Wall clock time and date at job start Tue Mar 31 2020 20:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46999 * 2 1 4 4 C 1.46506 * 119.99735 * 269.99953 * 3 2 1 5 5 C 1.50693 * 109.47210 * 269.99808 * 4 3 2 6 6 H 1.08000 * 119.99863 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99966 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47188 * 89.99928 * 9 7 5 11 11 H 1.48499 * 109.47270 * 210.00276 * 9 7 5 12 12 H 1.48503 * 109.47291 * 329.99930 * 9 7 5 13 13 C 1.34773 * 120.00060 * 89.99612 * 3 2 1 14 14 O 1.21288 * 119.99861 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00013 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.47214 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99636 * 293.94782 * 16 15 13 18 18 C 1.46893 * 110.99990 * 169.99899 * 16 15 13 19 19 C 1.53005 * 109.47120 * 189.99926 * 18 16 15 20 20 N 1.46499 * 109.47447 * 179.97438 * 19 18 16 21 21 C 1.34773 * 120.00115 * 179.97438 * 20 19 18 22 22 O 1.21606 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.47425 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.41288 * 126.41671 * 0.04693 * 23 21 20 25 25 N 1.30449 * 108.02633 * 179.70252 * 24 23 21 26 26 N 1.39939 * 108.89553 * 0.40857 * 25 24 23 27 27 H 0.97001 * 125.75870 * 179.85304 * 26 25 24 28 28 C 1.34266 * 108.48792 * 359.57838 * 26 25 24 29 29 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46915 * 300.00165 * 1 2 3 31 31 H 1.08997 * 109.47345 * 60.00153 * 1 2 3 32 32 H 1.09002 * 109.47050 * 240.00508 * 2 1 3 33 33 H 1.08997 * 109.47345 * 119.99847 * 2 1 3 34 34 H 1.08995 * 109.47097 * 30.00300 * 4 3 2 35 35 H 1.09007 * 109.46728 * 149.99904 * 4 3 2 36 36 H 0.97000 * 120.00016 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47437 * 59.99333 * 15 13 3 38 38 H 1.08997 * 109.46783 * 299.99250 * 15 13 3 39 39 H 1.08995 * 109.47429 * 296.04683 * 17 16 15 40 40 H 1.09003 * 109.46786 * 56.04671 * 17 16 15 41 41 H 1.08999 * 109.46720 * 176.04318 * 17 16 15 42 42 H 1.09001 * 109.47951 * 69.99621 * 18 16 15 43 43 H 1.09007 * 109.47058 * 309.99304 * 18 16 15 44 44 H 1.09003 * 109.47033 * 60.00041 * 19 18 16 45 45 H 1.08998 * 109.46795 * 299.99906 * 19 18 16 46 46 H 0.97000 * 119.99689 * 0.02562 * 20 19 18 47 47 H 1.08001 * 125.98863 * 359.97438 * 24 23 21 48 48 H 1.08001 * 126.29046 * 180.22045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6172 9 14 5.9133 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3929 3.2641 -4.1994 12 1 6.7736 1.9157 -2.2202 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 3.7476 2.5096 3.6267 18 6 1.8586 1.6399 4.8667 19 6 1.9779 2.6991 5.9644 20 7 1.5264 2.1348 7.2387 21 6 1.5429 2.8910 8.3541 22 8 1.9322 4.0419 8.3027 23 6 1.0890 2.3229 9.6366 24 6 0.6134 1.0098 9.8508 25 7 0.3170 0.8892 11.1154 26 7 0.5759 2.1042 11.7595 27 1 0.4400 2.2861 12.7026 28 6 1.0500 2.9740 10.8532 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1385 36 1 3.6756 3.5178 -4.4431 37 1 2.6227 0.4188 2.5298 38 1 0.9444 1.0116 2.5301 39 1 4.3073 1.5948 3.8213 40 1 4.0560 2.9273 2.6683 41 1 3.9455 3.2321 4.4185 42 1 2.4776 0.7800 5.1226 43 1 0.8188 1.3252 4.7770 44 1 1.3588 3.5589 5.7085 45 1 3.0176 3.0138 6.0541 46 1 1.2162 1.2166 7.2797 47 1 0.5168 0.2395 9.1001 48 1 1.3458 3.9955 11.0413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001399436171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:33 Heat of formation + Delta-G solvation = 16.130245 kcal Electronic energy + Delta-G solvation = -28438.929100 eV Core-core repulsion = 24338.156098 eV Total energy + Delta-G solvation = -4100.773002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79853 -39.57265 -39.18377 -37.14016 -35.25610 -34.62094 -32.79191 -32.34388 -30.98261 -30.10397 -29.51324 -28.19224 -26.69845 -25.05746 -23.22734 -22.96390 -22.47683 -22.16432 -21.21763 -20.30476 -19.02209 -18.27568 -16.71206 -16.52528 -16.41133 -16.16852 -15.96301 -15.49657 -15.42520 -15.09714 -14.96380 -14.55255 -14.27940 -14.21768 -13.64625 -13.49409 -13.37661 -13.34598 -13.22045 -12.68805 -12.40017 -12.05119 -11.94814 -11.73658 -11.66516 -11.49611 -11.26726 -11.24293 -11.09488 -10.88871 -10.69842 -10.50851 -10.39228 -10.15653 -10.09569 -9.60915 -9.43269 -9.12469 -8.88025 -8.41899 -8.18466 -7.61611 -6.02480 -4.07204 1.08513 1.69960 2.17708 2.90224 3.17988 3.30507 3.37448 3.40457 3.48245 3.74877 4.13203 4.27632 4.34845 4.46571 4.64254 4.74373 4.84574 4.91155 5.07957 5.20828 5.25191 5.27000 5.31849 5.38703 5.49478 5.62575 5.68521 5.71169 5.76177 5.80752 5.82366 5.91065 6.02786 6.20835 6.23647 6.42490 6.48577 6.54814 6.90636 6.93756 7.08895 7.16182 7.29971 7.49056 7.59116 7.94376 8.04966 8.25985 8.47168 8.93013 9.16627 9.57975 11.05435 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.001829 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.119620 B =15301.393122 C =15977.930291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.015 3.985 18 C 0.045 3.955 19 C 0.123 3.877 20 N -0.725 5.725 21 C 0.594 3.406 22 O -0.546 6.546 23 C -0.293 4.293 24 C 0.084 3.916 25 N -0.296 5.296 26 N -0.464 5.464 27 H 0.445 0.555 28 C 0.135 3.865 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.019 0.981 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.397 0.603 47 H 0.191 0.809 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -8.378 27.148 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.133 4.133 18 C -0.084 4.084 19 C 0.000 4.000 20 N -0.377 5.377 21 C 0.381 3.619 22 O -0.424 6.424 23 C -0.308 4.308 24 C -0.104 4.104 25 N -0.117 5.117 26 N -0.169 5.169 27 H 0.290 0.710 28 C -0.018 4.018 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.037 0.963 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.231 0.769 47 H 0.208 0.792 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.778 -7.165 27.702 29.652 hybrid contribution 1.435 -0.889 -0.455 1.748 sum -6.343 -8.054 27.247 29.112 Atomic orbital electron populations 1.22226 0.96820 1.01312 1.02407 1.21401 0.93497 0.84371 1.02503 1.48260 1.64151 1.13143 1.07696 1.19247 0.96122 0.93705 0.78084 1.21428 0.96980 1.31797 1.06231 0.92579 1.24932 0.97774 0.94951 0.96458 1.69930 1.35666 1.33377 1.14315 0.86515 0.84787 0.77641 0.78566 1.20715 1.21100 1.19954 1.20079 0.78955 0.87103 0.84682 1.90649 1.44735 1.17699 1.86731 1.22089 1.02237 0.94161 0.90819 1.61485 1.18185 1.43710 1.00922 1.22669 0.85855 0.99556 1.05223 1.22251 1.01134 0.95363 0.89612 1.21322 1.01088 0.96790 0.80837 1.45659 1.67473 1.16150 1.08408 1.17165 0.77272 0.85046 0.82398 1.90811 1.48029 1.17430 1.86129 1.20329 1.19403 0.96101 0.94979 1.24116 0.96052 0.96221 0.94033 1.77182 1.24075 1.02563 1.07838 1.46262 1.50237 1.08977 1.11446 0.70977 1.23103 0.93409 0.96738 0.88567 0.92266 0.93047 0.91990 0.90005 0.92009 0.95112 0.93840 0.92746 0.92481 0.88555 0.96259 0.88451 0.91336 0.94325 0.90191 0.90103 0.91004 0.76873 0.79225 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.77 9.39 -34.45 -0.32 -15.09 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 10.25 7.37 -10.99 -0.08 10.17 16 14 O -0.52 -12.93 13.91 5.55 0.08 -12.85 16 15 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 16 N -0.52 -7.30 4.50 -244.37 -1.10 -8.40 16 17 C 0.01 0.21 8.96 60.07 0.54 0.75 16 18 C 0.05 0.44 5.07 -3.83 -0.02 0.42 16 19 C 0.12 1.29 5.60 -4.04 -0.02 1.27 16 20 N -0.73 -6.06 5.55 -61.38 -0.34 -6.40 16 21 C 0.59 6.21 7.81 -12.52 -0.10 6.12 16 22 O -0.55 -7.90 16.90 5.27 0.09 -7.81 16 23 C -0.29 -2.33 6.13 -105.07 -0.64 -2.98 16 24 C 0.08 0.55 11.50 -16.98 -0.20 0.35 16 25 N -0.30 -2.21 12.63 30.86 0.39 -1.83 16 26 N -0.46 -2.36 7.29 30.85 0.22 -2.13 16 27 H 0.45 0.73 8.96 -182.72 -1.64 -0.91 16 28 C 0.13 0.82 11.82 -16.56 -0.20 0.62 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 38 H 0.10 1.15 6.98 -51.93 -0.36 0.79 16 39 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 41 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 42 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 43 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 46 H 0.40 2.03 7.43 -40.82 -0.30 1.73 16 47 H 0.19 0.60 7.50 -52.49 -0.39 0.21 16 48 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -38.11 398.94 -8.67 -46.78 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.48 Total: -1.62 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.83 Total: 10.01 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.52 Total: -57.32 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.11 -8.67 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001399436171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.915 kcal (2) G-P(sol) polarization free energy of solvation -38.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds