Wall clock time and date at job start Tue Mar 31 2020 20:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47385 * 2 1 4 4 C 1.46495 * 120.00493 * 269.99812 * 3 2 1 5 5 C 1.50701 * 109.47297 * 270.00368 * 4 3 2 6 6 H 1.07997 * 119.99826 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99791 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00213 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46695 * 90.00050 * 9 7 5 11 11 H 1.48495 * 109.46767 * 209.99959 * 9 7 5 12 12 H 1.48501 * 109.47250 * 330.00282 * 9 7 5 13 13 C 1.34785 * 119.99901 * 89.99772 * 3 2 1 14 14 O 1.21281 * 119.99923 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99759 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.46895 * 110.99864 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46918 * 180.02562 * 17 16 15 19 19 H 1.09001 * 109.47502 * 65.00351 * 18 17 16 20 20 C 1.53006 * 109.47127 * 185.00194 * 18 17 16 21 21 N 1.46500 * 109.47007 * 304.99975 * 18 17 16 22 22 C 1.34773 * 119.99910 * 155.00372 * 21 18 17 23 23 O 1.21600 * 120.00400 * 359.97438 * 22 21 18 24 24 C 1.47415 * 120.00067 * 179.97438 * 22 21 18 25 25 N 1.31619 * 125.86175 * 0.02800 * 24 22 21 26 26 C 1.33098 * 109.09399 * 179.97438 * 25 24 22 27 27 C 1.35560 * 108.35149 * 359.97438 * 26 25 24 28 28 N 1.35406 * 107.16189 * 359.77593 * 27 26 25 29 29 H 0.97000 * 126.44506 * 180.21709 * 28 27 26 30 30 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47111 * 300.00054 * 1 2 3 32 32 H 1.09004 * 109.46651 * 60.00212 * 1 2 3 33 33 H 1.09000 * 109.47111 * 239.99946 * 2 1 3 34 34 H 1.09005 * 109.46764 * 120.00329 * 2 1 3 35 35 H 1.09009 * 109.46781 * 30.00064 * 4 3 2 36 36 H 1.08997 * 109.47916 * 149.99582 * 4 3 2 37 37 H 0.96994 * 119.99998 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47499 * 59.99905 * 15 13 3 39 39 H 1.08996 * 109.47189 * 299.99676 * 15 13 3 40 40 H 1.00902 * 110.99738 * 303.95301 * 16 15 13 41 41 H 1.08998 * 109.47351 * 60.00015 * 17 16 15 42 42 H 1.08998 * 109.47282 * 299.99859 * 17 16 15 43 43 H 1.09001 * 109.47002 * 299.99574 * 20 18 17 44 44 H 1.08993 * 109.46955 * 60.00011 * 20 18 17 45 45 H 1.09000 * 109.47050 * 179.97438 * 20 18 17 46 46 H 0.96995 * 120.00293 * 334.99551 * 21 18 17 47 47 H 1.08002 * 125.82298 * 180.02562 * 26 25 24 48 48 H 1.08004 * 126.42365 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3915 2.1833 -3.2573 9 14 3.0126 3.4341 -3.9298 10 1 3.1151 4.8546 -3.5089 11 1 3.4061 3.3108 -5.3563 12 1 1.6131 2.9674 -3.7602 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0774 1.5455 4.8802 18 6 2.4189 2.5118 6.0162 19 1 1.7294 3.3558 5.9950 20 6 2.2956 1.7861 7.3575 21 7 3.7907 2.9976 5.8481 22 6 4.1553 4.1828 6.3762 23 8 3.3455 4.8492 6.9917 24 6 5.5358 4.6715 6.2076 25 7 6.5014 4.0483 5.5660 26 6 7.6071 4.7873 5.6190 27 6 7.3327 5.9165 6.3170 28 7 6.0312 5.8523 6.6851 29 1 5.5428 6.5181 7.1942 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 5.7173 2.5732 -4.0835 38 1 2.6227 0.4186 2.5299 39 1 0.9444 1.0114 2.5302 40 1 3.2593 2.5438 3.5216 41 1 2.7078 0.6594 4.9545 42 1 1.0299 1.2534 4.9548 43 1 1.2749 1.4246 7.4826 44 1 2.9851 0.9422 7.3787 45 1 2.5393 2.4744 8.1668 46 1 4.4367 2.4663 5.3570 47 1 8.5601 4.5313 5.1800 48 1 8.0219 6.7188 6.5356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401624969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:16 Heat of formation + Delta-G solvation = -4.611555 kcal Electronic energy + Delta-G solvation = -29173.261990 eV Core-core repulsion = 25071.589556 eV Total energy + Delta-G solvation = -4101.672434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41693 -39.80844 -39.15350 -36.98175 -35.37327 -34.30989 -32.97595 -32.65974 -31.58111 -30.33135 -29.59828 -28.57131 -26.85930 -24.54212 -23.85358 -22.95851 -21.84789 -21.78597 -21.36307 -20.53164 -19.23254 -18.32642 -16.93933 -16.91088 -16.65406 -16.19885 -15.91660 -15.75055 -15.50620 -14.73168 -14.48380 -14.45434 -14.16445 -14.07636 -13.82426 -13.67053 -13.51656 -13.43638 -13.10791 -12.68674 -12.51559 -12.35953 -12.18089 -12.00214 -11.90881 -11.63898 -11.35994 -11.17586 -10.93927 -10.70473 -10.54254 -10.50206 -10.47825 -10.46741 -10.13059 -9.51728 -9.39919 -8.99064 -8.81416 -8.56297 -8.38126 -7.68209 -6.06408 -4.04794 1.14579 2.33058 2.40792 3.23874 3.28492 3.31213 3.37085 3.39160 3.39751 3.63211 4.07784 4.25143 4.42108 4.63457 4.72663 4.92192 5.00546 5.04503 5.07234 5.13817 5.21976 5.27682 5.31355 5.38850 5.44717 5.45866 5.50968 5.59323 5.66494 5.75646 5.80120 5.93875 5.98319 6.16116 6.22413 6.33599 6.40785 6.68266 6.85116 6.87136 7.01423 7.15671 7.34277 7.39807 7.59304 7.64285 7.92936 8.29869 8.49796 8.95773 9.04419 9.54306 11.07015 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002958 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.668578 B = 9465.139177 C =11591.763793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.042 3.958 16 N -0.673 5.673 17 C 0.051 3.949 18 C 0.145 3.855 19 H 0.101 0.899 20 C -0.162 4.162 21 N -0.698 5.698 22 C 0.614 3.386 23 O -0.543 6.543 24 C 0.142 3.858 25 N -0.439 5.439 26 C -0.024 4.024 27 C -0.025 4.025 28 N -0.525 5.525 29 H 0.429 0.571 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.354 0.646 41 H 0.038 0.962 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.411 0.589 47 H 0.180 0.820 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -1.514 22.029 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.090 4.090 16 N -0.307 5.307 17 C -0.079 4.079 18 C 0.041 3.959 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.349 5.349 22 C 0.398 3.602 23 O -0.419 6.419 24 C -0.119 4.119 25 N -0.162 5.162 26 C -0.178 4.178 27 C -0.164 4.164 28 N -0.127 5.127 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.174 0.826 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.247 0.753 47 H 0.197 0.803 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.305 -0.875 21.888 22.324 hybrid contribution 0.686 0.747 -0.384 1.085 sum -3.619 -0.128 21.503 21.806 Atomic orbital electron populations 1.22239 0.96787 1.01508 1.02303 1.21431 0.93389 0.83938 1.03012 1.47925 1.64508 1.13325 1.06975 1.19624 0.97214 0.93402 0.80092 1.21334 0.95366 1.32841 1.07059 0.90823 1.24856 0.94984 0.95791 0.97374 1.69898 1.15122 1.45078 1.23552 0.86853 0.81486 0.81659 0.79708 1.19921 1.21110 1.19080 1.20197 0.78670 0.87081 0.84880 1.90689 1.44758 1.17814 1.86889 1.21894 1.02439 0.94375 0.90325 1.60080 1.33172 1.37527 0.99920 1.22304 1.02322 0.94705 0.88535 1.21135 0.82743 0.97887 0.94167 0.88088 1.22164 1.02510 1.00682 0.96760 1.45654 1.13522 1.20222 1.55511 1.16377 0.83507 0.81349 0.78949 1.90828 1.51667 1.57055 1.42365 1.22656 0.96501 0.87679 1.05055 1.70223 0.99358 1.30240 1.16341 1.22552 0.98441 0.92732 1.04034 1.23015 0.85760 1.03070 1.04538 1.42930 1.10464 1.17953 1.41377 0.73132 0.92033 0.92918 0.92225 0.89763 0.91552 0.95341 0.94639 0.92605 0.92615 0.88579 0.82581 0.94417 0.89123 0.91098 0.92222 0.91795 0.75316 0.80268 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.62 5.93 -4.05 -0.02 1.59 16 3 N -0.59 -12.13 2.46 -175.06 -0.43 -12.56 16 4 C 0.22 5.36 4.23 -5.20 -0.02 5.34 16 5 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.31 7.71 -10.98 -0.08 10.22 16 14 O -0.53 -13.22 15.78 5.56 0.09 -13.13 16 15 C 0.04 0.60 4.72 -4.97 -0.02 0.58 16 16 N -0.67 -9.40 6.12 -115.06 -0.70 -10.10 16 17 C 0.05 0.50 5.30 -3.83 -0.02 0.48 16 18 C 0.14 1.47 2.88 -67.93 -0.20 1.28 16 19 H 0.10 1.23 7.58 -51.93 -0.39 0.83 16 20 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 21 N -0.70 -7.98 4.35 -54.88 -0.24 -8.22 16 22 C 0.61 8.13 7.78 -12.53 -0.10 8.03 16 23 O -0.54 -8.17 16.76 5.28 0.09 -8.08 16 24 C 0.14 1.79 7.95 -154.52 -1.23 0.56 16 25 N -0.44 -5.77 10.89 -11.26 -0.12 -5.90 16 26 C -0.02 -0.25 11.85 -17.96 -0.21 -0.47 16 27 C -0.02 -0.20 12.00 -16.93 -0.20 -0.40 16 28 N -0.53 -5.01 6.14 -10.78 -0.07 -5.08 16 29 H 0.43 3.14 8.96 -40.82 -0.37 2.77 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 35 H 0.03 0.67 7.13 -51.92 -0.37 0.30 16 36 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.06 0.71 7.40 -51.93 -0.38 0.32 16 39 H 0.10 1.16 7.19 -51.93 -0.37 0.78 16 40 H 0.35 5.52 7.28 -39.29 -0.29 5.23 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.41 4.54 7.83 -40.82 -0.32 4.22 16 47 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 48 H 0.19 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -38.23 401.60 -8.42 -46.65 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.37 Total: 9.30 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.82 Total: 10.96 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -0.79 Total: -68.96 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.23 -8.42 -46.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401624969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.043 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds