Wall clock time and date at job start Tue Mar 31 2020 20:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47385 * 2 1 4 4 C 1.46495 * 120.00493 * 269.99812 * 3 2 1 5 5 C 1.50701 * 109.47297 * 270.00368 * 4 3 2 6 6 H 1.07997 * 119.99826 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99791 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00213 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46695 * 90.00050 * 9 7 5 11 11 H 1.48495 * 109.46767 * 209.99959 * 9 7 5 12 12 H 1.48501 * 109.47250 * 330.00282 * 9 7 5 13 13 C 1.34785 * 119.99901 * 89.99772 * 3 2 1 14 14 O 1.21281 * 119.99923 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99759 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.46895 * 110.99864 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46918 * 180.02562 * 17 16 15 19 19 H 1.09001 * 109.47502 * 65.00351 * 18 17 16 20 20 C 1.53006 * 109.47127 * 185.00194 * 18 17 16 21 21 N 1.46500 * 109.47007 * 304.99975 * 18 17 16 22 22 C 1.34773 * 119.99910 * 155.00372 * 21 18 17 23 23 O 1.21600 * 120.00400 * 359.97438 * 22 21 18 24 24 C 1.47415 * 120.00067 * 179.97438 * 22 21 18 25 25 N 1.31619 * 125.86175 * 0.02800 * 24 22 21 26 26 C 1.33098 * 109.09399 * 179.97438 * 25 24 22 27 27 C 1.35560 * 108.35149 * 359.97438 * 26 25 24 28 28 N 1.35406 * 107.16189 * 359.77593 * 27 26 25 29 29 H 0.97000 * 126.44506 * 180.21709 * 28 27 26 30 30 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47111 * 300.00054 * 1 2 3 32 32 H 1.09004 * 109.46651 * 60.00212 * 1 2 3 33 33 H 1.09000 * 109.47111 * 239.99946 * 2 1 3 34 34 H 1.09005 * 109.46764 * 120.00329 * 2 1 3 35 35 H 1.09009 * 109.46781 * 30.00064 * 4 3 2 36 36 H 1.08997 * 109.47916 * 149.99582 * 4 3 2 37 37 H 0.96994 * 119.99998 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47499 * 59.99905 * 15 13 3 39 39 H 1.08996 * 109.47189 * 299.99676 * 15 13 3 40 40 H 1.00902 * 110.99738 * 303.95301 * 16 15 13 41 41 H 1.08998 * 109.47351 * 60.00015 * 17 16 15 42 42 H 1.08998 * 109.47282 * 299.99859 * 17 16 15 43 43 H 1.09001 * 109.47002 * 299.99574 * 20 18 17 44 44 H 1.08993 * 109.46955 * 60.00011 * 20 18 17 45 45 H 1.09000 * 109.47050 * 179.97438 * 20 18 17 46 46 H 0.96995 * 120.00293 * 334.99551 * 21 18 17 47 47 H 1.08002 * 125.82298 * 180.02562 * 26 25 24 48 48 H 1.08004 * 126.42365 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3915 2.1833 -3.2573 9 14 3.0126 3.4341 -3.9298 10 1 3.1151 4.8546 -3.5089 11 1 3.4061 3.3108 -5.3563 12 1 1.6131 2.9674 -3.7602 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0774 1.5455 4.8802 18 6 2.4189 2.5118 6.0162 19 1 1.7294 3.3558 5.9950 20 6 2.2956 1.7861 7.3575 21 7 3.7907 2.9976 5.8481 22 6 4.1553 4.1828 6.3762 23 8 3.3455 4.8492 6.9917 24 6 5.5358 4.6715 6.2076 25 7 6.5014 4.0483 5.5660 26 6 7.6071 4.7873 5.6190 27 6 7.3327 5.9165 6.3170 28 7 6.0312 5.8523 6.6851 29 1 5.5428 6.5181 7.1942 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5818 1.6877 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 5.7173 2.5732 -4.0835 38 1 2.6227 0.4186 2.5299 39 1 0.9444 1.0114 2.5302 40 1 3.2593 2.5438 3.5216 41 1 2.7078 0.6594 4.9545 42 1 1.0299 1.2534 4.9548 43 1 1.2749 1.4246 7.4826 44 1 2.9851 0.9422 7.3787 45 1 2.5393 2.4744 8.1668 46 1 4.4367 2.4663 5.3570 47 1 8.5601 4.5313 5.1800 48 1 8.0219 6.7188 6.5356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401624969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:15 Heat of formation + Delta-G solvation = -35.966692 kcal Electronic energy + Delta-G solvation = -29174.621650 eV Core-core repulsion = 25071.589556 eV Total energy + Delta-G solvation = -4103.032094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.21948 -40.88806 -40.55980 -37.98077 -36.94730 -35.40995 -34.79346 -33.79187 -32.48416 -31.84355 -30.41496 -30.02860 -28.22072 -25.58750 -24.88673 -24.32815 -23.47466 -22.55763 -22.19172 -21.41764 -20.18033 -19.71336 -19.10103 -18.06071 -17.80530 -17.35328 -17.04543 -16.85525 -16.68823 -16.30098 -15.70044 -15.41461 -15.23078 -15.04721 -14.90102 -14.76630 -14.67216 -14.57085 -14.49755 -14.09086 -13.79262 -13.47416 -13.34480 -13.24849 -13.10742 -12.89416 -12.74221 -12.53078 -12.34651 -12.03953 -11.98177 -11.86915 -11.74045 -11.47918 -11.37863 -11.34923 -10.83477 -10.63092 -10.29354 -9.58362 -9.42144 -9.36345 -8.34392 -6.38800 0.29117 1.30906 1.35443 1.43472 1.52930 1.60990 1.84683 2.23797 2.30201 2.33040 2.51366 2.99953 3.12387 3.28659 3.71537 3.80873 4.03085 4.11822 4.18867 4.27008 4.33593 4.38697 4.40193 4.44961 4.48659 4.66132 4.68120 4.71876 4.76428 4.81311 4.91772 4.92341 5.03151 5.03515 5.04166 5.27366 5.38849 5.41740 5.47898 5.58322 5.67099 5.90236 6.12407 6.21077 6.25251 6.27234 6.62218 6.76172 6.76594 7.00298 7.22288 7.48155 8.82539 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002958 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.668578 B = 9465.139177 C =11591.763793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.239 1.239 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.058 3.942 16 N -0.694 5.694 17 C 0.057 3.943 18 C 0.144 3.856 19 H 0.077 0.923 20 C -0.153 4.153 21 N -0.693 5.693 22 C 0.608 3.392 23 O -0.572 6.572 24 C 0.106 3.894 25 N -0.466 5.466 26 C -0.057 4.057 27 C 0.006 3.994 28 N -0.519 5.519 29 H 0.439 0.561 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.339 0.661 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.411 0.589 47 H 0.198 0.802 48 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -2.489 22.952 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.162 1.162 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.074 4.074 16 N -0.327 5.327 17 C -0.072 4.072 18 C 0.040 3.960 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.343 5.343 22 C 0.393 3.607 23 O -0.451 6.451 24 C -0.154 4.154 25 N -0.189 5.189 26 C -0.210 4.210 27 C -0.134 4.134 28 N -0.122 5.122 29 H 0.280 0.720 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.248 0.752 47 H 0.215 0.785 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.097 -1.935 22.834 23.714 hybrid contribution 1.374 1.028 -0.624 1.826 sum -4.724 -0.907 22.210 22.725 Atomic orbital electron populations 1.22161 0.93974 1.03642 1.02065 1.21787 0.95615 0.80995 1.04013 1.48062 1.64383 1.15231 1.05670 1.19244 0.94750 0.92826 0.82791 1.21568 0.97069 1.32019 1.06623 0.95216 1.25826 0.96679 0.97148 0.98974 1.70045 1.17315 1.46610 1.24474 0.85748 0.80532 0.78952 0.77914 1.20494 1.19792 1.16234 1.21369 0.77090 0.86689 0.86700 1.90652 1.47415 1.20701 1.87916 1.21854 1.04800 0.93939 0.86811 1.60095 1.32343 1.38674 1.01555 1.22406 1.04178 0.94666 0.85930 1.21225 0.81528 0.97469 0.95807 0.90464 1.22085 1.04184 1.00285 0.94566 1.45719 1.14072 1.19744 1.54795 1.16594 0.83798 0.81584 0.78725 1.90790 1.52511 1.57881 1.43893 1.22556 0.96391 0.89261 1.07201 1.70138 1.00403 1.31541 1.16830 1.23086 0.98655 0.93743 1.05487 1.23762 0.85283 1.02895 1.01450 1.43026 1.11063 1.17294 1.40822 0.72005 0.88641 0.91818 0.93828 0.91125 0.88315 0.93531 0.96921 0.92289 0.90240 0.85208 0.84230 0.92247 0.86696 0.88888 0.91042 0.93474 0.75220 0.78543 0.74910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.65 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.31 2.46 -826.17 -2.03 -26.34 16 4 C 0.23 11.28 4.23 85.63 0.36 11.64 16 5 C -0.53 -31.95 9.94 25.60 0.25 -31.70 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 7 C 0.01 0.71 5.47 84.66 0.46 1.17 16 8 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 9 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 13 C 0.49 20.04 7.71 87.65 0.68 20.72 16 14 O -0.59 -30.59 15.78 -3.03 -0.05 -30.64 16 15 C 0.06 1.51 4.72 85.55 0.40 1.92 16 16 N -0.69 -18.67 6.12 -517.95 -3.17 -21.84 16 17 C 0.06 0.97 5.30 86.30 0.46 1.43 16 18 C 0.14 2.83 2.88 44.99 0.13 2.96 16 19 H 0.08 1.91 7.58 -2.39 -0.02 1.89 16 20 C -0.15 -2.23 9.48 71.98 0.68 -1.55 16 21 N -0.69 -16.32 4.35 -445.81 -1.94 -18.26 16 22 C 0.61 16.90 7.78 86.66 0.67 17.57 16 23 O -0.57 -18.06 16.76 -4.03 -0.07 -18.12 16 24 C 0.11 2.75 7.95 136.28 1.08 3.84 16 25 N -0.47 -12.63 10.89 -189.52 -2.06 -14.70 16 26 C -0.06 -1.16 11.85 83.88 0.99 -0.17 16 27 C 0.01 0.09 12.00 83.52 1.00 1.09 16 28 N -0.52 -9.72 6.14 -188.01 -1.16 -10.88 16 29 H 0.44 6.24 8.96 -92.71 -0.83 5.41 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.10 2.12 6.44 -2.38 -0.02 2.11 16 35 H 0.05 2.14 7.13 -2.38 -0.02 2.12 16 36 H 0.01 0.69 6.85 -2.39 -0.02 0.67 16 37 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.08 1.74 7.40 -2.39 -0.02 1.72 16 39 H 0.13 2.55 7.19 -2.39 -0.02 2.54 16 40 H 0.34 10.79 7.28 -89.69 -0.65 10.14 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.41 9.45 7.83 -92.71 -0.73 8.72 16 47 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 48 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -90.31 401.60 -1.12 -91.42 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -1.26 Total: 32.56 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 8.43 Total: 29.54 kcal Atomic # 7 Polarization: -142.08 SS G_CDS: -10.06 Total: -152.14 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.12 Total: -48.76 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -90.31 -1.12 -91.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401624969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.458 kcal (2) G-P(sol) polarization free energy of solvation -90.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds