.7542 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5819 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1384 37 1 3.6757 3.5168 -4.4435 38 1 2.6227 0.4187 2.5300 39 1 0.9444 1.0116 2.5302 40 1 1.7842 3.0650 3.5217 41 1 3.1428 0.2448 6.2267 42 1 3.5100 -0.0186 4.5048 43 1 4.1747 1.3999 5.3501 44 1 2.6954 3.2130 6.0963 45 1 1.5441 2.1113 6.8893 46 1 0.2584 3.2958 4.6712 47 1 -1.0838 6.7867 7.5631 48 1 -3.0243 7.7432 6.0361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371110739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = 9.306482 kcal Electronic energy + Delta-G solvation = -29169.010355 eV Core-core repulsion = 25067.941453 eV Total energy + Delta-G solvation = -4101.068902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.91311 -39.75566 -39.08072 -37.21668 -35.24873 -34.08297 -32.80257 -32.21246 -31.27067 -30.82524 -30.07680 -27.70091 -26.89927 -25.45226 -23.70846 -23.01903 -22.28223 -21.98022 -20.76378 -20.28136 -18.91781 -18.40545 -17.43618 -16.67058 -16.33450 -16.25378 -15.98106 -15.85344 -15.65640 -14.95428 -14.58294 -14.43964 -14.17423 -13.98779 -13.90049 -13.47908 -13.38144 -12.99818 -12.80068 -12.73331 -12.61206 -12.11690 -12.00413 -11.91591 -11.68605 -11.55043 -11.28305 -11.18224 -11.04713 -10.87751 -10.71369 -10.52175 -10.35724 -10.10664 -9.77593 -9.59215 -9.52588 -9.25119 -8.87940 -8.41997 -8.38658 -7.63578 -6.02649 -4.06784 1.31658 1.83887 2.52288 2.98545 3.23600 3.31351 3.38731 3.41507 3.47633 3.71840 4.16555 4.28719 4.47944 4.52303 4.54541 4.88876 4.95725 5.07535 5.17638 5.27297 5.31236 5.32304 5.38374 5.42121 5.45580 5.57231 5.63281 5.65967 5.70650 5.76768 5.85565 6.00607 6.02841 6.12139 6.21610 6.26149 6.45154 6.62432 6.85459 7.12771 7.19226 7.35755 7.46222 7.55192 7.58017 7.94476 8.00292 8.25993 8.45200 8.93449 9.14140 9.58458 11.05466 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.002596 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.447146 B =10781.800458 C =11604.706625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.668 5.668 17 C 0.073 3.927 18 H 0.050 0.950 19 C -0.139 4.139 20 C 0.117 3.883 21 N -0.719 5.719 22 C 0.608 3.392 23 O -0.532 6.532 24 C -0.016 4.016 25 C -0.179 4.179 26 C -0.016 4.016 27 N -0.380 5.380 28 H 0.448 0.552 29 N -0.255 5.255 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.350 0.650 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.405 0.595 47 H 0.164 0.836 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -1.473 18.982 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.092 4.092 16 N -0.303 5.303 17 C -0.037 4.037 18 H 0.068 0.932 19 C -0.197 4.197 20 C -0.006 4.006 21 N -0.372 5.372 22 C 0.392 3.608 23 O -0.406 6.406 24 C -0.177 4.177 25 C -0.207 4.207 26 C -0.160 4.160 27 N -0.094 5.094 28 H 0.293 0.707 29 N -0.092 5.092 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.240 0.760 47 H 0.181 0.819 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.024 -1.392 18.631 22.774 hybrid contribution -0.591 0.315 -0.618 0.911 sum -13.615 -1.077 18.013 22.605 Atomic orbital electron populations 1.22223 0.96937 1.01338 1.02199 1.21398 0.93361 0.84380 1.02642 1.48248 1.64042 1.13193 1.07702 1.19245 0.96245 0.93577 0.78102 1.21483 0.96931 1.31681 1.06120 0.92412 1.24936 0.97841 0.94946 0.96441 1.69939 1.35601 1.33622 1.14356 0.86448 0.84704 0.78072 0.78234 1.19773 1.21032 1.20892 1.20170 0.78933 0.87139 0.84860 1.90684 1.44735 1.17983 1.86892 1.21983 0.99805 0.96855 0.90532 1.60137 1.63425 1.07005 0.99754 1.21807 0.98159 0.94734 0.88985 0.93188 1.21744 0.97408 0.99779 1.00757 1.21670 0.89666 0.92053 0.97243 1.45882 1.36044 1.32191 1.23098 1.16823 0.81071 0.79247 0.83661 1.90800 1.56635 1.70784 1.22381 1.21963 1.00912 1.01028 0.93820 1.21810 0.98448 0.97967 1.02504 1.22978 1.03261 1.00771 0.88965 1.43386 1.26384 1.21775 1.17882 0.70739 1.73569 1.02282 1.12293 1.21093 0.93269 0.92036 0.92215 0.89942 0.91864 0.95130 0.93997 0.92838 0.88532 0.93013 0.82871 0.92277 0.92027 0.91309 0.89908 0.90405 0.75968 0.81890 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 5 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 C 0.50 10.34 7.71 -10.98 -0.08 10.25 16 14 O -0.53 -13.34 15.78 5.56 0.09 -13.25 16 15 C 0.04 0.59 4.52 -4.97 -0.02 0.57 16 16 N -0.67 -9.41 5.92 -107.99 -0.64 -10.05 16 17 C 0.07 0.77 2.81 -67.72 -0.19 0.58 16 18 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 19 C -0.14 -1.33 9.42 37.16 0.35 -0.98 16 20 C 0.12 1.26 5.31 -4.04 -0.02 1.24 16 21 N -0.72 -8.34 4.99 -61.29 -0.31 -8.65 16 22 C 0.61 8.10 7.82 -12.39 -0.10 8.00 16 23 O -0.53 -8.39 16.93 5.30 0.09 -8.30 16 24 C -0.02 -0.19 7.13 -82.76 -0.59 -0.78 16 25 C -0.18 -1.71 10.81 -39.36 -0.43 -2.14 16 26 C -0.02 -0.10 12.02 -17.17 -0.21 -0.31 16 27 N -0.38 -2.76 6.83 30.47 0.21 -2.55 16 28 H 0.45 1.66 8.96 -190.44 -1.71 -0.05 16 29 N -0.26 -2.78 11.92 33.42 0.40 -2.38 16 30 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.28 6.70 -51.93 -0.35 0.94 16 39 H 0.05 0.63 7.10 -51.93 -0.37 0.26 16 40 H 0.35 5.25 6.42 -39.29 -0.25 5.00 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.40 4.49 7.10 -40.82 -0.29 4.20 16 47 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.19 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -37.64 402.54 -8.81 -46.44 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.62 Total: 5.38 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.38 Total: 9.08 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.03 Total: -62.52 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.18 Total: -21.55 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.64 -8.81 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371110739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.748 kcal (2) G-P(sol) polarization free energy of solvation -37.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds