Wall clock time and date at job start Tue Mar 31 2020 20:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47361 * 2 1 4 4 C 1.46502 * 119.99900 * 270.00079 * 3 2 1 5 5 C 1.50700 * 109.46959 * 269.99620 * 4 3 2 6 6 H 1.08001 * 119.99855 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00248 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99790 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47079 * 90.00193 * 9 7 5 11 11 H 1.48502 * 109.46766 * 210.00082 * 9 7 5 12 12 H 1.48498 * 109.46974 * 329.99894 * 9 7 5 13 13 C 1.34777 * 120.00183 * 89.99768 * 3 2 1 14 14 O 1.21273 * 120.00451 * 180.02562 * 13 3 2 15 15 C 1.50710 * 119.99604 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46709 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99953 * 293.95147 * 16 15 13 18 18 C 1.46896 * 110.99884 * 169.99692 * 16 15 13 19 19 C 1.53002 * 109.47243 * 189.99718 * 18 16 15 20 20 N 1.46506 * 109.47035 * 179.97438 * 19 18 16 21 21 C 1.34777 * 119.99873 * 179.97438 * 20 19 18 22 22 O 1.21615 * 119.99846 * 0.02562 * 21 20 19 23 23 C 1.47406 * 119.99961 * 180.02562 * 21 20 19 24 24 N 1.31607 * 125.86409 * 359.69282 * 23 21 20 25 25 C 1.33108 * 109.09539 * 179.83182 * 24 23 21 26 26 C 1.35561 * 108.34614 * 0.43501 * 25 24 23 27 27 N 1.35397 * 107.16436 * 359.73619 * 26 25 24 28 28 H 0.97004 * 126.44259 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47293 * 300.00095 * 1 2 3 31 31 H 1.09007 * 109.47334 * 60.00111 * 1 2 3 32 32 H 1.09003 * 109.47293 * 239.99905 * 2 1 3 33 33 H 1.09001 * 109.46823 * 120.00347 * 2 1 3 34 34 H 1.08994 * 109.47061 * 29.99751 * 4 3 2 35 35 H 1.08996 * 109.47161 * 150.00254 * 4 3 2 36 36 H 0.97000 * 120.00300 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47124 * 59.99525 * 15 13 3 38 38 H 1.08996 * 109.46688 * 299.99388 * 15 13 3 39 39 H 1.08996 * 109.46988 * 296.04665 * 17 16 15 40 40 H 1.09000 * 109.47343 * 56.05204 * 17 16 15 41 41 H 1.09000 * 109.46850 * 176.05026 * 17 16 15 42 42 H 1.09004 * 109.47041 * 69.99929 * 18 16 15 43 43 H 1.09004 * 109.47535 * 309.99968 * 18 16 15 44 44 H 1.09004 * 109.46930 * 60.00143 * 19 18 16 45 45 H 1.09000 * 109.47312 * 300.00087 * 19 18 16 46 46 H 0.96999 * 120.00080 * 0.02562 * 20 19 18 47 47 H 1.07994 * 125.82417 * 180.20672 * 25 24 23 48 48 H 1.08002 * 126.41322 * 179.77381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2301 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 3.3488 3.1247 -3.6186 9 14 5.9132 2.0954 -3.4175 10 1 5.9760 0.8742 -4.2601 11 1 6.3923 3.2625 -4.2008 12 1 6.7735 1.9157 -2.2205 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2057 3.5888 17 6 3.7477 2.5094 3.6266 18 6 1.8586 1.6397 4.8667 19 6 1.9781 2.6988 5.9644 20 7 1.5265 2.1345 7.2387 21 6 1.5431 2.8906 8.3543 22 8 1.9326 4.0416 8.3029 23 6 1.0892 2.3227 9.6365 24 7 0.6417 1.0991 9.8225 25 6 0.3283 0.9404 11.1064 26 6 0.5769 2.1054 11.7534 27 7 1.0553 2.9781 10.8353 28 1 1.3232 3.8962 10.9978 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6749 3.5152 -4.4445 37 1 2.6226 0.4186 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.3073 1.5946 3.8213 40 1 4.0561 2.9272 2.6683 41 1 3.9456 3.2318 4.4185 42 1 2.4777 0.7798 5.1226 43 1 0.8189 1.3250 4.7771 44 1 1.3590 3.5587 5.7085 45 1 3.0178 3.0135 6.0541 46 1 1.2162 1.2164 7.2798 47 1 -0.0613 0.0387 11.5552 48 1 0.4229 2.3006 12.8044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001377146869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:44 Heat of formation + Delta-G solvation = 3.125064 kcal Electronic energy + Delta-G solvation = -28483.709356 eV Core-core repulsion = 24382.372408 eV Total energy + Delta-G solvation = -4101.336949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67051 -39.76365 -39.27259 -37.20236 -35.30906 -34.80623 -33.13652 -32.78355 -30.85246 -30.08557 -29.38889 -28.19875 -26.70621 -25.20451 -23.57004 -22.98553 -22.30029 -22.04313 -21.26646 -20.78063 -19.21741 -18.26964 -16.95806 -16.53861 -16.50775 -16.31970 -16.22392 -15.63636 -15.52360 -15.03150 -14.70558 -14.43840 -14.34008 -14.27478 -14.09841 -13.70711 -13.56700 -13.40579 -13.25372 -12.69846 -12.40790 -12.09161 -11.96021 -11.74513 -11.51020 -11.28614 -11.27470 -11.10341 -10.88697 -10.82782 -10.77255 -10.71008 -10.68699 -10.50507 -10.09642 -9.60940 -9.47410 -9.05075 -8.88793 -8.41936 -8.19829 -7.61567 -6.02508 -4.07234 0.91515 2.11182 2.14811 3.01677 3.03004 3.30502 3.37316 3.40384 3.48163 3.67553 3.91913 4.26861 4.46356 4.48674 4.65564 4.75557 4.86611 4.88601 5.07298 5.23868 5.27225 5.31763 5.37699 5.42959 5.49885 5.61231 5.66385 5.67914 5.71643 5.79515 5.84266 6.00295 6.03959 6.07375 6.24289 6.40404 6.49361 6.60563 6.88764 6.99067 7.07040 7.16074 7.35543 7.48951 7.59143 7.74981 7.94336 8.25926 8.47149 8.92944 9.16409 9.57929 11.05398 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.001839 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.765160 B =15225.465329 C =15902.401414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.014 3.986 18 C 0.045 3.955 19 C 0.122 3.878 20 N -0.702 5.702 21 C 0.606 3.394 22 O -0.538 6.538 23 C 0.145 3.855 24 N -0.444 5.444 25 C -0.028 4.028 26 C -0.024 4.024 27 N -0.524 5.524 28 H 0.431 0.569 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.020 0.980 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.412 0.588 47 H 0.180 0.820 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -7.884 28.321 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.134 4.134 18 C -0.084 4.084 19 C -0.002 4.002 20 N -0.353 5.353 21 C 0.389 3.611 22 O -0.414 6.414 23 C -0.116 4.116 24 N -0.166 5.166 25 C -0.181 4.181 26 C -0.163 4.163 27 N -0.126 5.126 28 H 0.271 0.729 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.248 0.752 47 H 0.197 0.803 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.451 -6.457 27.293 29.020 hybrid contribution 1.335 -0.523 0.625 1.564 sum -6.116 -6.980 27.918 29.420 Atomic orbital electron populations 1.22227 0.96803 1.01338 1.02401 1.21402 0.93511 0.84348 1.02526 1.48258 1.64123 1.13162 1.07684 1.19246 0.96128 0.93699 0.78088 1.21431 0.96984 1.31812 1.06202 0.92575 1.24933 0.97774 0.94964 0.96443 1.69930 1.35633 1.33451 1.14284 0.86515 0.84785 0.77645 0.78565 1.20705 1.21104 1.19958 1.20071 0.78942 0.87093 0.84677 1.90643 1.44803 1.17686 1.86733 1.22095 1.02326 0.94165 0.90744 1.61480 1.18177 1.43761 1.00872 1.22676 0.85880 0.99584 1.05222 1.22241 1.01474 0.95244 0.89446 1.21440 1.01265 0.97060 0.80391 1.45543 1.65379 1.16796 1.07615 1.16399 0.78222 0.84925 0.81511 1.90882 1.47970 1.16904 1.85662 1.22668 1.10175 0.90143 0.88646 1.70207 1.13311 1.14229 1.18889 1.22534 1.07001 0.98933 0.89627 1.23037 1.05122 0.91453 0.96692 1.42967 1.46878 1.14929 1.07835 0.72914 0.92244 0.93047 0.91991 0.89994 0.91985 0.95096 0.93846 0.92747 0.92397 0.88484 0.96176 0.88391 0.91403 0.94059 0.89943 0.89701 0.90621 0.75222 0.80304 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.15 0.38 -1.81 16 2 C 0.11 1.65 5.93 -4.05 -0.02 1.62 16 3 N -0.60 -12.39 2.46 -175.06 -0.43 -12.82 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.32 7.36 -10.98 -0.08 10.24 16 14 O -0.52 -12.96 13.91 5.56 0.08 -12.88 16 15 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 16 N -0.52 -7.38 4.50 -244.37 -1.10 -8.48 16 17 C 0.01 0.21 8.96 60.06 0.54 0.74 16 18 C 0.04 0.46 5.07 -3.83 -0.02 0.44 16 19 C 0.12 1.30 5.60 -4.04 -0.02 1.28 16 20 N -0.70 -6.75 5.55 -61.38 -0.34 -7.09 16 21 C 0.61 6.81 7.81 -12.53 -0.10 6.71 16 22 O -0.54 -7.55 17.09 5.26 0.09 -7.46 16 23 C 0.15 1.40 7.95 -154.52 -1.23 0.17 16 24 N -0.44 -4.16 10.89 -11.26 -0.12 -4.28 16 25 C -0.03 -0.18 11.85 -17.96 -0.21 -0.40 16 26 C -0.02 -0.11 12.00 -16.94 -0.20 -0.32 16 27 N -0.52 -3.53 6.14 -10.78 -0.07 -3.60 16 28 H 0.43 2.11 8.96 -40.82 -0.37 1.74 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 0.76 7.38 -51.93 -0.38 0.37 16 38 H 0.10 1.19 6.98 -51.93 -0.36 0.83 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 1.83 5.83 -51.93 -0.30 1.53 16 41 H 0.07 0.90 6.47 -51.93 -0.34 0.57 16 42 H 0.04 0.38 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 0.87 6.55 -51.93 -0.34 0.53 16 46 H 0.41 3.27 8.15 -40.82 -0.33 2.94 16 47 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.19 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -36.63 399.90 -8.86 -45.49 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.27 Total: 1.99 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -1.44 Total: 12.11 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -1.32 Total: -62.12 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.63 -8.86 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377146869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds