Wall clock time and date at job start Tue Mar 31 2020 20:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47177 * 2 1 4 4 C 1.46497 * 120.00133 * 270.00178 * 3 2 1 5 5 C 1.50699 * 109.47520 * 270.00138 * 4 3 2 6 6 H 1.08004 * 119.99708 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00552 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99535 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47260 * 59.99936 * 9 7 5 11 11 H 1.48508 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47083 * 299.99628 * 9 7 5 13 13 C 1.34776 * 120.00147 * 90.00417 * 3 2 1 14 14 O 1.21281 * 120.00415 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99685 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46787 * 180.02562 * 15 13 3 17 17 C 1.46906 * 110.99473 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47228 * 324.99796 * 17 16 15 19 19 C 1.52998 * 109.47161 * 85.00124 * 17 16 15 20 20 C 1.53000 * 109.46770 * 205.00132 * 17 16 15 21 21 N 1.46499 * 109.47554 * 54.99838 * 20 17 16 22 22 C 1.34771 * 120.00463 * 179.97438 * 21 20 17 23 23 O 1.21610 * 119.99702 * 0.02562 * 22 21 20 24 24 C 1.47409 * 120.00138 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.86666 * 0.03326 * 24 22 21 26 26 C 1.33099 * 109.09523 * 179.73243 * 25 24 22 27 27 C 1.35563 * 108.35134 * 359.97438 * 26 25 24 28 28 N 1.35403 * 107.16213 * 0.02562 * 27 26 25 29 29 H 0.96994 * 126.43760 * 180.02562 * 28 27 26 30 30 H 1.09003 * 109.46731 * 300.00043 * 1 2 3 31 31 H 1.09001 * 109.47360 * 59.99349 * 1 2 3 32 32 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46864 * 240.00687 * 2 1 3 34 34 H 1.08994 * 109.47553 * 120.00031 * 2 1 3 35 35 H 1.09000 * 109.46956 * 30.00478 * 4 3 2 36 36 H 1.09000 * 109.47520 * 149.99821 * 4 3 2 37 37 H 0.96995 * 119.99549 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47204 * 60.00539 * 15 13 3 39 39 H 1.09000 * 109.47484 * 300.00218 * 15 13 3 40 40 H 1.00896 * 110.99902 * 303.95564 * 16 15 13 41 41 H 1.09001 * 109.47316 * 59.99726 * 19 17 16 42 42 H 1.09006 * 109.47032 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47002 * 299.99582 * 19 17 16 44 44 H 1.09004 * 109.47057 * 294.99968 * 20 17 16 45 45 H 1.08995 * 109.47058 * 175.00100 * 20 17 16 46 46 H 0.97003 * 119.99757 * 359.97438 * 21 20 17 47 47 H 1.08003 * 125.81839 * 180.02562 * 26 25 24 48 48 H 1.07995 * 126.41509 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9133 2.0964 -3.4172 10 1 6.1400 0.6398 -3.5957 11 1 6.1608 2.7967 -4.7032 12 1 6.8412 2.6187 -2.3821 13 6 2.2431 2.0166 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2065 3.5889 17 6 2.0759 1.5461 4.8802 18 1 1.2160 0.8813 4.7982 19 6 3.3131 0.7341 5.2687 20 6 1.8027 2.6035 5.9517 21 7 0.6922 3.4575 5.5232 22 6 0.2728 4.4650 6.3140 23 8 0.8165 4.6656 7.3831 24 6 -0.8443 5.3246 5.8825 25 7 -1.5125 5.2123 4.7541 26 6 -2.4518 6.1542 4.7087 27 6 -2.3765 6.8873 5.8466 28 7 -1.3682 6.3712 6.5883 29 1 -1.0735 6.6849 7.4576 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5816 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 3.6753 3.5172 -4.4434 38 1 2.6213 0.4186 2.5302 39 1 0.9433 1.0125 2.5299 40 1 3.2575 2.5446 3.5221 41 1 4.1730 1.3989 5.3507 42 1 3.1401 0.2444 6.2271 43 1 3.5076 -0.0192 4.5053 44 1 2.6947 3.2130 6.0965 45 1 1.5424 2.1121 6.8891 46 1 0.2587 3.2978 4.6702 47 1 -3.1547 6.3076 3.9031 48 1 -3.0029 7.7262 6.1113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001371184179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:54 Heat of formation + Delta-G solvation = -10.686795 kcal Electronic energy + Delta-G solvation = -29158.610346 eV Core-core repulsion = 25056.674470 eV Total energy + Delta-G solvation = -4101.935876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39866 -39.59324 -39.06584 -37.21893 -35.22279 -34.28200 -32.88457 -32.74470 -31.21093 -30.06582 -29.93214 -27.58928 -26.69167 -25.38698 -23.36286 -22.98452 -22.22698 -21.77516 -21.19072 -20.51061 -19.01287 -18.33068 -16.72450 -16.53491 -16.40931 -16.27120 -15.88475 -15.66351 -15.28177 -15.10359 -14.48721 -14.31051 -14.17807 -14.12609 -13.82718 -13.62286 -13.41211 -13.25282 -12.85543 -12.76214 -12.62809 -12.39683 -12.01625 -11.84818 -11.75487 -11.41183 -11.17672 -11.13606 -10.89819 -10.71272 -10.51460 -10.49761 -10.48741 -10.44582 -10.10776 -9.62306 -9.24045 -8.89916 -8.77962 -8.40849 -8.36393 -7.60949 -6.01703 -4.06499 1.17128 2.38007 2.43156 3.27954 3.32456 3.36752 3.37233 3.39075 3.49900 3.72191 4.16458 4.31949 4.47586 4.61508 4.71427 4.84402 5.01924 5.03574 5.13563 5.14181 5.27556 5.32680 5.34762 5.41108 5.48696 5.54453 5.60019 5.67928 5.69783 5.75135 5.84826 5.90954 6.05399 6.26021 6.26800 6.34559 6.51492 6.83070 6.86131 7.15006 7.31318 7.36385 7.50334 7.59767 7.67599 7.95065 8.02836 8.26810 8.48467 8.93339 9.16617 9.58498 11.06272 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002586 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.212289 B =10824.622847 C =11624.478699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.667 5.667 17 C 0.069 3.931 18 H 0.087 0.913 19 C -0.181 4.181 20 C 0.134 3.866 21 N -0.684 5.684 22 C 0.605 3.395 23 O -0.554 6.554 24 C 0.145 3.855 25 N -0.436 5.436 26 C -0.026 4.026 27 C -0.028 4.028 28 N -0.527 5.527 29 H 0.429 0.571 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.356 0.644 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.422 0.578 47 H 0.179 0.821 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -2.410 20.754 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.092 4.092 16 N -0.300 5.300 17 C -0.041 4.041 18 H 0.105 0.895 19 C -0.241 4.241 20 C 0.009 3.991 21 N -0.335 5.335 22 C 0.388 3.612 23 O -0.432 6.432 24 C -0.116 4.116 25 N -0.158 5.158 26 C -0.179 4.179 27 C -0.167 4.167 28 N -0.129 5.129 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.176 0.824 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.260 0.740 47 H 0.196 0.804 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.889 -1.885 20.672 23.441 hybrid contribution 1.378 -0.034 0.102 1.383 sum -9.511 -1.920 20.775 22.929 Atomic orbital electron populations 1.22226 0.96773 1.01300 1.02476 1.21394 0.93537 0.84341 1.02456 1.48242 1.64079 1.13152 1.07721 1.19232 0.96064 0.93692 0.78129 1.21393 0.96978 1.31877 1.06233 0.92677 1.24932 0.97759 0.94962 0.96441 1.69925 1.35677 1.33372 1.14351 0.86577 0.84920 0.78171 0.77835 1.20325 1.21187 1.20232 1.20155 0.78981 0.87082 0.84852 1.90689 1.45024 1.17677 1.86894 1.21952 1.02216 0.94451 0.90534 1.60212 1.33297 1.36930 0.99578 1.21847 0.98588 0.94087 0.89619 0.89508 1.22437 0.98358 1.00885 1.02378 1.21439 0.89503 0.91751 0.96368 1.45457 1.34795 1.30199 1.23017 1.16446 0.80840 0.80028 0.83869 1.90821 1.57820 1.71710 1.22880 1.22698 1.02155 0.95188 0.91567 1.70277 1.06336 1.22823 1.16372 1.22561 1.00949 0.95367 0.99021 1.22992 0.95403 1.03358 0.94926 1.42947 1.25986 1.24799 1.19182 0.73213 0.92945 0.92002 0.92303 0.90075 0.92002 0.95122 0.93881 0.92687 0.92819 0.88718 0.82361 0.91777 0.91633 0.91858 0.91004 0.90836 0.74024 0.80351 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.50 10.15 7.71 -10.98 -0.08 10.07 16 14 O -0.53 -13.15 15.78 5.56 0.09 -13.06 16 15 C 0.04 0.56 4.52 -4.97 -0.02 0.54 16 16 N -0.67 -8.64 5.32 -107.98 -0.57 -9.22 16 17 C 0.07 0.65 2.75 -67.71 -0.19 0.46 16 18 H 0.09 0.72 7.80 -51.93 -0.40 0.32 16 19 C -0.18 -1.44 9.16 37.16 0.34 -1.10 16 20 C 0.13 1.37 5.37 -4.04 -0.02 1.35 16 21 N -0.68 -8.28 5.38 -61.39 -0.33 -8.61 16 22 C 0.60 8.10 7.81 -12.53 -0.10 8.00 16 23 O -0.55 -8.34 17.09 5.27 0.09 -8.25 16 24 C 0.15 1.82 7.95 -154.52 -1.23 0.59 16 25 N -0.44 -5.77 10.89 -11.26 -0.12 -5.89 16 26 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 27 C -0.03 -0.21 12.00 -16.93 -0.20 -0.41 16 28 N -0.53 -4.85 6.14 -10.78 -0.07 -4.91 16 29 H 0.43 2.95 8.96 -40.82 -0.37 2.59 16 30 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.91 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.05 0.65 6.69 -51.93 -0.35 0.30 16 39 H 0.09 1.13 7.10 -51.93 -0.37 0.77 16 40 H 0.36 5.10 8.17 -39.29 -0.32 4.77 16 41 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.42 5.37 7.82 -40.82 -0.32 5.05 16 47 H 0.18 1.36 8.06 -52.48 -0.42 0.93 16 48 H 0.19 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -36.70 404.81 -8.71 -45.41 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.37 Total: 8.61 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.81 Total: 11.72 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.79 Total: -67.42 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.18 Total: -21.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.70 -8.71 -45.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.721 kcal (2) G-P(sol) polarization free energy of solvation -36.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds