Wall clock time and date at job start Tue Mar 31 2020 20:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47316 * 2 1 4 4 C 1.46497 * 120.00029 * 269.99792 * 3 2 1 5 5 C 1.50707 * 109.47303 * 269.99918 * 4 3 2 6 6 H 1.08002 * 119.99619 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99900 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99887 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46911 * 90.00513 * 9 7 5 11 11 H 1.48495 * 109.47257 * 210.00469 * 9 7 5 12 12 H 1.48498 * 109.47164 * 330.00925 * 9 7 5 13 13 C 1.34783 * 119.99743 * 89.99956 * 3 2 1 14 14 O 1.21278 * 119.99603 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00109 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47045 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99949 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47029 * 34.99899 * 17 16 15 19 19 C 1.52999 * 109.47083 * 275.00018 * 17 16 15 20 20 C 1.53005 * 109.47080 * 154.99757 * 17 16 15 21 21 N 1.46499 * 109.47030 * 305.00382 * 20 17 16 22 22 C 1.34773 * 119.99729 * 180.02562 * 21 20 17 23 23 O 1.21609 * 120.00356 * 359.97438 * 22 21 20 24 24 C 1.47409 * 120.00371 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.85743 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09282 * 179.97438 * 25 24 22 27 27 C 1.35559 * 108.35105 * 359.97438 * 26 25 24 28 28 N 1.35395 * 107.16121 * 0.02562 * 27 26 25 29 29 H 0.97007 * 126.44114 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47053 * 300.00126 * 1 2 3 31 31 H 1.09000 * 109.47171 * 59.99453 * 1 2 3 32 32 H 1.08996 * 109.47665 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47053 * 239.99874 * 2 1 3 34 34 H 1.09004 * 109.46900 * 120.00123 * 2 1 3 35 35 H 1.08992 * 109.46926 * 30.00180 * 4 3 2 36 36 H 1.09007 * 109.46797 * 150.00192 * 4 3 2 37 37 H 0.97001 * 119.99764 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47485 * 59.99723 * 15 13 3 39 39 H 1.09001 * 109.47276 * 299.99853 * 15 13 3 40 40 H 1.00901 * 110.99930 * 56.04388 * 16 15 13 41 41 H 1.09001 * 109.47091 * 299.99843 * 19 17 16 42 42 H 1.09000 * 109.47202 * 60.00124 * 19 17 16 43 43 H 1.09005 * 109.46684 * 180.02562 * 19 17 16 44 44 H 1.09000 * 109.47301 * 184.99755 * 20 17 16 45 45 H 1.09007 * 109.46672 * 65.00039 * 20 17 16 46 46 H 0.96993 * 120.00031 * 359.97438 * 21 20 17 47 47 H 1.08008 * 125.82275 * 179.97438 * 26 25 24 48 48 H 1.07998 * 126.42193 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 5.9776 0.8752 -4.2591 11 1 6.3923 3.2638 -4.2001 12 1 6.7737 1.9177 -2.2194 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2058 3.5889 17 6 2.0775 1.5455 4.8802 18 1 2.3284 0.4879 4.7982 19 6 0.6049 1.6916 5.2688 20 6 2.9548 2.1962 5.9517 21 7 4.3552 2.1622 5.5230 22 6 5.3147 2.6822 6.3138 23 8 5.0180 3.1799 7.3830 24 6 6.7240 2.6477 5.8828 25 7 7.1729 2.1404 4.7544 26 6 8.4949 2.2871 4.7065 27 6 8.8967 2.9085 5.8423 28 7 7.7886 3.1376 6.5858 29 1 7.7564 3.5685 7.4543 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6753 3.5161 -4.4439 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0114 2.5302 40 1 1.7860 3.0648 3.5221 41 1 0.3540 2.7492 5.3509 42 1 -0.0200 1.2280 4.5055 43 1 0.4318 1.2020 6.2272 44 1 2.8484 1.6503 6.8892 45 1 2.6440 3.2309 6.0965 46 1 4.5919 1.7649 4.6704 47 1 9.1378 1.9658 3.9003 48 1 9.9107 3.1716 6.1049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371184176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:48 Heat of formation + Delta-G solvation = -39.818646 kcal Electronic energy + Delta-G solvation = -29277.157390 eV Core-core repulsion = 25173.958263 eV Total energy + Delta-G solvation = -4103.199128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.18569 -40.78585 -40.37569 -38.22617 -36.85195 -35.31005 -34.84685 -33.66693 -32.24950 -31.50609 -30.74861 -29.30281 -27.47670 -26.85607 -24.65205 -24.20397 -23.75533 -22.52911 -22.02467 -21.36579 -20.03340 -19.66270 -18.59541 -17.91157 -17.55006 -17.47762 -16.92681 -16.86681 -16.56609 -16.22895 -15.91433 -15.52264 -15.16867 -15.01604 -14.91756 -14.68400 -14.54847 -14.45701 -14.12471 -13.87385 -13.68649 -13.47589 -13.37760 -13.24669 -13.07459 -12.88499 -12.66871 -12.51422 -12.45441 -12.13677 -11.91405 -11.80810 -11.68261 -11.48734 -11.33394 -11.29750 -10.61793 -10.49938 -10.18549 -9.54013 -9.43150 -9.29595 -8.19934 -6.34321 0.32952 1.36973 1.40600 1.51260 1.58679 1.64733 1.93063 2.29798 2.37045 2.44430 2.59813 3.09368 3.19509 3.36206 3.77589 3.83121 4.04979 4.13055 4.18061 4.28925 4.35462 4.38580 4.47269 4.49040 4.52603 4.65005 4.68844 4.74303 4.87413 4.96301 4.96935 5.02521 5.02788 5.08937 5.25041 5.27949 5.37602 5.42096 5.60867 5.61633 5.88086 6.00829 6.10402 6.17631 6.33526 6.38670 6.74415 6.83233 6.89442 7.07080 7.32362 7.59086 8.86836 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.003407 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.018044 B = 8215.583371 C =11023.891652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.061 3.939 16 N -0.686 5.686 17 C 0.078 3.922 18 H 0.105 0.895 19 C -0.174 4.174 20 C 0.132 3.868 21 N -0.683 5.683 22 C 0.600 3.400 23 O -0.579 6.579 24 C 0.108 3.892 25 N -0.469 5.469 26 C -0.060 4.060 27 C 0.008 3.992 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.020 0.980 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.346 0.654 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.418 0.582 47 H 0.194 0.806 48 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -8.793 22.448 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.071 4.071 16 N -0.319 5.319 17 C -0.032 4.032 18 H 0.123 0.877 19 C -0.234 4.234 20 C 0.008 3.992 21 N -0.332 5.332 22 C 0.385 3.615 23 O -0.460 6.460 24 C -0.152 4.152 25 N -0.192 5.192 26 C -0.212 4.212 27 C -0.132 4.132 28 N -0.121 5.121 29 H 0.281 0.719 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.255 0.745 47 H 0.211 0.789 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.639 -8.293 22.403 23.944 hybrid contribution 0.525 0.895 -0.437 1.126 sum 2.164 -7.398 21.966 23.279 Atomic orbital electron populations 1.22147 0.94617 1.03429 1.01595 1.21738 0.95222 0.81394 1.03914 1.48275 1.64178 1.15107 1.06176 1.18635 0.95083 0.91374 0.80634 1.21728 0.97992 1.31769 1.06347 0.92968 1.25843 1.02298 0.94515 0.96504 1.70056 1.37751 1.34368 1.14807 0.85447 0.79191 0.78205 0.78192 1.18645 1.20720 1.19851 1.21357 0.77261 0.86695 0.86582 1.90652 1.47321 1.20869 1.87914 1.21830 1.02402 0.96065 0.86799 1.60128 1.63715 1.07174 1.00848 1.21876 0.94658 0.99304 0.87319 0.87744 1.22376 0.94602 1.02850 1.03534 1.21589 0.78589 1.01547 0.97470 1.45558 1.06751 1.58336 1.22598 1.16640 0.82860 0.78356 0.83656 1.90781 1.83105 1.48319 1.23753 1.22553 0.91283 1.08834 0.92508 1.70197 1.13358 1.18556 1.17073 1.23068 0.90817 1.06360 1.00986 1.23733 0.93713 1.02768 0.92988 1.43012 1.06229 1.43359 1.19542 0.71932 0.91987 0.94591 0.88658 0.91295 0.87959 0.96226 0.98871 0.92509 0.86567 0.89416 0.83425 0.92425 0.91253 0.89744 0.89304 0.92224 0.74514 0.78888 0.74776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.61 -25.34 2.46 -826.15 -2.03 -27.37 16 4 C 0.26 14.50 5.16 85.64 0.44 14.94 16 5 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 9 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.49 20.07 7.71 87.65 0.68 20.75 16 14 O -0.59 -30.78 15.78 -3.02 -0.05 -30.82 16 15 C 0.06 1.55 4.52 85.55 0.39 1.93 16 16 N -0.69 -17.17 5.32 -495.57 -2.63 -19.80 16 17 C 0.08 1.30 2.75 44.92 0.12 1.42 16 18 H 0.10 1.42 7.80 -2.39 -0.02 1.40 16 19 C -0.17 -2.15 9.16 71.98 0.66 -1.49 16 20 C 0.13 2.63 5.37 86.38 0.46 3.10 16 21 N -0.68 -17.38 5.38 -466.38 -2.51 -19.89 16 22 C 0.60 17.04 7.81 86.66 0.68 17.72 16 23 O -0.58 -18.08 17.09 -4.06 -0.07 -18.15 16 24 C 0.11 2.89 7.95 136.28 1.08 3.98 16 25 N -0.47 -13.60 10.89 -189.53 -2.06 -15.67 16 26 C -0.06 -1.29 11.85 83.88 0.99 -0.29 16 27 C 0.01 0.12 12.00 83.52 1.00 1.12 16 28 N -0.52 -9.61 6.14 -188.03 -1.16 -10.77 16 29 H 0.44 5.94 8.96 -92.70 -0.83 5.11 16 30 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 34 H 0.10 2.20 6.44 -2.38 -0.02 2.19 16 35 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 36 H -0.01 -0.44 7.42 -2.38 -0.02 -0.45 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.12 2.52 7.32 -2.39 -0.02 2.51 16 39 H 0.09 1.67 6.48 -2.39 -0.02 1.65 16 40 H 0.35 9.64 8.17 -89.69 -0.73 8.90 16 41 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 42 H 0.07 0.79 7.45 -2.39 -0.02 0.78 16 43 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.42 11.46 7.82 -92.71 -0.73 10.74 16 47 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 48 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -87.24 404.82 -1.02 -88.26 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -1.28 Total: 30.37 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: 8.46 Total: 32.92 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -10.11 Total: -150.59 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.12 Total: -48.98 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -87.24 -1.02 -88.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.441 kcal (2) G-P(sol) polarization free energy of solvation -87.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds