Wall clock time and date at job start Tue Mar 31 2020 20:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46999 * 2 1 4 4 C 1.46506 * 119.99735 * 269.99953 * 3 2 1 5 5 C 1.50693 * 109.47210 * 269.99808 * 4 3 2 6 6 H 1.08000 * 119.99863 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99966 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47188 * 89.99928 * 9 7 5 11 11 H 1.48499 * 109.47270 * 210.00276 * 9 7 5 12 12 H 1.48503 * 109.47291 * 329.99930 * 9 7 5 13 13 C 1.34773 * 120.00060 * 89.99612 * 3 2 1 14 14 O 1.21288 * 119.99861 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00013 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.47214 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99636 * 293.94782 * 16 15 13 18 18 C 1.46893 * 110.99990 * 169.99899 * 16 15 13 19 19 C 1.53005 * 109.47120 * 189.99926 * 18 16 15 20 20 N 1.46499 * 109.47447 * 179.97438 * 19 18 16 21 21 C 1.34773 * 120.00115 * 179.97438 * 20 19 18 22 22 O 1.21606 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.47425 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.41288 * 126.41671 * 0.04693 * 23 21 20 25 25 N 1.30449 * 108.02633 * 179.70252 * 24 23 21 26 26 N 1.39939 * 108.89553 * 0.40857 * 25 24 23 27 27 H 0.97001 * 125.75870 * 179.85304 * 26 25 24 28 28 C 1.34266 * 108.48792 * 359.57838 * 26 25 24 29 29 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46915 * 300.00165 * 1 2 3 31 31 H 1.08997 * 109.47345 * 60.00153 * 1 2 3 32 32 H 1.09002 * 109.47050 * 240.00508 * 2 1 3 33 33 H 1.08997 * 109.47345 * 119.99847 * 2 1 3 34 34 H 1.08995 * 109.47097 * 30.00300 * 4 3 2 35 35 H 1.09007 * 109.46728 * 149.99904 * 4 3 2 36 36 H 0.97000 * 120.00016 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47437 * 59.99333 * 15 13 3 38 38 H 1.08997 * 109.46783 * 299.99250 * 15 13 3 39 39 H 1.08995 * 109.47429 * 296.04683 * 17 16 15 40 40 H 1.09003 * 109.46786 * 56.04671 * 17 16 15 41 41 H 1.08999 * 109.46720 * 176.04318 * 17 16 15 42 42 H 1.09001 * 109.47951 * 69.99621 * 18 16 15 43 43 H 1.09007 * 109.47058 * 309.99304 * 18 16 15 44 44 H 1.09003 * 109.47033 * 60.00041 * 19 18 16 45 45 H 1.08998 * 109.46795 * 299.99906 * 19 18 16 46 46 H 0.97000 * 119.99689 * 0.02562 * 20 19 18 47 47 H 1.08001 * 125.98863 * 359.97438 * 24 23 21 48 48 H 1.08001 * 126.29046 * 180.22045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6172 9 14 5.9133 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3929 3.2641 -4.1994 12 1 6.7736 1.9157 -2.2202 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 3.7476 2.5096 3.6267 18 6 1.8586 1.6399 4.8667 19 6 1.9779 2.6991 5.9644 20 7 1.5264 2.1348 7.2387 21 6 1.5429 2.8910 8.3541 22 8 1.9322 4.0419 8.3027 23 6 1.0890 2.3229 9.6366 24 6 0.6134 1.0098 9.8508 25 7 0.3170 0.8892 11.1154 26 7 0.5759 2.1042 11.7595 27 1 0.4400 2.2861 12.7026 28 6 1.0500 2.9740 10.8532 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1385 36 1 3.6756 3.5178 -4.4431 37 1 2.6227 0.4188 2.5298 38 1 0.9444 1.0116 2.5301 39 1 4.3073 1.5948 3.8213 40 1 4.0560 2.9273 2.6683 41 1 3.9455 3.2321 4.4185 42 1 2.4776 0.7800 5.1226 43 1 0.8188 1.3252 4.7770 44 1 1.3588 3.5589 5.7085 45 1 3.0176 3.0138 6.0541 46 1 1.2162 1.2166 7.2797 47 1 0.5168 0.2395 9.1001 48 1 1.3458 3.9955 11.0413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001399436171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:32 Heat of formation + Delta-G solvation = -15.070004 kcal Electronic energy + Delta-G solvation = -28440.282044 eV Core-core repulsion = 24338.156098 eV Total energy + Delta-G solvation = -4102.125946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29318 -40.86712 -40.16967 -38.26840 -36.80641 -35.57352 -34.86990 -32.85219 -31.70935 -31.49871 -30.51147 -29.42014 -28.32308 -26.21938 -24.73692 -24.07763 -23.35659 -22.93796 -22.15921 -20.95507 -19.80134 -19.58551 -18.59426 -17.93447 -17.46869 -17.02801 -16.94109 -16.83685 -16.42949 -16.20124 -15.86878 -15.51860 -15.44109 -15.25849 -14.95048 -14.59256 -14.51582 -14.32927 -14.14814 -13.92101 -13.78817 -13.49562 -13.25639 -13.08609 -12.91045 -12.64692 -12.61295 -12.52970 -12.43699 -12.21365 -12.11783 -12.06022 -11.78154 -11.67453 -10.97806 -10.84471 -10.62469 -10.45165 -10.17624 -9.73315 -9.35889 -9.23956 -8.20063 -6.34962 0.56317 1.18121 1.36336 1.39716 1.49624 1.76617 1.94287 2.11395 2.36381 2.48657 2.51332 3.08968 3.16566 3.69016 3.77307 3.89741 3.93529 4.12070 4.14218 4.16233 4.29847 4.40189 4.41991 4.49394 4.51300 4.59252 4.63886 4.71988 4.75177 4.93514 4.98771 5.02827 5.05177 5.10594 5.22672 5.26891 5.35914 5.45171 5.46630 5.61832 5.87546 5.95419 6.10169 6.13310 6.22507 6.47751 6.67818 6.74031 6.90530 7.31828 7.33727 7.61541 8.86550 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.001829 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.119620 B =15301.393122 C =15977.930291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.581 6.581 15 C 0.055 3.945 16 N -0.544 5.544 17 C 0.022 3.978 18 C 0.054 3.946 19 C 0.130 3.870 20 N -0.709 5.709 21 C 0.592 3.408 22 O -0.596 6.596 23 C -0.319 4.319 24 C 0.092 3.908 25 N -0.323 5.323 26 N -0.452 5.452 27 H 0.459 0.541 28 C 0.143 3.857 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.019 0.981 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.416 0.584 47 H 0.221 0.779 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -11.737 29.270 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.282 3.718 14 O -0.461 6.461 15 C -0.076 4.076 16 N -0.269 5.269 17 C -0.126 4.126 18 C -0.073 4.073 19 C 0.005 3.995 20 N -0.361 5.361 21 C 0.381 3.619 22 O -0.478 6.478 23 C -0.334 4.334 24 C -0.096 4.096 25 N -0.144 5.144 26 N -0.158 5.158 27 H 0.307 0.693 28 C -0.012 4.012 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.037 0.963 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.254 0.746 47 H 0.237 0.763 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.161 -10.630 29.872 32.740 hybrid contribution 1.487 0.191 -1.048 1.829 sum -6.674 -10.439 28.823 31.374 Atomic orbital electron populations 1.22159 0.94595 1.03464 1.01695 1.21750 0.95296 0.81315 1.03889 1.48291 1.64328 1.15110 1.06103 1.18640 0.95104 0.91426 0.80612 1.21714 0.97942 1.31755 1.06408 0.92837 1.25869 1.02330 0.94556 0.96564 1.70059 1.37773 1.34255 1.14787 0.85424 0.79102 0.78129 0.78193 1.18763 1.20850 1.19763 1.21275 0.77405 0.86733 0.86425 1.90628 1.47147 1.20572 1.87740 1.22005 1.04769 0.93719 0.87096 1.61344 1.17598 1.45163 1.02807 1.22466 0.87030 1.00381 1.02683 1.22256 1.02991 0.95268 0.86807 1.21095 0.99597 0.96672 0.82120 1.45441 1.66660 1.16853 1.07164 1.17547 0.76429 0.84473 0.83460 1.90784 1.50490 1.19634 1.86918 1.20253 1.21474 0.97277 0.94375 1.24564 0.94624 0.96119 0.94265 1.77152 1.25146 1.03684 1.08423 1.46287 1.49229 1.08201 1.12095 0.69287 1.23425 0.92056 0.97373 0.88312 0.88569 0.91820 0.94696 0.91288 0.87915 0.96255 0.98875 0.92519 0.89678 0.85085 0.94272 0.93122 0.90913 0.91612 0.87572 0.92689 0.92696 0.74610 0.76310 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 10.24 71.98 0.74 -2.94 16 2 C 0.10 2.84 5.93 86.38 0.51 3.36 16 3 N -0.61 -25.14 2.46 -826.14 -2.03 -27.17 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.32 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.49 20.08 7.37 87.66 0.65 20.73 16 14 O -0.58 -30.32 13.91 -3.05 -0.04 -30.37 16 15 C 0.05 1.40 4.00 85.55 0.34 1.74 16 16 N -0.54 -14.34 4.50 -927.05 -4.17 -18.51 16 17 C 0.02 0.65 8.96 127.69 1.14 1.80 16 18 C 0.05 0.87 5.07 86.31 0.44 1.30 16 19 C 0.13 2.55 5.60 86.38 0.48 3.03 16 20 N -0.71 -10.42 5.55 -466.37 -2.59 -13.00 16 21 C 0.59 11.87 7.81 86.66 0.68 12.54 16 22 O -0.60 -17.55 16.90 -4.05 -0.07 -17.62 16 23 C -0.32 -4.55 6.13 -20.15 -0.12 -4.68 16 24 C 0.09 0.97 11.50 85.65 0.99 1.95 16 25 N -0.32 -4.12 12.63 -56.27 -0.71 -4.84 16 26 N -0.45 -3.73 7.29 -56.31 -0.41 -4.14 16 27 H 0.46 0.64 8.96 -213.42 -1.91 -1.28 16 28 C 0.14 1.52 11.82 84.27 1.00 2.51 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 34 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 35 H -0.01 -0.44 7.42 -2.38 -0.02 -0.46 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.09 1.77 7.38 -2.39 -0.02 1.75 16 38 H 0.13 2.48 6.98 -2.39 -0.02 2.47 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.98 5.82 -2.39 -0.01 1.96 16 41 H 0.07 2.00 6.47 -2.39 -0.02 1.98 16 42 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 43 H 0.11 1.19 7.93 -2.38 -0.02 1.18 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.28 6.55 -2.39 -0.02 1.26 16 46 H 0.42 2.79 7.43 -92.71 -0.69 2.10 16 47 H 0.22 0.58 7.50 -2.91 -0.02 0.55 16 48 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -90.31 398.94 -1.33 -91.64 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -1.60 Total: 7.43 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.98 Total: 25.90 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -9.62 Total: -124.34 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.11 Total: -47.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -90.31 -1.33 -91.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001399436171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -90.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds