Wall clock time and date at job start Tue Mar 31 2020 20:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47097 * 2 1 4 4 C 1.46494 * 119.99958 * 269.99749 * 3 2 1 5 5 C 1.50700 * 109.47156 * 269.99763 * 4 3 2 6 6 H 1.08006 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47405 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47162 * 120.00186 * 9 7 5 12 12 H 1.48502 * 109.47137 * 239.99931 * 9 7 5 13 13 C 1.34776 * 119.99720 * 89.99966 * 3 2 1 14 14 O 1.21287 * 119.99812 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00534 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47313 * 180.02562 * 15 13 3 17 17 C 1.46906 * 111.00033 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47454 * 300.00324 * 17 16 15 19 19 C 1.53000 * 109.47318 * 180.02562 * 17 16 15 20 20 N 1.46495 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.34957 * 126.03329 * 124.97448 * 20 19 17 22 22 C 1.35317 * 107.74055 * 179.97438 * 21 20 19 23 23 C 1.39868 * 107.92640 * 0.02562 * 22 21 20 24 24 N 1.30844 * 108.19764 * 359.97438 * 23 22 21 25 25 C 1.50700 * 109.47006 * 60.00473 * 17 16 15 26 26 N 1.34776 * 120.00010 * 34.99167 * 25 17 16 27 27 O 1.21274 * 120.00224 * 215.00401 * 25 17 16 28 28 H 1.08998 * 109.47303 * 300.00121 * 1 2 3 29 29 H 1.08999 * 109.47069 * 60.00439 * 1 2 3 30 30 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47796 * 240.00043 * 2 1 3 32 32 H 1.08999 * 109.47069 * 119.99561 * 2 1 3 33 33 H 1.09003 * 109.47325 * 30.00084 * 4 3 2 34 34 H 1.09004 * 109.47151 * 150.00308 * 4 3 2 35 35 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47189 * 60.00229 * 15 13 3 37 37 H 1.09001 * 109.47265 * 300.00657 * 15 13 3 38 38 H 1.00900 * 111.00602 * 303.95284 * 16 15 13 39 39 H 1.09001 * 109.46903 * 300.00018 * 18 17 16 40 40 H 1.09005 * 109.47059 * 59.99581 * 18 17 16 41 41 H 1.08992 * 109.47366 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.46871 * 60.00085 * 19 17 16 43 43 H 1.08999 * 109.47317 * 300.00688 * 19 17 16 44 44 H 1.07995 * 126.12756 * 0.02562 * 21 20 19 45 45 H 1.08004 * 126.03278 * 180.02562 * 22 21 20 46 46 H 1.07995 * 125.89923 * 180.25722 * 23 22 21 47 47 H 0.96998 * 120.00003 * 0.02562 * 26 25 17 48 48 H 0.97003 * 120.00048 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7036 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3905 -2.8773 8 7 3.3498 3.1274 -3.6170 9 14 5.9136 2.0964 -3.4168 10 1 6.6009 1.2405 -2.4167 11 1 5.9207 1.4183 -4.7378 12 1 6.6217 3.3973 -3.5243 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0744 1.5467 4.8802 18 6 0.6040 1.1366 4.9838 19 6 2.4149 2.5134 6.0162 20 7 2.1816 1.8551 7.3040 21 6 3.0813 1.7193 8.3007 22 6 2.4771 1.0565 9.3140 23 6 1.1635 0.7773 8.9231 24 7 0.9852 1.2558 7.7184 25 6 2.9461 0.3218 4.9841 26 7 4.1786 0.3237 4.4389 27 8 2.5385 -0.6657 5.5581 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 3.6759 3.5178 -4.4429 36 1 2.6211 0.4187 2.5303 37 1 0.9431 1.0126 2.5299 38 1 3.2572 2.5447 3.5222 39 1 -0.0265 2.0225 4.9087 40 1 0.3610 0.4480 4.1745 41 1 0.4301 0.6466 5.9418 42 1 1.7841 3.3991 5.9409 43 1 3.4623 2.8060 5.9426 44 1 4.1005 2.0763 8.2915 45 1 2.9295 0.7902 10.2579 46 1 0.4229 0.2605 9.5153 47 1 4.5048 1.1135 3.9800 48 1 4.7399 -0.4646 4.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413073661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:10 Heat of formation + Delta-G solvation = 28.091457 kcal Electronic energy + Delta-G solvation = -30443.950177 eV Core-core repulsion = 26343.695852 eV Total energy + Delta-G solvation = -4100.254324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54288 -40.33760 -39.02151 -36.67667 -35.32635 -33.98460 -33.32564 -32.79196 -30.84329 -30.14775 -29.69639 -27.91127 -27.06739 -25.52342 -23.73763 -23.06636 -22.40255 -21.22359 -21.11946 -19.61358 -18.62971 -18.22347 -17.44179 -17.07117 -16.53696 -16.33076 -15.96720 -15.54034 -15.31604 -14.88987 -14.56942 -14.36431 -14.29008 -14.12584 -13.65668 -13.45803 -13.33615 -13.29633 -12.96816 -12.67801 -12.50190 -12.26348 -12.09149 -12.01899 -11.98297 -11.61901 -11.36240 -11.21547 -10.94695 -10.81749 -10.62536 -10.53085 -10.39806 -10.18983 -9.95271 -9.67922 -9.51934 -9.06946 -8.74157 -8.62731 -8.49223 -7.72797 -6.09743 -4.14800 1.73137 2.17404 2.35826 2.74052 3.13360 3.24543 3.29530 3.33124 3.35897 3.49996 4.06056 4.23071 4.33007 4.39429 4.53622 4.63244 4.80525 4.93334 5.07088 5.13448 5.20328 5.24849 5.31710 5.40591 5.42868 5.60035 5.60611 5.74133 5.77591 5.83048 5.84571 6.00041 6.18946 6.25956 6.33726 6.45364 6.50183 6.68748 6.81047 6.89957 7.03203 7.07428 7.39875 7.48275 7.56504 7.86343 7.95797 8.17562 8.34822 8.83630 9.01390 9.50382 10.98328 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.002718 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.364003 B =10300.210345 C =10805.433061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.033 3.967 16 N -0.648 5.648 17 C 0.091 3.909 18 C -0.141 4.141 19 C 0.149 3.851 20 N -0.367 5.367 21 C 0.052 3.948 22 C -0.272 4.272 23 C 0.042 3.958 24 N -0.275 5.275 25 C 0.489 3.511 26 N -0.859 5.859 27 O -0.523 6.523 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.350 0.650 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.169 0.831 45 H 0.144 0.856 46 H 0.181 0.819 47 H 0.399 0.601 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -5.386 21.472 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.405 6.405 15 C -0.099 4.099 16 N -0.283 5.283 17 C -0.005 4.005 18 C -0.198 4.198 19 C 0.026 3.974 20 N -0.150 5.150 21 C -0.093 4.093 22 C -0.301 4.301 23 C -0.144 4.144 24 N -0.096 5.096 25 C 0.271 3.729 26 N -0.424 5.424 27 O -0.396 6.396 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.171 0.829 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.186 0.814 45 H 0.162 0.838 46 H 0.198 0.802 47 H 0.229 0.771 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.323 -4.680 20.573 21.359 hybrid contribution 2.923 -0.918 -0.087 3.065 sum -0.400 -5.598 20.486 21.241 Atomic orbital electron populations 1.22223 0.96602 1.01546 1.02453 1.21431 0.93714 0.84191 1.02572 1.48239 1.63684 1.13197 1.07645 1.19287 0.96268 0.93698 0.77994 1.21437 0.96871 1.31852 1.06317 0.92559 1.24940 0.97832 0.94934 0.96412 1.69941 1.35585 1.33340 1.14327 0.86452 0.84619 0.78013 0.78347 1.19922 1.20958 1.20868 1.19994 0.79120 0.87016 0.84679 1.90684 1.45429 1.17485 1.86889 1.22104 1.03490 0.94264 0.90052 1.60140 1.32233 1.37178 0.98767 1.21584 0.98380 0.89959 0.90545 1.22087 0.90370 1.02325 1.05045 1.21583 1.03266 0.94643 0.77863 1.48433 1.08948 1.44571 1.13049 1.22502 0.96370 1.01129 0.89329 1.21452 0.95853 1.10868 1.01956 1.23900 0.97205 0.99934 0.93380 1.77227 1.03911 1.15077 1.13418 1.21681 0.82352 0.90923 0.77942 1.44051 1.17746 1.20434 1.60215 1.90747 1.72640 1.34967 1.41209 0.93006 0.91864 0.92103 0.89819 0.92098 0.94967 0.93769 0.92724 0.92419 0.87737 0.82869 0.90969 0.92657 0.87527 0.87091 0.88356 0.81357 0.83796 0.80245 0.77149 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -11.96 2.46 -175.06 -0.43 -12.39 16 4 C 0.25 6.23 5.16 -5.20 -0.03 6.21 16 5 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.51 9.77 7.71 -10.99 -0.08 9.68 16 14 O -0.53 -12.26 15.78 5.55 0.09 -12.18 16 15 C 0.03 0.46 3.97 -4.98 -0.02 0.44 16 16 N -0.65 -7.91 5.55 -102.40 -0.57 -8.48 16 17 C 0.09 1.01 0.74 -132.75 -0.10 0.91 16 18 C -0.14 -1.73 7.35 37.16 0.27 -1.46 16 19 C 0.15 1.38 5.72 -4.04 -0.02 1.35 16 20 N -0.37 -3.88 3.25 -61.37 -0.20 -4.08 16 21 C 0.05 0.48 11.45 -17.22 -0.20 0.28 16 22 C -0.27 -2.51 10.80 -40.01 -0.43 -2.95 16 23 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 24 N -0.28 -3.35 9.34 30.62 0.29 -3.06 16 25 C 0.49 5.86 5.34 -10.99 -0.06 5.80 16 26 N -0.86 -7.82 8.02 31.22 0.25 -7.57 16 27 O -0.52 -8.22 16.93 5.56 0.09 -8.13 16 28 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 0.77 5.83 -51.93 -0.30 0.46 16 37 H 0.10 1.41 5.34 -51.93 -0.28 1.13 16 38 H 0.35 4.02 7.02 -39.29 -0.28 3.74 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.70 6.40 -51.93 -0.33 0.36 16 41 H 0.11 1.46 4.91 -51.93 -0.25 1.20 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 46 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 47 H 0.40 3.11 7.31 -40.82 -0.30 2.81 16 48 H 0.40 3.32 8.93 -40.82 -0.36 2.95 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -35.88 390.67 -6.78 -42.67 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.96 Total: 9.26 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.94 Total: 7.11 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.07 Total: -60.85 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.88 -6.78 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413073661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.757 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds