Wall clock time and date at job start Tue Mar 31 2020 20:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47177 * 2 1 4 4 C 1.46497 * 120.00133 * 270.00178 * 3 2 1 5 5 C 1.50699 * 109.47520 * 270.00138 * 4 3 2 6 6 H 1.08004 * 119.99708 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00552 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99535 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47260 * 59.99936 * 9 7 5 11 11 H 1.48508 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47083 * 299.99628 * 9 7 5 13 13 C 1.34776 * 120.00147 * 90.00417 * 3 2 1 14 14 O 1.21281 * 120.00415 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99685 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46787 * 180.02562 * 15 13 3 17 17 C 1.46906 * 110.99473 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47228 * 324.99796 * 17 16 15 19 19 C 1.52998 * 109.47161 * 85.00124 * 17 16 15 20 20 C 1.53000 * 109.46770 * 205.00132 * 17 16 15 21 21 N 1.46499 * 109.47554 * 54.99838 * 20 17 16 22 22 C 1.34771 * 120.00463 * 179.97438 * 21 20 17 23 23 O 1.21610 * 119.99702 * 0.02562 * 22 21 20 24 24 C 1.47409 * 120.00138 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.86666 * 0.03326 * 24 22 21 26 26 C 1.33099 * 109.09523 * 179.73243 * 25 24 22 27 27 C 1.35563 * 108.35134 * 359.97438 * 26 25 24 28 28 N 1.35403 * 107.16213 * 0.02562 * 27 26 25 29 29 H 0.96994 * 126.43760 * 180.02562 * 28 27 26 30 30 H 1.09003 * 109.46731 * 300.00043 * 1 2 3 31 31 H 1.09001 * 109.47360 * 59.99349 * 1 2 3 32 32 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46864 * 240.00687 * 2 1 3 34 34 H 1.08994 * 109.47553 * 120.00031 * 2 1 3 35 35 H 1.09000 * 109.46956 * 30.00478 * 4 3 2 36 36 H 1.09000 * 109.47520 * 149.99821 * 4 3 2 37 37 H 0.96995 * 119.99549 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47204 * 60.00539 * 15 13 3 39 39 H 1.09000 * 109.47484 * 300.00218 * 15 13 3 40 40 H 1.00896 * 110.99902 * 303.95564 * 16 15 13 41 41 H 1.09001 * 109.47316 * 59.99726 * 19 17 16 42 42 H 1.09006 * 109.47032 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47002 * 299.99582 * 19 17 16 44 44 H 1.09004 * 109.47057 * 294.99968 * 20 17 16 45 45 H 1.08995 * 109.47058 * 175.00100 * 20 17 16 46 46 H 0.97003 * 119.99757 * 359.97438 * 21 20 17 47 47 H 1.08003 * 125.81839 * 180.02562 * 26 25 24 48 48 H 1.07995 * 126.41509 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9133 2.0964 -3.4172 10 1 6.1400 0.6398 -3.5957 11 1 6.1608 2.7967 -4.7032 12 1 6.8412 2.6187 -2.3821 13 6 2.2431 2.0166 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2065 3.5889 17 6 2.0759 1.5461 4.8802 18 1 1.2160 0.8813 4.7982 19 6 3.3131 0.7341 5.2687 20 6 1.8027 2.6035 5.9517 21 7 0.6922 3.4575 5.5232 22 6 0.2728 4.4650 6.3140 23 8 0.8165 4.6656 7.3831 24 6 -0.8443 5.3246 5.8825 25 7 -1.5125 5.2123 4.7541 26 6 -2.4518 6.1542 4.7087 27 6 -2.3765 6.8873 5.8466 28 7 -1.3682 6.3712 6.5883 29 1 -1.0735 6.6849 7.4576 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5816 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 3.6753 3.5172 -4.4434 38 1 2.6213 0.4186 2.5302 39 1 0.9433 1.0125 2.5299 40 1 3.2575 2.5446 3.5221 41 1 4.1730 1.3989 5.3507 42 1 3.1401 0.2444 6.2271 43 1 3.5076 -0.0192 4.5053 44 1 2.6947 3.2130 6.0965 45 1 1.5424 2.1121 6.8891 46 1 0.2587 3.2978 4.6702 47 1 -3.1547 6.3076 3.9031 48 1 -3.0029 7.7262 6.1113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001371184179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:52 Heat of formation + Delta-G solvation = -40.051625 kcal Electronic energy + Delta-G solvation = -29159.883700 eV Core-core repulsion = 25056.674470 eV Total energy + Delta-G solvation = -4103.209230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.17269 -40.78321 -40.37052 -38.22560 -36.85058 -35.30610 -34.85510 -33.65428 -32.25095 -31.50038 -30.73664 -29.30665 -27.47864 -26.85568 -24.65044 -24.20833 -23.74136 -22.51602 -22.02115 -21.35772 -20.04409 -19.65659 -18.59784 -17.91152 -17.50087 -17.44071 -16.94357 -16.87469 -16.54900 -16.39080 -15.97985 -15.28565 -15.14510 -14.99384 -14.88975 -14.67741 -14.59330 -14.48410 -14.19378 -13.85844 -13.68903 -13.45843 -13.38468 -13.24291 -13.11629 -12.86293 -12.65219 -12.51424 -12.45389 -12.11292 -11.91937 -11.81488 -11.71288 -11.48116 -11.32429 -11.29285 -10.63030 -10.51580 -10.18077 -9.52735 -9.39345 -9.33934 -8.20509 -6.35691 0.33873 1.36292 1.40791 1.47981 1.59711 1.65899 1.93780 2.28053 2.37810 2.43883 2.60387 3.08477 3.19585 3.36795 3.77694 3.83210 4.05482 4.12814 4.17612 4.30611 4.36880 4.41340 4.44076 4.48456 4.53086 4.64852 4.71214 4.74305 4.86530 4.97648 4.99125 5.00513 5.03998 5.09314 5.25530 5.27672 5.37675 5.44233 5.60489 5.62341 5.87845 5.99995 6.09257 6.17990 6.30874 6.39706 6.72996 6.84235 6.89441 7.08007 7.30934 7.58978 8.86229 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002586 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.212289 B =10824.622847 C =11624.478699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.060 3.940 16 N -0.684 5.684 17 C 0.079 3.921 18 H 0.107 0.893 19 C -0.176 4.176 20 C 0.132 3.868 21 N -0.682 5.682 22 C 0.600 3.400 23 O -0.580 6.580 24 C 0.107 3.893 25 N -0.466 5.466 26 C -0.058 4.058 27 C 0.006 3.994 28 N -0.519 5.519 29 H 0.439 0.561 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.019 0.981 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.345 0.655 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.418 0.582 47 H 0.197 0.803 48 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -4.187 22.407 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.072 4.072 16 N -0.317 5.317 17 C -0.031 4.031 18 H 0.125 0.875 19 C -0.235 4.235 20 C 0.009 3.991 21 N -0.332 5.332 22 C 0.384 3.616 23 O -0.461 6.461 24 C -0.152 4.152 25 N -0.189 5.189 26 C -0.210 4.210 27 C -0.134 4.134 28 N -0.122 5.122 29 H 0.280 0.720 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.037 0.963 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.256 0.744 47 H 0.214 0.786 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.400 -3.740 22.355 25.371 hybrid contribution 1.415 0.599 -0.407 1.589 sum -9.986 -3.142 21.948 24.317 Atomic orbital electron populations 1.22159 0.94711 1.03415 1.01666 1.21736 0.95205 0.81346 1.03884 1.48272 1.64210 1.15082 1.06165 1.18629 0.95125 0.91357 0.80632 1.21690 0.97891 1.31890 1.06464 0.92783 1.25884 1.02397 0.94525 0.96517 1.70059 1.37842 1.34247 1.14812 0.85472 0.79018 0.79037 0.77301 1.18339 1.20483 1.20352 1.21348 0.77310 0.86641 0.86578 1.90654 1.47631 1.20572 1.87915 1.21848 1.04288 0.94196 0.86825 1.60174 1.32739 1.37902 1.00858 1.21874 1.00078 0.93814 0.87349 0.87502 1.22385 0.97090 1.00522 1.03514 1.21565 0.88475 0.91669 0.97436 1.45533 1.34899 1.30135 1.22595 1.16664 0.81015 0.80248 0.83655 1.90786 1.58885 1.72542 1.23851 1.22527 1.03201 0.96971 0.92530 1.70186 1.07374 1.24322 1.17043 1.23090 1.01327 0.95728 1.00904 1.23748 0.93775 1.02732 0.93119 1.43028 1.25820 1.23871 1.19494 0.72004 0.91960 0.94652 0.88626 0.91264 0.87901 0.96345 0.98984 0.92476 0.89943 0.86013 0.83568 0.92594 0.89665 0.91464 0.92376 0.89295 0.74434 0.78607 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.14 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.61 -25.35 2.46 -826.17 -2.03 -27.38 16 4 C 0.26 14.51 5.16 85.63 0.44 14.95 16 5 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.32 5.46 84.65 0.46 0.79 16 8 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.49 20.08 7.71 87.66 0.68 20.76 16 14 O -0.59 -30.81 15.78 -3.03 -0.05 -30.85 16 15 C 0.06 1.53 4.52 85.56 0.39 1.92 16 16 N -0.68 -17.14 5.32 -495.54 -2.63 -19.77 16 17 C 0.08 1.31 2.75 44.91 0.12 1.43 16 18 H 0.11 1.40 7.80 -2.39 -0.02 1.38 16 19 C -0.18 -2.34 9.16 71.98 0.66 -1.68 16 20 C 0.13 2.61 5.37 86.38 0.46 3.07 16 21 N -0.68 -16.62 5.38 -466.40 -2.51 -19.13 16 22 C 0.60 16.40 7.81 86.66 0.68 17.08 16 23 O -0.58 -17.78 17.09 -4.06 -0.07 -17.85 16 24 C 0.11 2.72 7.95 136.28 1.08 3.80 16 25 N -0.47 -12.45 10.89 -189.52 -2.06 -14.51 16 26 C -0.06 -1.11 11.85 83.88 0.99 -0.12 16 27 C 0.01 0.08 12.00 83.52 1.00 1.09 16 28 N -0.52 -8.98 6.14 -188.02 -1.16 -10.14 16 29 H 0.44 5.54 8.96 -92.71 -0.83 4.71 16 30 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 35 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 36 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 38 H 0.08 1.67 6.69 -2.39 -0.02 1.66 16 39 H 0.12 2.48 7.10 -2.39 -0.02 2.47 16 40 H 0.35 9.96 8.17 -89.70 -0.73 9.22 16 41 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 42 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 0.87 7.45 -2.39 -0.02 0.85 16 44 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.42 10.76 7.82 -92.71 -0.72 10.04 16 47 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 48 H 0.23 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -86.52 404.81 -1.02 -87.55 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -1.28 Total: 29.59 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 8.46 Total: 32.16 kcal Atomic # 7 Polarization: -137.85 SS G_CDS: -10.11 Total: -147.96 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -0.12 Total: -48.71 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -86.52 -1.02 -87.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001371184179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.496 kcal (2) G-P(sol) polarization free energy of solvation -86.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds