Wall clock time and date at job start Tue Mar 31 2020 20:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47356 * 2 1 4 4 C 1.46499 * 119.99853 * 269.99739 * 3 2 1 5 5 C 1.50696 * 109.47163 * 270.00404 * 4 3 2 6 6 H 1.08001 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99755 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46782 * 119.99706 * 9 7 5 12 12 H 1.48492 * 109.47231 * 239.99558 * 9 7 5 13 13 C 1.34773 * 120.00280 * 89.99636 * 3 2 1 14 14 O 1.21276 * 120.00277 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99814 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47112 * 180.02562 * 15 13 3 17 17 C 1.46892 * 111.00027 * 180.02562 * 16 15 13 18 18 H 1.09007 * 109.47030 * 324.99461 * 17 16 15 19 19 C 1.52999 * 109.47492 * 84.99419 * 17 16 15 20 20 C 1.52999 * 109.47180 * 204.99968 * 17 16 15 21 21 N 1.46505 * 109.47192 * 54.99470 * 20 17 16 22 22 C 1.34777 * 119.99724 * 180.02562 * 21 20 17 23 23 O 1.21573 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.47710 * 119.99649 * 179.72300 * 22 21 20 25 25 C 1.41506 * 126.51875 * 179.97438 * 24 22 21 26 26 C 1.35360 * 105.50172 * 179.90345 * 25 24 22 27 27 N 1.35028 * 107.23078 * 0.36159 * 26 25 24 28 28 H 0.97003 * 124.88656 * 179.72101 * 27 26 25 29 29 N 1.28462 * 110.23361 * 359.76305 * 27 26 25 30 30 H 1.08995 * 109.46751 * 300.00460 * 1 2 3 31 31 H 1.09001 * 109.46426 * 60.00350 * 1 2 3 32 32 H 1.08995 * 109.47116 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47330 * 239.99048 * 2 1 3 34 34 H 1.09006 * 109.46691 * 120.00071 * 2 1 3 35 35 H 1.09004 * 109.46834 * 29.99732 * 4 3 2 36 36 H 1.08999 * 109.46979 * 150.00004 * 4 3 2 37 37 H 0.97003 * 120.00099 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47547 * 59.99553 * 15 13 3 39 39 H 1.09002 * 109.47128 * 299.99631 * 15 13 3 40 40 H 1.00897 * 110.99957 * 56.03912 * 16 15 13 41 41 H 1.08999 * 109.47296 * 179.97438 * 19 17 16 42 42 H 1.09001 * 109.47082 * 299.99875 * 19 17 16 43 43 H 1.08998 * 109.47063 * 60.00252 * 19 17 16 44 44 H 1.09003 * 109.46803 * 295.00140 * 20 17 16 45 45 H 1.08993 * 109.47533 * 174.99859 * 20 17 16 46 46 H 0.97000 * 119.99792 * 0.02562 * 21 20 17 47 47 H 1.08001 * 127.24486 * 0.02562 * 25 24 22 48 48 H 1.07999 * 126.38265 * 180.11947 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2306 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 3.3497 3.1263 -3.6176 9 14 5.9140 2.0971 -3.4164 10 1 6.6016 1.2418 -2.4158 11 1 5.9218 1.4184 -4.7372 12 1 6.6213 3.3982 -3.5242 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2063 3.5889 17 6 2.0774 1.5458 4.8802 18 1 1.2178 0.8804 4.7984 19 6 3.3152 0.7346 5.2683 20 6 1.8038 2.6029 5.9519 21 7 0.6925 3.4562 5.5237 22 6 0.2733 4.4640 6.3143 23 8 0.8171 4.6648 7.3830 24 6 -0.8431 5.3281 5.8798 25 6 -1.3921 6.4183 6.5958 26 6 -2.3830 6.9037 5.8118 27 7 -2.4238 6.1393 4.6994 28 1 -3.0455 6.2614 3.9649 29 7 -1.5214 5.2267 4.7542 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5819 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1384 37 1 3.6757 3.5168 -4.4435 38 1 2.6227 0.4187 2.5300 39 1 0.9444 1.0116 2.5302 40 1 1.7842 3.0650 3.5217 41 1 3.1428 0.2448 6.2267 42 1 3.5100 -0.0186 4.5048 43 1 4.1747 1.3999 5.3501 44 1 2.6954 3.2130 6.0963 45 1 1.5441 2.1113 6.8893 46 1 0.2584 3.2958 4.6712 47 1 -1.0838 6.7867 7.5631 48 1 -3.0243 7.7432 6.0361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371110739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:31 Heat of formation + Delta-G solvation = -21.075334 kcal Electronic energy + Delta-G solvation = -29170.327809 eV Core-core repulsion = 25067.941453 eV Total energy + Delta-G solvation = -4102.386357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59369 -40.90117 -40.47643 -38.28293 -36.89008 -35.18331 -34.83212 -33.01132 -32.20195 -31.63704 -31.47170 -29.40604 -27.81994 -26.93744 -24.74616 -24.47240 -23.81339 -22.62803 -21.67747 -21.17053 -19.96348 -19.49378 -18.66807 -18.35748 -17.81980 -17.40116 -17.08241 -16.93983 -16.72486 -16.47051 -15.95755 -15.75587 -15.33042 -15.08147 -14.71706 -14.63589 -14.48372 -14.28707 -14.04317 -13.74845 -13.61875 -13.57897 -13.33941 -13.17850 -13.09102 -12.86488 -12.68996 -12.56512 -12.46307 -12.17157 -12.03107 -11.95716 -11.78014 -11.67670 -11.37436 -10.65009 -10.56238 -10.53381 -10.19315 -10.14023 -9.48136 -9.35271 -8.22474 -6.36780 0.47802 1.22120 1.35135 1.38219 1.49755 1.85494 1.88212 2.22177 2.28452 2.31983 2.41869 3.06869 3.14401 3.41069 3.65813 3.73889 4.02666 4.11926 4.15857 4.21862 4.28479 4.34484 4.46160 4.48359 4.60560 4.66358 4.73141 4.75709 4.83541 4.89219 4.98772 5.00384 5.05041 5.06769 5.22475 5.23266 5.34171 5.39894 5.46646 5.59113 5.85175 5.96976 6.07766 6.10800 6.24909 6.31992 6.71825 6.82748 6.85015 7.05756 7.29553 7.54314 8.84555 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.002596 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.447146 B =10781.800458 C =11604.706625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.058 3.942 16 N -0.689 5.689 17 C 0.081 3.919 18 H 0.076 0.924 19 C -0.137 4.137 20 C 0.119 3.881 21 N -0.713 5.713 22 C 0.602 3.398 23 O -0.567 6.567 24 C -0.047 4.047 25 C -0.207 4.207 26 C 0.014 3.986 27 N -0.368 5.368 28 H 0.463 0.537 29 N -0.279 5.279 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.341 0.659 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.408 0.592 47 H 0.166 0.834 48 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 -3.254 19.934 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.324 5.324 17 C -0.028 4.028 18 H 0.094 0.906 19 C -0.195 4.195 20 C -0.004 4.004 21 N -0.365 5.365 22 C 0.387 3.613 23 O -0.444 6.444 24 C -0.206 4.206 25 C -0.235 4.235 26 C -0.131 4.131 27 N -0.085 5.085 28 H 0.311 0.689 29 N -0.117 5.117 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.161 0.839 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.244 0.756 47 H 0.184 0.816 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.118 -3.252 19.569 24.348 hybrid contribution -0.346 0.920 -0.928 1.352 sum -14.464 -2.332 18.641 23.709 Atomic orbital electron populations 1.22150 0.94563 1.03485 1.01617 1.21753 0.95285 0.81342 1.03955 1.48273 1.64071 1.15123 1.06126 1.18656 0.95151 0.91414 0.80559 1.21747 0.97953 1.31759 1.06363 0.93004 1.25852 1.02325 0.94532 0.96514 1.70053 1.37656 1.34342 1.14834 0.85384 0.79133 0.77965 0.78420 1.19156 1.19286 1.20924 1.21302 0.77354 0.86681 0.86553 1.90649 1.47385 1.20834 1.87903 1.21894 1.02259 0.96303 0.86908 1.60146 1.64063 1.07116 1.01117 1.21863 0.99551 0.94567 0.86821 0.90637 1.21759 0.96228 0.99367 1.02183 1.21698 0.88741 0.91865 0.98126 1.45876 1.35857 1.31840 1.22883 1.17142 0.81293 0.79485 0.83345 1.90760 1.58008 1.71831 1.23809 1.21956 1.01476 1.02164 0.95020 1.22072 0.99856 0.98203 1.03409 1.23614 1.01886 1.00427 0.87179 1.43529 1.25527 1.20822 1.18584 0.68873 1.73490 1.03360 1.13858 1.20999 0.92083 0.94438 0.88604 0.91123 0.88047 0.96071 0.98800 0.92467 0.86374 0.89490 0.83851 0.89787 0.91761 0.93042 0.91815 0.88970 0.75619 0.81640 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.89 5.93 86.38 0.51 3.40 16 3 N -0.60 -25.29 2.46 -826.15 -2.03 -27.32 16 4 C 0.26 14.38 5.16 85.63 0.44 14.82 16 5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.49 20.34 7.71 87.66 0.68 21.02 16 14 O -0.59 -31.06 15.78 -3.02 -0.05 -31.11 16 15 C 0.06 1.55 4.52 85.56 0.39 1.94 16 16 N -0.69 -18.75 5.92 -495.57 -2.94 -21.68 16 17 C 0.08 1.53 2.81 44.92 0.13 1.65 16 18 H 0.08 1.10 7.80 -2.38 -0.02 1.08 16 19 C -0.14 -2.32 9.42 71.98 0.68 -1.64 16 20 C 0.12 2.49 5.31 86.38 0.46 2.95 16 21 N -0.71 -16.63 4.99 -466.09 -2.32 -18.96 16 22 C 0.60 16.58 7.82 86.75 0.68 17.26 16 23 O -0.57 -18.63 16.93 -3.95 -0.07 -18.69 16 24 C -0.05 -1.13 7.13 42.46 0.30 -0.82 16 25 C -0.21 -3.85 10.81 22.41 0.24 -3.61 16 26 C 0.01 0.14 12.02 83.54 1.00 1.15 16 27 N -0.37 -4.73 6.83 -57.52 -0.39 -5.13 16 28 H 0.46 2.50 8.96 -219.99 -1.97 0.53 16 29 N -0.28 -5.97 11.92 -48.17 -0.57 -6.54 16 30 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.10 2.20 6.44 -2.38 -0.02 2.18 16 35 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 36 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.12 2.70 6.70 -2.39 -0.02 2.68 16 39 H 0.09 1.75 7.10 -2.39 -0.02 1.73 16 40 H 0.34 10.31 6.42 -89.70 -0.58 9.74 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.41 9.00 7.10 -92.71 -0.66 8.35 16 47 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 48 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 Total: -1.00 -88.10 402.54 -1.31 -89.41 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -2.20 Total: 24.24 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 6.95 Total: 24.61 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -7.97 Total: -136.25 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.11 Total: -49.80 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -88.10 -1.31 -89.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371110739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.338 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds