Wall clock time and date at job start Tue Mar 31 2020 20:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47316 * 2 1 4 4 C 1.46497 * 120.00029 * 269.99792 * 3 2 1 5 5 C 1.50707 * 109.47303 * 269.99918 * 4 3 2 6 6 H 1.08002 * 119.99619 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99900 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99887 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46911 * 90.00513 * 9 7 5 11 11 H 1.48495 * 109.47257 * 210.00469 * 9 7 5 12 12 H 1.48498 * 109.47164 * 330.00925 * 9 7 5 13 13 C 1.34783 * 119.99743 * 89.99956 * 3 2 1 14 14 O 1.21278 * 119.99603 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00109 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47045 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99949 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47029 * 34.99899 * 17 16 15 19 19 C 1.52999 * 109.47083 * 275.00018 * 17 16 15 20 20 C 1.53005 * 109.47080 * 154.99757 * 17 16 15 21 21 N 1.46499 * 109.47030 * 305.00382 * 20 17 16 22 22 C 1.34773 * 119.99729 * 180.02562 * 21 20 17 23 23 O 1.21609 * 120.00356 * 359.97438 * 22 21 20 24 24 C 1.47409 * 120.00371 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.85743 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09282 * 179.97438 * 25 24 22 27 27 C 1.35559 * 108.35105 * 359.97438 * 26 25 24 28 28 N 1.35395 * 107.16121 * 0.02562 * 27 26 25 29 29 H 0.97007 * 126.44114 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47053 * 300.00126 * 1 2 3 31 31 H 1.09000 * 109.47171 * 59.99453 * 1 2 3 32 32 H 1.08996 * 109.47665 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47053 * 239.99874 * 2 1 3 34 34 H 1.09004 * 109.46900 * 120.00123 * 2 1 3 35 35 H 1.08992 * 109.46926 * 30.00180 * 4 3 2 36 36 H 1.09007 * 109.46797 * 150.00192 * 4 3 2 37 37 H 0.97001 * 119.99764 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47485 * 59.99723 * 15 13 3 39 39 H 1.09001 * 109.47276 * 299.99853 * 15 13 3 40 40 H 1.00901 * 110.99930 * 56.04388 * 16 15 13 41 41 H 1.09001 * 109.47091 * 299.99843 * 19 17 16 42 42 H 1.09000 * 109.47202 * 60.00124 * 19 17 16 43 43 H 1.09005 * 109.46684 * 180.02562 * 19 17 16 44 44 H 1.09000 * 109.47301 * 184.99755 * 20 17 16 45 45 H 1.09007 * 109.46672 * 65.00039 * 20 17 16 46 46 H 0.96993 * 120.00031 * 359.97438 * 21 20 17 47 47 H 1.08008 * 125.82275 * 179.97438 * 26 25 24 48 48 H 1.07998 * 126.42193 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 5.9776 0.8752 -4.2591 11 1 6.3923 3.2638 -4.2001 12 1 6.7737 1.9177 -2.2194 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2058 3.5889 17 6 2.0775 1.5455 4.8802 18 1 2.3284 0.4879 4.7982 19 6 0.6049 1.6916 5.2688 20 6 2.9548 2.1962 5.9517 21 7 4.3552 2.1622 5.5230 22 6 5.3147 2.6822 6.3138 23 8 5.0180 3.1799 7.3830 24 6 6.7240 2.6477 5.8828 25 7 7.1729 2.1404 4.7544 26 6 8.4949 2.2871 4.7065 27 6 8.8967 2.9085 5.8423 28 7 7.7886 3.1376 6.5858 29 1 7.7564 3.5685 7.4543 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6753 3.5161 -4.4439 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0114 2.5302 40 1 1.7860 3.0648 3.5221 41 1 0.3540 2.7492 5.3509 42 1 -0.0200 1.2280 4.5055 43 1 0.4318 1.2020 6.2272 44 1 2.8484 1.6503 6.8892 45 1 2.6440 3.2309 6.0965 46 1 4.5919 1.7649 4.6704 47 1 9.1378 1.9658 3.9003 48 1 9.9107 3.1716 6.1049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371184176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:49 Heat of formation + Delta-G solvation = -10.101956 kcal Electronic energy + Delta-G solvation = -29275.868778 eV Core-core repulsion = 25173.958263 eV Total energy + Delta-G solvation = -4101.910515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34376 -39.57223 -39.06256 -37.21637 -35.22821 -34.25949 -32.84448 -32.70962 -31.20366 -30.07096 -29.90325 -27.58659 -26.68149 -25.37996 -23.32627 -22.99211 -22.22446 -21.71629 -21.19116 -20.46573 -18.97372 -18.31671 -16.72648 -16.51780 -16.35732 -16.30493 -15.84892 -15.74963 -15.16538 -14.94218 -14.53153 -14.25207 -14.13979 -14.06724 -13.93760 -13.72822 -13.39485 -13.18038 -12.77548 -12.71553 -12.62825 -12.53082 -12.02092 -11.82892 -11.65298 -11.53760 -11.19146 -11.13390 -10.86426 -10.70994 -10.48156 -10.45873 -10.43243 -10.39260 -10.07474 -9.57568 -9.20955 -8.87920 -8.72718 -8.38579 -8.37814 -7.60775 -5.99265 -4.03400 1.21962 2.42591 2.48453 3.32818 3.34415 3.40691 3.41143 3.44475 3.50819 3.73105 4.20747 4.32084 4.51161 4.61259 4.74954 4.85212 5.02474 5.08213 5.11931 5.19914 5.27061 5.32902 5.35461 5.37119 5.50343 5.54897 5.61745 5.65845 5.72950 5.75777 5.80128 5.88472 6.02461 6.23843 6.29951 6.40668 6.47075 6.82918 6.91522 7.14548 7.35437 7.36464 7.49104 7.60802 7.73070 7.97792 8.06416 8.29163 8.48063 8.96669 9.17001 9.61823 11.08825 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.003407 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.018044 B = 8215.583371 C =11023.891652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.666 5.666 17 C 0.069 3.931 18 H 0.087 0.913 19 C -0.181 4.181 20 C 0.134 3.866 21 N -0.684 5.684 22 C 0.606 3.394 23 O -0.555 6.555 24 C 0.144 3.856 25 N -0.434 5.434 26 C -0.025 4.025 27 C -0.028 4.028 28 N -0.527 5.527 29 H 0.428 0.572 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.354 0.646 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.423 0.577 47 H 0.179 0.821 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 -6.615 20.767 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.091 4.091 16 N -0.299 5.299 17 C -0.042 4.042 18 H 0.105 0.895 19 C -0.240 4.240 20 C 0.010 3.990 21 N -0.335 5.335 22 C 0.389 3.611 23 O -0.433 6.433 24 C -0.117 4.117 25 N -0.157 5.157 26 C -0.178 4.178 27 C -0.167 4.167 28 N -0.130 5.130 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.261 0.739 47 H 0.197 0.803 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.811 -6.053 20.693 21.576 hybrid contribution 0.747 0.198 0.080 0.777 sum 1.558 -5.855 20.773 21.639 Atomic orbital electron populations 1.22222 0.96973 1.01307 1.02190 1.21392 0.93316 0.84410 1.02637 1.48247 1.64049 1.13175 1.07729 1.19238 0.96225 0.93561 0.78099 1.21452 0.96946 1.31710 1.06106 0.92392 1.24926 0.97803 0.94940 0.96441 1.69936 1.35695 1.33607 1.14350 0.86512 0.84858 0.77570 0.78616 1.20724 1.21170 1.19735 1.20161 0.78920 0.87147 0.84851 1.90688 1.44698 1.17988 1.86889 1.21947 1.00020 0.96639 0.90510 1.60180 1.63030 1.07125 0.99584 1.21853 0.93613 0.99089 0.89607 0.89469 1.22433 0.96342 1.02844 1.02372 1.21431 0.79500 1.01770 0.96341 1.45462 1.06008 1.58943 1.23099 1.16438 0.82206 0.78613 0.83823 1.90815 1.82606 1.47049 1.22879 1.22693 0.90897 1.06481 0.91657 1.70296 1.11492 1.17686 1.16189 1.22577 0.91473 1.04706 0.99032 1.22985 0.92473 1.06326 0.94908 1.42938 1.06589 1.44210 1.19219 0.73257 0.93286 0.92054 0.92246 0.89972 0.91855 0.95178 0.94012 0.92814 0.88662 0.92870 0.82529 0.91827 0.91919 0.91617 0.90854 0.91046 0.73932 0.80340 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -14.94 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.50 10.14 7.71 -10.99 -0.08 10.05 16 14 O -0.53 -13.14 15.78 5.56 0.09 -13.05 16 15 C 0.04 0.57 4.52 -4.98 -0.02 0.54 16 16 N -0.67 -8.63 5.32 -107.99 -0.57 -9.21 16 17 C 0.07 0.65 2.75 -67.71 -0.19 0.46 16 18 H 0.09 0.74 7.80 -51.93 -0.40 0.34 16 19 C -0.18 -1.36 9.16 37.16 0.34 -1.02 16 20 C 0.13 1.39 5.37 -4.04 -0.02 1.37 16 21 N -0.68 -8.67 5.38 -61.38 -0.33 -9.00 16 22 C 0.61 8.46 7.81 -12.53 -0.10 8.36 16 23 O -0.56 -8.57 17.09 5.27 0.09 -8.48 16 24 C 0.14 1.92 7.95 -154.52 -1.23 0.69 16 25 N -0.43 -6.27 10.89 -11.26 -0.12 -6.39 16 26 C -0.02 -0.28 11.85 -17.96 -0.21 -0.49 16 27 C -0.03 -0.24 12.00 -16.94 -0.20 -0.44 16 28 N -0.53 -5.23 6.14 -10.78 -0.07 -5.30 16 29 H 0.43 3.20 8.96 -40.82 -0.37 2.83 16 30 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.04 1.24 7.42 -51.92 -0.39 0.85 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.20 7.32 -51.93 -0.38 0.82 16 39 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 40 H 0.35 4.90 8.17 -39.29 -0.32 4.58 16 41 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 46 H 0.42 5.74 7.82 -40.82 -0.32 5.42 16 47 H 0.18 1.62 8.06 -52.48 -0.42 1.19 16 48 H 0.19 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -37.07 404.82 -8.71 -45.78 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.37 Total: 9.11 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -1.81 Total: 12.20 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.79 Total: -68.80 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.53 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.07 -8.71 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.677 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds