Wall clock time and date at job start Tue Mar 31 2020 21:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99760 * 2 1 4 4 C 1.50707 * 109.47312 * 269.99790 * 3 2 1 5 5 H 1.07997 * 119.99962 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99993 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00020 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00000 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46904 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46762 * 120.00307 * 8 6 4 11 11 H 1.48494 * 109.47088 * 240.00558 * 8 6 4 12 12 C 1.34776 * 119.99963 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99744 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99869 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.46853 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46712 * 179.97438 * 15 14 12 17 17 C 1.46846 * 111.00196 * 66.04546 * 16 15 14 18 18 C 1.53037 * 109.52110 * 185.83847 * 17 16 15 19 19 C 1.53123 * 109.27767 * 300.81388 * 18 17 16 20 20 C 1.53120 * 109.15700 * 57.65918 * 19 18 17 21 21 H 1.08999 * 109.50398 * 62.32322 * 20 19 18 22 22 C 1.50697 * 109.50219 * 182.40187 * 20 19 18 23 23 N 1.30071 * 126.21218 * 59.97649 * 22 20 19 24 24 N 1.28652 * 109.54613 * 179.97438 * 23 22 20 25 25 C 1.31074 * 109.31800 * 359.97438 * 24 23 22 26 26 N 1.38256 * 126.37421 * 179.74194 * 25 24 23 27 27 O 1.34587 * 107.25512 * 0.02562 * 25 24 23 28 28 C 1.46850 * 110.99733 * 190.25150 * 16 15 14 29 29 H 1.09001 * 109.47534 * 269.99781 * 1 2 3 30 30 H 1.09000 * 109.47075 * 29.99787 * 1 2 3 31 31 H 1.08998 * 109.47435 * 149.99539 * 1 2 3 32 32 H 1.08992 * 109.47789 * 30.00437 * 3 2 1 33 33 H 1.09001 * 109.46793 * 150.00715 * 3 2 1 34 34 H 0.97001 * 119.99917 * 179.97438 * 7 6 4 35 35 H 1.08990 * 109.47391 * 60.00324 * 14 12 2 36 36 H 1.09001 * 109.46865 * 299.99726 * 14 12 2 37 37 H 1.08990 * 109.47389 * 59.99672 * 15 14 12 38 38 H 1.09001 * 109.46630 * 299.99219 * 15 14 12 39 39 H 1.08995 * 109.46836 * 65.81926 * 17 16 15 40 40 H 1.09001 * 109.45077 * 305.84482 * 17 16 15 41 41 H 1.09000 * 109.50057 * 180.87855 * 18 17 16 42 42 H 1.08998 * 109.50591 * 60.76077 * 18 17 16 43 43 H 1.08997 * 109.52402 * 297.75420 * 19 18 17 44 44 H 1.09005 * 109.57390 * 177.59041 * 19 18 17 45 45 H 0.97002 * 119.99360 * 0.02562 * 26 25 24 46 46 H 0.96993 * 120.00470 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.46226 * 54.14180 * 28 16 15 48 48 H 1.08997 * 109.46089 * 294.18005 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6182 -0.6731 8 14 3.4367 3.4177 -3.4339 9 1 2.8588 2.4176 -4.3673 10 1 2.7986 4.7382 -3.6668 11 1 4.8991 3.5264 -3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6450 -4.9074 0.0001 17 6 0.8994 -5.0852 -1.2524 18 6 0.0348 -6.3444 -1.1585 19 6 0.9338 -7.5570 -0.9015 20 6 1.7350 -7.3253 0.3827 21 1 1.0514 -7.2348 1.2268 22 6 2.6659 -8.4880 0.6116 23 7 3.6099 -8.8860 -0.1899 24 7 4.2066 -9.9052 0.3204 25 6 3.6591 -10.1947 1.4756 26 7 4.0234 -11.2271 2.3199 27 8 2.6721 -9.3037 1.6841 28 6 2.5503 -6.0376 0.2441 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5137 34 1 4.0300 4.4441 -0.8503 35 1 0.7584 -2.5299 -0.8902 36 1 0.7590 -2.5302 0.8897 37 1 3.0063 -3.5775 0.8893 38 1 3.0061 -3.5775 -0.8906 39 1 1.6002 -5.1868 -2.0810 40 1 0.2609 -4.2180 -1.4210 41 1 -0.5066 -6.4847 -2.0941 42 1 -0.6757 -6.2378 -0.3388 43 1 1.6185 -7.6870 -1.7395 44 1 0.3192 -8.4505 -0.7911 45 1 4.7503 -11.8206 2.0744 46 1 3.5522 -11.3579 3.1575 47 1 3.1110 -5.8622 1.1623 48 1 3.2434 -6.1347 -0.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413035112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:45 Heat of formation + Delta-G solvation = 10.955981 kcal Electronic energy + Delta-G solvation = -28909.253478 eV Core-core repulsion = 24808.256103 eV Total energy + Delta-G solvation = -4100.997374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.32213 -39.61961 -38.70478 -36.34563 -35.82428 -34.90975 -34.44462 -32.60736 -32.03738 -30.54159 -28.80586 -27.70691 -25.86438 -25.11472 -24.51601 -23.46324 -23.00762 -22.46688 -21.19127 -19.97056 -18.52228 -18.29358 -17.62399 -17.43367 -16.93651 -16.52895 -16.34934 -15.58615 -15.49199 -15.28204 -14.85242 -14.74320 -14.40879 -14.02900 -13.91599 -13.50875 -13.25262 -12.69644 -12.67497 -12.36906 -12.20955 -12.15963 -12.04867 -12.00695 -11.84345 -11.81124 -11.60042 -11.24701 -11.17215 -11.11748 -10.89978 -10.85695 -10.70804 -10.60650 -10.51394 -10.14353 -9.58960 -8.87115 -8.76655 -8.45459 -8.42444 -7.60869 -6.02901 -4.07510 1.08788 1.43881 2.27136 3.00294 3.30642 3.37912 3.41174 3.49218 3.64658 4.04672 4.15651 4.39815 4.46740 4.48269 4.65485 4.75216 4.84514 4.97947 5.03320 5.17864 5.22669 5.24450 5.29868 5.30682 5.37377 5.46807 5.53826 5.62866 5.66012 5.68052 5.78223 5.78784 5.93836 5.94533 6.03900 6.11371 6.16185 6.24235 6.29866 6.71049 6.91439 6.94575 7.08982 7.47019 7.57241 7.93831 8.22323 8.25400 8.45577 8.92451 9.13220 9.57648 11.05171 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.001956 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.807737 B =14307.842153 C =14597.657542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.073 3.927 16 N -0.538 5.538 17 C 0.044 3.956 18 C -0.113 4.113 19 C -0.112 4.112 20 C 0.021 3.979 21 H 0.107 0.893 22 C 0.150 3.850 23 N -0.255 5.255 24 N -0.346 5.346 25 C 0.418 3.582 26 N -0.796 5.796 27 O -0.247 6.247 28 C 0.066 3.934 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.435 0.565 46 H 0.418 0.582 47 H 0.080 0.920 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 -28.535 6.082 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.054 4.054 16 N -0.262 5.262 17 C -0.083 4.083 18 C -0.151 4.151 19 C -0.150 4.150 20 C 0.001 3.999 21 H 0.126 0.874 22 C -0.066 4.066 23 N -0.099 5.099 24 N -0.203 5.203 25 C 0.114 3.886 26 N -0.359 5.359 27 O -0.127 6.127 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.270 0.730 46 H 0.250 0.750 47 H 0.098 0.902 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.775 -28.298 5.422 29.843 hybrid contribution 0.064 0.031 -0.154 0.170 sum -7.712 -28.267 5.268 29.770 Atomic orbital electron populations 1.21626 0.81453 1.02500 1.00397 1.48155 1.06178 1.07878 1.71359 1.19284 0.92580 0.78196 0.97465 1.21474 1.36346 1.06172 0.92347 0.92453 1.24949 0.95416 0.96435 0.97429 1.69945 1.38481 1.14340 1.30639 0.86444 0.78090 0.78280 0.84613 1.19819 1.20981 1.20872 1.20307 0.88076 0.85182 0.77446 1.90670 1.14015 1.87366 1.50295 1.21644 0.99224 0.92588 1.04007 1.21792 0.94594 0.86265 1.02750 1.61867 1.27606 1.01796 1.34959 1.22250 0.97074 0.98618 0.90407 1.21577 0.97729 0.93162 1.02597 1.21672 0.98448 0.98932 0.95937 1.19667 0.93140 0.86056 1.01061 0.87439 1.27363 1.00610 0.96486 0.82109 1.74095 1.05300 1.05879 1.24596 1.74904 1.26017 1.13295 1.06104 1.23362 0.85670 0.88195 0.91360 1.40768 1.42266 1.30301 1.22598 1.84750 1.47369 1.36607 1.43931 1.21995 0.93544 0.88361 1.02348 0.93753 0.90905 0.92421 0.95049 0.93860 0.92792 0.89540 0.88818 0.89849 0.93488 0.94240 0.89840 0.90693 0.90641 0.90564 0.91340 0.72986 0.75036 0.90164 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.79 2.86 -182.96 -0.52 -13.31 16 3 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 4 C -0.52 -15.01 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.50 10.34 7.67 -10.98 -0.08 10.26 16 13 O -0.55 -13.69 15.56 5.56 0.09 -13.61 16 14 C -0.13 -1.91 4.19 -27.88 -0.12 -2.03 16 15 C 0.07 1.02 4.25 -3.82 -0.02 1.00 16 16 N -0.54 -5.89 4.66 -234.67 -1.09 -6.98 16 17 C 0.04 0.42 5.29 -3.83 -0.02 0.40 16 18 C -0.11 -0.83 6.09 -26.65 -0.16 -0.99 16 19 C -0.11 -0.89 5.27 -26.61 -0.14 -1.03 16 20 C 0.02 0.19 2.82 -91.69 -0.26 -0.07 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 22 C 0.15 1.62 6.99 -13.03 -0.09 1.53 16 23 N -0.25 -3.31 12.20 32.59 0.40 -2.91 16 24 N -0.35 -4.30 12.26 29.86 0.37 -3.93 16 25 C 0.42 3.92 9.72 -86.88 -0.84 3.07 16 26 N -0.80 -3.32 9.06 29.86 0.27 -3.05 16 27 O -0.25 -2.48 10.90 3.71 0.04 -2.44 16 28 C 0.07 0.70 4.72 -3.83 -0.02 0.68 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.09 5.70 -51.93 -0.30 0.79 16 36 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 37 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 38 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.77 6.22 -51.93 -0.32 0.45 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.43 0.98 8.95 -40.82 -0.37 0.62 16 46 H 0.42 0.62 8.95 -40.82 -0.37 0.25 16 47 H 0.08 0.86 8.01 -51.92 -0.42 0.45 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -36.70 392.14 -7.92 -44.62 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.50 Total: -2.71 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.59 Total: 7.48 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.16 Total: -56.28 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.13 Total: -16.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.70 -7.92 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413035112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.575 kcal (2) G-P(sol) polarization free energy of solvation -36.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds