Wall clock time and date at job start Tue Mar 31 2020 20:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47361 * 2 1 4 4 C 1.46502 * 119.99900 * 270.00079 * 3 2 1 5 5 C 1.50700 * 109.46959 * 269.99620 * 4 3 2 6 6 H 1.08001 * 119.99855 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00248 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99790 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47079 * 90.00193 * 9 7 5 11 11 H 1.48502 * 109.46766 * 210.00082 * 9 7 5 12 12 H 1.48498 * 109.46974 * 329.99894 * 9 7 5 13 13 C 1.34777 * 120.00183 * 89.99768 * 3 2 1 14 14 O 1.21273 * 120.00451 * 180.02562 * 13 3 2 15 15 C 1.50710 * 119.99604 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46709 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99953 * 293.95147 * 16 15 13 18 18 C 1.46896 * 110.99884 * 169.99692 * 16 15 13 19 19 C 1.53002 * 109.47243 * 189.99718 * 18 16 15 20 20 N 1.46506 * 109.47035 * 179.97438 * 19 18 16 21 21 C 1.34777 * 119.99873 * 179.97438 * 20 19 18 22 22 O 1.21615 * 119.99846 * 0.02562 * 21 20 19 23 23 C 1.47406 * 119.99961 * 180.02562 * 21 20 19 24 24 N 1.31607 * 125.86409 * 359.69282 * 23 21 20 25 25 C 1.33108 * 109.09539 * 179.83182 * 24 23 21 26 26 C 1.35561 * 108.34614 * 0.43501 * 25 24 23 27 27 N 1.35397 * 107.16436 * 359.73619 * 26 25 24 28 28 H 0.97004 * 126.44259 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47293 * 300.00095 * 1 2 3 31 31 H 1.09007 * 109.47334 * 60.00111 * 1 2 3 32 32 H 1.09003 * 109.47293 * 239.99905 * 2 1 3 33 33 H 1.09001 * 109.46823 * 120.00347 * 2 1 3 34 34 H 1.08994 * 109.47061 * 29.99751 * 4 3 2 35 35 H 1.08996 * 109.47161 * 150.00254 * 4 3 2 36 36 H 0.97000 * 120.00300 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47124 * 59.99525 * 15 13 3 38 38 H 1.08996 * 109.46688 * 299.99388 * 15 13 3 39 39 H 1.08996 * 109.46988 * 296.04665 * 17 16 15 40 40 H 1.09000 * 109.47343 * 56.05204 * 17 16 15 41 41 H 1.09000 * 109.46850 * 176.05026 * 17 16 15 42 42 H 1.09004 * 109.47041 * 69.99929 * 18 16 15 43 43 H 1.09004 * 109.47535 * 309.99968 * 18 16 15 44 44 H 1.09004 * 109.46930 * 60.00143 * 19 18 16 45 45 H 1.09000 * 109.47312 * 300.00087 * 19 18 16 46 46 H 0.96999 * 120.00080 * 0.02562 * 20 19 18 47 47 H 1.07994 * 125.82417 * 180.20672 * 25 24 23 48 48 H 1.08002 * 126.41322 * 179.77381 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2301 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 3.3488 3.1247 -3.6186 9 14 5.9132 2.0954 -3.4175 10 1 5.9760 0.8742 -4.2601 11 1 6.3923 3.2625 -4.2008 12 1 6.7735 1.9157 -2.2205 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2057 3.5888 17 6 3.7477 2.5094 3.6266 18 6 1.8586 1.6397 4.8667 19 6 1.9781 2.6988 5.9644 20 7 1.5265 2.1345 7.2387 21 6 1.5431 2.8906 8.3543 22 8 1.9326 4.0416 8.3029 23 6 1.0892 2.3227 9.6365 24 7 0.6417 1.0991 9.8225 25 6 0.3283 0.9404 11.1064 26 6 0.5769 2.1054 11.7534 27 7 1.0553 2.9781 10.8353 28 1 1.3232 3.8962 10.9978 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6749 3.5152 -4.4445 37 1 2.6226 0.4186 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.3073 1.5946 3.8213 40 1 4.0561 2.9272 2.6683 41 1 3.9456 3.2318 4.4185 42 1 2.4777 0.7798 5.1226 43 1 0.8189 1.3250 4.7771 44 1 1.3590 3.5587 5.7085 45 1 3.0178 3.0135 6.0541 46 1 1.2162 1.2164 7.2798 47 1 -0.0613 0.0387 11.5552 48 1 0.4229 2.3006 12.8044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001377146869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:43 Heat of formation + Delta-G solvation = -26.310716 kcal Electronic energy + Delta-G solvation = -28484.985788 eV Core-core repulsion = 24382.372408 eV Total energy + Delta-G solvation = -4102.613380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.19820 -40.91542 -40.46445 -38.35384 -36.84027 -35.81608 -34.88283 -33.69053 -31.75773 -31.44623 -30.36378 -29.40301 -28.34476 -26.33335 -24.87064 -24.26109 -23.62823 -22.53304 -22.25865 -21.47695 -19.91014 -19.76371 -18.60332 -18.00986 -17.55316 -17.41819 -17.08947 -16.95405 -16.59442 -16.30985 -16.04001 -15.57065 -15.35901 -15.04296 -14.85722 -14.72239 -14.60654 -14.53034 -14.44555 -14.19717 -13.94272 -13.51683 -13.27049 -13.10015 -12.98852 -12.68167 -12.64081 -12.55775 -12.45636 -12.16232 -12.11390 -11.79918 -11.68478 -11.59473 -11.37380 -11.32888 -10.63183 -10.47759 -10.31361 -9.55361 -9.37628 -9.28520 -8.20806 -6.35721 0.29439 1.35768 1.39032 1.46798 1.49152 1.61968 1.92249 2.22531 2.32680 2.39267 2.54967 3.06157 3.08426 3.31231 3.74263 3.79140 4.03173 4.06721 4.13439 4.26801 4.37417 4.37458 4.45369 4.47804 4.48976 4.56315 4.58850 4.70714 4.81516 4.90452 4.97654 4.99198 5.03350 5.09353 5.18576 5.20184 5.25764 5.43689 5.60863 5.61703 5.84032 5.93016 6.07024 6.09218 6.12610 6.29022 6.73063 6.78766 6.88550 6.99962 7.30932 7.59399 8.85846 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.001839 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.765160 B =15225.465329 C =15902.401414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.053 3.947 16 N -0.542 5.542 17 C 0.021 3.979 18 C 0.054 3.946 19 C 0.128 3.872 20 N -0.690 5.690 21 C 0.603 3.397 22 O -0.578 6.578 23 C 0.106 3.894 24 N -0.458 5.458 25 C -0.050 4.050 26 C 0.005 3.995 27 N -0.521 5.521 28 H 0.438 0.562 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.422 0.578 47 H 0.205 0.795 48 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -10.941 31.219 34.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.077 4.077 16 N -0.267 5.267 17 C -0.127 4.127 18 C -0.074 4.074 19 C 0.004 3.996 20 N -0.342 5.342 21 C 0.388 3.612 22 O -0.457 6.457 23 C -0.153 4.153 24 N -0.181 5.181 25 C -0.203 4.203 26 C -0.136 4.136 27 N -0.123 5.123 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.260 0.740 47 H 0.221 0.779 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.869 -9.584 30.197 32.644 hybrid contribution 1.375 0.416 -0.144 1.444 sum -6.494 -9.168 30.053 32.084 Atomic orbital electron populations 1.22160 0.94605 1.03469 1.01692 1.21746 0.95291 0.81337 1.03888 1.48286 1.64297 1.15102 1.06113 1.18646 0.95129 0.91437 0.80562 1.21714 0.97933 1.31803 1.06401 0.92851 1.25869 1.02342 0.94556 0.96533 1.70058 1.37741 1.34307 1.14753 0.85422 0.79083 0.78142 0.78188 1.18770 1.20810 1.19778 1.21222 0.77425 0.86726 0.86363 1.90620 1.47160 1.20483 1.87721 1.22014 1.04767 0.93756 0.87155 1.61347 1.17711 1.45062 1.02557 1.22490 0.86894 1.00438 1.02856 1.22232 1.03042 0.95177 0.86929 1.21251 1.00156 0.96917 0.81230 1.45395 1.64841 1.17057 1.06902 1.16690 0.77555 0.84497 0.82428 1.90849 1.49944 1.18525 1.86377 1.22293 1.13198 0.90979 0.88846 1.70137 1.13246 1.14120 1.20622 1.23138 1.07556 1.00692 0.88930 1.23814 1.01647 0.90111 0.97983 1.43085 1.46329 1.15489 1.07433 0.72122 0.88585 0.91905 0.94598 0.91206 0.88009 0.96226 0.98824 0.92505 0.89684 0.85166 0.94286 0.92915 0.90732 0.91745 0.87710 0.91733 0.91791 0.74047 0.77851 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.61 -25.43 2.46 -826.17 -2.03 -27.45 16 4 C 0.26 14.44 5.16 85.63 0.44 14.88 16 5 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.49 20.38 7.36 87.66 0.65 21.02 16 14 O -0.58 -30.39 13.91 -3.01 -0.04 -30.44 16 15 C 0.05 1.43 4.00 85.56 0.34 1.77 16 16 N -0.54 -14.72 4.50 -927.05 -4.17 -18.89 16 17 C 0.02 0.63 8.96 127.69 1.14 1.77 16 18 C 0.05 0.96 5.07 86.30 0.44 1.40 16 19 C 0.13 2.68 5.60 86.38 0.48 3.16 16 20 N -0.69 -12.75 5.55 -466.36 -2.59 -15.34 16 21 C 0.60 13.61 7.81 86.66 0.68 14.28 16 22 O -0.58 -16.79 17.09 -4.08 -0.07 -16.86 16 23 C 0.11 1.95 7.95 136.28 1.08 3.03 16 24 N -0.46 -7.84 10.89 -189.53 -2.06 -9.91 16 25 C -0.05 -0.52 11.85 83.88 0.99 0.47 16 26 C 0.00 0.03 12.00 83.52 1.00 1.03 16 27 N -0.52 -6.16 6.14 -188.03 -1.16 -7.32 16 28 H 0.44 3.77 8.96 -92.71 -0.83 2.94 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 33 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.42 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.09 1.86 7.38 -2.39 -0.02 1.84 16 38 H 0.13 2.63 6.98 -2.39 -0.02 2.62 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 2.06 5.83 -2.39 -0.01 2.05 16 41 H 0.07 2.04 6.47 -2.39 -0.02 2.02 16 42 H 0.06 0.91 8.12 -2.38 -0.02 0.89 16 43 H 0.10 1.44 7.93 -2.39 -0.02 1.43 16 44 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 1.49 6.55 -2.39 -0.02 1.47 16 46 H 0.42 6.01 8.15 -92.71 -0.76 5.25 16 47 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 48 H 0.23 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: -1.00 -87.05 399.90 -1.20 -88.25 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.59 Total: 14.47 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 9.20 Total: 32.78 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -11.73 Total: -135.72 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.11 Total: -47.30 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -87.05 -1.20 -88.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377146869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.938 kcal (2) G-P(sol) polarization free energy of solvation -87.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds