Wall clock time and date at job start Tue Mar 31 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99760 * 2 1 4 4 C 1.50707 * 109.47312 * 269.99790 * 3 2 1 5 5 H 1.07997 * 119.99962 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99993 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00020 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00000 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46904 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46762 * 120.00307 * 8 6 4 11 11 H 1.48494 * 109.47088 * 240.00558 * 8 6 4 12 12 C 1.34776 * 119.99963 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99744 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99869 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.46853 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46712 * 179.97438 * 15 14 12 17 17 C 1.46846 * 111.00196 * 66.04546 * 16 15 14 18 18 C 1.53037 * 109.52110 * 185.83847 * 17 16 15 19 19 C 1.53123 * 109.27767 * 300.81388 * 18 17 16 20 20 C 1.53120 * 109.15700 * 57.65918 * 19 18 17 21 21 H 1.08999 * 109.50398 * 62.32322 * 20 19 18 22 22 C 1.50697 * 109.50219 * 182.40187 * 20 19 18 23 23 N 1.30071 * 126.21218 * 59.97649 * 22 20 19 24 24 N 1.28652 * 109.54613 * 179.97438 * 23 22 20 25 25 C 1.31074 * 109.31800 * 359.97438 * 24 23 22 26 26 N 1.38256 * 126.37421 * 179.74194 * 25 24 23 27 27 O 1.34587 * 107.25512 * 0.02562 * 25 24 23 28 28 C 1.46850 * 110.99733 * 190.25150 * 16 15 14 29 29 H 1.09001 * 109.47534 * 269.99781 * 1 2 3 30 30 H 1.09000 * 109.47075 * 29.99787 * 1 2 3 31 31 H 1.08998 * 109.47435 * 149.99539 * 1 2 3 32 32 H 1.08992 * 109.47789 * 30.00437 * 3 2 1 33 33 H 1.09001 * 109.46793 * 150.00715 * 3 2 1 34 34 H 0.97001 * 119.99917 * 179.97438 * 7 6 4 35 35 H 1.08990 * 109.47391 * 60.00324 * 14 12 2 36 36 H 1.09001 * 109.46865 * 299.99726 * 14 12 2 37 37 H 1.08990 * 109.47389 * 59.99672 * 15 14 12 38 38 H 1.09001 * 109.46630 * 299.99219 * 15 14 12 39 39 H 1.08995 * 109.46836 * 65.81926 * 17 16 15 40 40 H 1.09001 * 109.45077 * 305.84482 * 17 16 15 41 41 H 1.09000 * 109.50057 * 180.87855 * 18 17 16 42 42 H 1.08998 * 109.50591 * 60.76077 * 18 17 16 43 43 H 1.08997 * 109.52402 * 297.75420 * 19 18 17 44 44 H 1.09005 * 109.57390 * 177.59041 * 19 18 17 45 45 H 0.97002 * 119.99360 * 0.02562 * 26 25 24 46 46 H 0.96993 * 120.00470 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.46226 * 54.14180 * 28 16 15 48 48 H 1.08997 * 109.46089 * 294.18005 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6182 -0.6731 8 14 3.4367 3.4177 -3.4339 9 1 2.8588 2.4176 -4.3673 10 1 2.7986 4.7382 -3.6668 11 1 4.8991 3.5264 -3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6450 -4.9074 0.0001 17 6 0.8994 -5.0852 -1.2524 18 6 0.0348 -6.3444 -1.1585 19 6 0.9338 -7.5570 -0.9015 20 6 1.7350 -7.3253 0.3827 21 1 1.0514 -7.2348 1.2268 22 6 2.6659 -8.4880 0.6116 23 7 3.6099 -8.8860 -0.1899 24 7 4.2066 -9.9052 0.3204 25 6 3.6591 -10.1947 1.4756 26 7 4.0234 -11.2271 2.3199 27 8 2.6721 -9.3037 1.6841 28 6 2.5503 -6.0376 0.2441 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5137 34 1 4.0300 4.4441 -0.8503 35 1 0.7584 -2.5299 -0.8902 36 1 0.7590 -2.5302 0.8897 37 1 3.0063 -3.5775 0.8893 38 1 3.0061 -3.5775 -0.8906 39 1 1.6002 -5.1868 -2.0810 40 1 0.2609 -4.2180 -1.4210 41 1 -0.5066 -6.4847 -2.0941 42 1 -0.6757 -6.2378 -0.3388 43 1 1.6185 -7.6870 -1.7395 44 1 0.3192 -8.4505 -0.7911 45 1 4.7503 -11.8206 2.0744 46 1 3.5522 -11.3579 3.1575 47 1 3.1110 -5.8622 1.1623 48 1 3.2434 -6.1347 -0.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413035112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:43 Heat of formation + Delta-G solvation = -21.526363 kcal Electronic energy + Delta-G solvation = -28910.662018 eV Core-core repulsion = 24808.256103 eV Total energy + Delta-G solvation = -4102.405915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.09501 -40.83485 -39.95363 -37.14394 -36.66030 -36.39746 -35.40174 -34.70075 -32.74663 -31.77178 -29.76615 -29.38298 -27.29673 -26.24319 -25.54540 -24.49818 -24.18268 -23.40720 -22.31500 -20.70336 -19.86384 -19.14781 -18.69853 -18.41363 -18.09032 -17.94583 -17.26405 -17.09401 -16.76384 -16.52722 -16.18361 -15.82908 -15.51905 -15.20820 -14.83181 -14.60904 -14.44172 -14.01907 -13.76704 -13.62089 -13.48725 -13.43013 -13.32279 -13.18310 -12.88808 -12.84048 -12.78488 -12.67377 -12.53271 -12.42441 -12.20951 -12.10614 -11.89627 -11.67625 -11.60191 -11.49630 -11.39167 -10.65182 -10.57339 -9.45985 -9.41185 -9.37660 -8.22448 -6.37303 0.33631 0.77522 1.35721 1.38398 1.46905 1.50069 1.88227 2.25005 2.37362 2.49475 2.97396 3.06911 3.34435 3.67406 3.73760 3.85496 3.94593 4.02471 4.09136 4.18520 4.25386 4.29642 4.33730 4.45162 4.49117 4.61198 4.66491 4.68443 4.76866 4.80842 4.90461 4.96192 5.00210 5.01625 5.04117 5.07396 5.15362 5.20551 5.25412 5.46998 5.57625 5.81986 5.86293 5.93739 6.06641 6.07249 6.40091 6.70811 6.82919 7.28864 7.46818 7.52169 8.84644 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.001956 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.807737 B =14307.842153 C =14597.657542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.493 3.507 13 O -0.604 6.604 14 C -0.113 4.113 15 C 0.080 3.920 16 N -0.524 5.524 17 C 0.037 3.963 18 C -0.103 4.103 19 C -0.108 4.108 20 C 0.029 3.971 21 H 0.126 0.874 22 C 0.150 3.850 23 N -0.287 5.287 24 N -0.388 5.388 25 C 0.423 3.577 26 N -0.767 5.767 27 O -0.248 6.248 28 C 0.068 3.932 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.445 0.555 46 H 0.434 0.566 47 H 0.073 0.927 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 -30.257 5.867 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.152 4.152 15 C -0.048 4.048 16 N -0.248 5.248 17 C -0.090 4.090 18 C -0.141 4.141 19 C -0.147 4.147 20 C 0.009 3.991 21 H 0.144 0.856 22 C -0.067 4.067 23 N -0.130 5.130 24 N -0.246 5.246 25 C 0.118 3.882 26 N -0.334 5.334 27 O -0.128 6.128 28 C -0.061 4.061 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.283 0.717 46 H 0.268 0.732 47 H 0.092 0.908 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.675 -30.071 5.231 32.336 hybrid contribution 0.987 0.488 0.017 1.101 sum -9.688 -29.583 5.248 31.568 Atomic orbital electron populations 1.21951 0.77640 1.04088 1.02681 1.48199 1.08555 1.06316 1.71185 1.18749 0.91103 0.80644 0.95964 1.21747 1.36648 1.06427 0.93100 0.92801 1.25891 0.94993 0.96515 1.02021 1.70062 1.39030 1.14835 1.32975 0.85357 0.77810 0.78458 0.79114 1.19025 1.19306 1.20910 1.21443 0.87786 0.86835 0.75762 1.90640 1.16934 1.88312 1.52734 1.21554 0.98692 0.88334 1.06664 1.21606 0.94452 0.87970 1.00816 1.61910 1.26647 1.00430 1.35819 1.22425 0.97021 1.00496 0.89073 1.21556 0.97203 0.91176 1.04136 1.21665 0.98268 1.00094 0.94626 1.19696 0.92683 0.84291 1.02417 0.85568 1.27638 1.00353 0.96747 0.81955 1.74012 1.06362 1.06725 1.25943 1.74796 1.27614 1.14269 1.07877 1.23693 0.84845 0.88395 0.91220 1.40900 1.41954 1.28398 1.22160 1.84750 1.47613 1.36778 1.43651 1.21952 0.93636 0.89302 1.01232 0.91052 0.91779 0.88395 0.95838 0.98631 0.92436 0.86762 0.85663 0.91461 0.96192 0.95612 0.88712 0.88924 0.89160 0.92215 0.89800 0.71726 0.73176 0.90815 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.24 127.77 1.31 3.54 16 2 N -0.61 -25.85 2.86 -851.14 -2.43 -28.28 16 3 C 0.26 14.09 5.16 85.64 0.44 14.54 16 4 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.00 0.26 5.46 84.65 0.46 0.73 16 7 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 8 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.49 20.33 7.67 87.66 0.67 21.01 16 13 O -0.60 -31.82 15.56 -3.03 -0.05 -31.87 16 14 C -0.11 -2.97 4.19 29.85 0.12 -2.85 16 15 C 0.08 2.20 4.25 86.30 0.37 2.57 16 16 N -0.52 -10.71 4.66 -896.36 -4.17 -14.88 16 17 C 0.04 0.63 5.29 86.33 0.46 1.08 16 18 C -0.10 -1.17 6.09 30.65 0.19 -0.98 16 19 C -0.11 -1.51 5.27 30.68 0.16 -1.34 16 20 C 0.03 0.49 2.82 -11.49 -0.03 0.45 16 21 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 22 C 0.15 3.17 6.99 88.37 0.62 3.78 16 23 N -0.29 -7.60 12.20 -165.27 -2.02 -9.62 16 24 N -0.39 -9.71 12.26 -173.49 -2.13 -11.84 16 25 C 0.42 7.54 9.72 179.04 1.74 9.28 16 26 N -0.77 -4.97 9.06 -169.64 -1.54 -6.51 16 27 O -0.25 -4.70 10.90 -9.63 -0.11 -4.80 16 28 C 0.07 1.43 4.72 86.32 0.41 1.83 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.10 2.00 6.44 -2.39 -0.02 1.99 16 32 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.11 2.44 5.70 -2.39 -0.01 2.42 16 36 H 0.13 2.61 8.11 -2.39 -0.02 2.59 16 37 H 0.07 2.06 7.94 -2.39 -0.02 2.04 16 38 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 1.39 6.22 -2.39 -0.01 1.37 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.44 1.20 8.95 -92.71 -0.83 0.37 16 46 H 0.43 0.22 8.95 -92.71 -0.83 -0.61 16 47 H 0.07 1.62 8.01 -2.38 -0.02 1.60 16 48 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -85.16 392.14 -3.64 -88.80 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -0.66 Total: 5.90 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 7.16 Total: 22.28 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -12.00 Total: -127.88 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.15 Total: -36.67 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -85.16 -3.64 -88.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413035112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.273 kcal (2) G-P(sol) polarization free energy of solvation -85.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds