Wall clock time and date at job start Tue Mar 31 2020 20:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47097 * 2 1 4 4 C 1.46494 * 119.99958 * 269.99749 * 3 2 1 5 5 C 1.50700 * 109.47156 * 269.99763 * 4 3 2 6 6 H 1.08006 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47405 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47162 * 120.00186 * 9 7 5 12 12 H 1.48502 * 109.47137 * 239.99931 * 9 7 5 13 13 C 1.34776 * 119.99720 * 89.99966 * 3 2 1 14 14 O 1.21287 * 119.99812 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00534 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47313 * 180.02562 * 15 13 3 17 17 C 1.46906 * 111.00033 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47454 * 300.00324 * 17 16 15 19 19 C 1.53000 * 109.47318 * 180.02562 * 17 16 15 20 20 N 1.46495 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.34957 * 126.03329 * 124.97448 * 20 19 17 22 22 C 1.35317 * 107.74055 * 179.97438 * 21 20 19 23 23 C 1.39868 * 107.92640 * 0.02562 * 22 21 20 24 24 N 1.30844 * 108.19764 * 359.97438 * 23 22 21 25 25 C 1.50700 * 109.47006 * 60.00473 * 17 16 15 26 26 N 1.34776 * 120.00010 * 34.99167 * 25 17 16 27 27 O 1.21274 * 120.00224 * 215.00401 * 25 17 16 28 28 H 1.08998 * 109.47303 * 300.00121 * 1 2 3 29 29 H 1.08999 * 109.47069 * 60.00439 * 1 2 3 30 30 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47796 * 240.00043 * 2 1 3 32 32 H 1.08999 * 109.47069 * 119.99561 * 2 1 3 33 33 H 1.09003 * 109.47325 * 30.00084 * 4 3 2 34 34 H 1.09004 * 109.47151 * 150.00308 * 4 3 2 35 35 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47189 * 60.00229 * 15 13 3 37 37 H 1.09001 * 109.47265 * 300.00657 * 15 13 3 38 38 H 1.00900 * 111.00602 * 303.95284 * 16 15 13 39 39 H 1.09001 * 109.46903 * 300.00018 * 18 17 16 40 40 H 1.09005 * 109.47059 * 59.99581 * 18 17 16 41 41 H 1.08992 * 109.47366 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.46871 * 60.00085 * 19 17 16 43 43 H 1.08999 * 109.47317 * 300.00688 * 19 17 16 44 44 H 1.07995 * 126.12756 * 0.02562 * 21 20 19 45 45 H 1.08004 * 126.03278 * 180.02562 * 22 21 20 46 46 H 1.07995 * 125.89923 * 180.25722 * 23 22 21 47 47 H 0.96998 * 120.00003 * 0.02562 * 26 25 17 48 48 H 0.97003 * 120.00048 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7036 6 1 4.3427 1.2303 -1.0960 7 6 4.1495 2.3905 -2.8773 8 7 3.3498 3.1274 -3.6170 9 14 5.9136 2.0964 -3.4168 10 1 6.6009 1.2405 -2.4167 11 1 5.9207 1.4183 -4.7378 12 1 6.6217 3.3973 -3.5243 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0744 1.5467 4.8802 18 6 0.6040 1.1366 4.9838 19 6 2.4149 2.5134 6.0162 20 7 2.1816 1.8551 7.3040 21 6 3.0813 1.7193 8.3007 22 6 2.4771 1.0565 9.3140 23 6 1.1635 0.7773 8.9231 24 7 0.9852 1.2558 7.7184 25 6 2.9461 0.3218 4.9841 26 7 4.1786 0.3237 4.4389 27 8 2.5385 -0.6657 5.5581 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 3.6759 3.5178 -4.4429 36 1 2.6211 0.4187 2.5303 37 1 0.9431 1.0126 2.5299 38 1 3.2572 2.5447 3.5222 39 1 -0.0265 2.0225 4.9087 40 1 0.3610 0.4480 4.1745 41 1 0.4301 0.6466 5.9418 42 1 1.7841 3.3991 5.9409 43 1 3.4623 2.8060 5.9426 44 1 4.1005 2.0763 8.2915 45 1 2.9295 0.7902 10.2579 46 1 0.4229 0.2605 9.5153 47 1 4.5048 1.1135 3.9800 48 1 4.7399 -0.4646 4.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413073661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:09 Heat of formation + Delta-G solvation = -0.047179 kcal Electronic energy + Delta-G solvation = -30445.170359 eV Core-core repulsion = 26343.695852 eV Total energy + Delta-G solvation = -4101.474507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32162 -41.30789 -40.46805 -37.73606 -36.90084 -34.96610 -34.78766 -34.12557 -31.84163 -31.53239 -30.54493 -29.39914 -28.20500 -26.80062 -24.87715 -24.50381 -23.88561 -21.94235 -21.87990 -20.49581 -20.05719 -19.15375 -18.63477 -18.26786 -18.13512 -17.42047 -17.30711 -16.80111 -16.51606 -16.27308 -15.75071 -15.32398 -15.24257 -15.18496 -14.81127 -14.70560 -14.65723 -14.31198 -14.11545 -13.67833 -13.54099 -13.50097 -13.40935 -13.24615 -13.14259 -12.99756 -12.92072 -12.68147 -12.51297 -12.23234 -12.17062 -11.94665 -11.68194 -11.52871 -11.20068 -10.83222 -10.64048 -10.62544 -10.26860 -9.69451 -9.44570 -9.43841 -8.21195 -6.35883 1.02584 1.35050 1.37917 1.39460 1.50907 1.54416 1.79826 2.04342 2.17175 2.30234 2.40833 2.94221 3.08934 3.42675 3.48764 3.61784 3.78067 3.99104 4.03740 4.06939 4.16071 4.25418 4.33483 4.40334 4.46547 4.59168 4.74191 4.80847 4.82143 4.91297 4.95024 4.95153 5.04674 5.19769 5.21611 5.32562 5.35469 5.44606 5.58233 5.73121 5.85187 5.91537 5.97584 6.07011 6.14258 6.24363 6.70804 6.78890 6.84505 7.11097 7.28969 7.46733 8.86153 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.002718 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.364003 B =10300.210345 C =10805.433061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.262 3.738 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.282 1.282 13 C 0.502 3.498 14 O -0.574 6.574 15 C 0.052 3.948 16 N -0.650 5.650 17 C 0.100 3.900 18 C -0.139 4.139 19 C 0.146 3.854 20 N -0.375 5.375 21 C 0.049 3.951 22 C -0.283 4.283 23 C 0.029 3.971 24 N -0.313 5.313 25 C 0.492 3.508 26 N -0.843 5.843 27 O -0.561 6.561 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.019 0.981 34 H -0.001 1.001 35 H 0.266 0.734 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.357 0.643 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.201 0.799 45 H 0.164 0.836 46 H 0.198 0.802 47 H 0.408 0.592 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -6.567 22.827 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.333 5.333 4 C 0.141 3.859 5 C -0.576 4.576 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.208 1.208 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.079 4.079 16 N -0.286 5.286 17 C 0.005 3.995 18 C -0.197 4.197 19 C 0.024 3.976 20 N -0.157 5.157 21 C -0.097 4.097 22 C -0.312 4.312 23 C -0.156 4.156 24 N -0.134 5.134 25 C 0.275 3.725 26 N -0.409 5.409 27 O -0.437 6.437 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.178 0.822 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.218 0.782 45 H 0.182 0.818 46 H 0.215 0.785 47 H 0.239 0.761 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.764 -5.889 21.939 22.784 hybrid contribution 2.410 -0.541 -0.475 2.515 sum 0.645 -6.430 21.464 22.416 Atomic orbital electron populations 1.22166 0.94742 1.03430 1.01797 1.21702 0.95239 0.81670 1.03625 1.48228 1.63941 1.14821 1.06332 1.18720 0.95370 0.91612 0.80182 1.21709 0.97691 1.31734 1.06489 0.92575 1.25863 1.02315 0.94548 0.96509 1.70066 1.37726 1.34290 1.14839 0.85361 0.79105 0.77963 0.78315 1.18798 1.19936 1.20799 1.20832 0.77721 0.86618 0.85898 1.90657 1.47368 1.19646 1.87697 1.21893 1.04434 0.94035 0.87583 1.60077 1.32856 1.36934 0.98688 1.21477 0.97539 0.90110 0.90389 1.22037 0.91375 1.02054 1.04257 1.21708 1.05176 0.93874 0.76889 1.48517 1.08897 1.44771 1.13551 1.23103 0.97431 1.00406 0.88713 1.21803 0.95542 1.10866 1.02967 1.24382 0.98375 0.99668 0.93215 1.77166 1.05297 1.16485 1.14471 1.21734 0.82896 0.90413 0.77495 1.43935 1.16872 1.21045 1.59028 1.90742 1.73619 1.36225 1.43158 0.92361 0.93833 0.88906 0.90659 0.89086 0.96273 0.98238 0.92489 0.90930 0.86639 0.82159 0.91036 0.93141 0.88599 0.86974 0.85358 0.78239 0.81844 0.78478 0.76121 0.75821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.24 71.98 0.74 -3.39 16 2 C 0.10 3.01 5.93 86.38 0.51 3.52 16 3 N -0.60 -24.28 2.46 -826.15 -2.03 -26.30 16 4 C 0.26 13.75 5.16 85.63 0.44 14.19 16 5 C -0.54 -29.81 9.39 25.60 0.24 -29.57 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.36 5.46 84.65 0.46 0.83 16 8 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 9 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.50 19.21 7.71 87.66 0.68 19.89 16 14 O -0.57 -27.09 15.78 -3.05 -0.05 -27.14 16 15 C 0.05 1.38 3.97 85.56 0.34 1.72 16 16 N -0.65 -14.79 5.55 -477.88 -2.65 -17.45 16 17 C 0.10 2.05 0.74 2.78 0.00 2.05 16 18 C -0.14 -3.32 7.35 71.98 0.53 -2.79 16 19 C 0.15 2.41 5.72 86.38 0.49 2.90 16 20 N -0.37 -7.31 3.25 -348.07 -1.13 -8.44 16 21 C 0.05 0.78 11.45 83.54 0.96 1.73 16 22 C -0.28 -4.73 10.80 21.99 0.24 -4.49 16 23 C 0.03 0.58 12.03 85.23 1.03 1.60 16 24 N -0.31 -7.41 9.34 -57.02 -0.53 -7.94 16 25 C 0.49 10.80 5.34 87.66 0.47 11.26 16 26 N -0.84 -13.17 8.02 -173.54 -1.39 -14.56 16 27 O -0.56 -16.86 16.93 -3.01 -0.05 -16.91 16 28 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 32 H 0.09 2.19 6.44 -2.39 -0.02 2.18 16 33 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 34 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.07 1.73 5.83 -2.39 -0.01 1.71 16 37 H 0.12 2.87 5.34 -2.39 -0.01 2.85 16 38 H 0.36 7.49 7.02 -89.69 -0.63 6.86 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.21 6.40 -2.38 -0.02 1.19 16 41 H 0.10 2.59 4.91 -2.39 -0.01 2.58 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.13 1.29 8.07 -2.39 -0.02 1.27 16 44 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 47 H 0.41 5.20 7.31 -92.71 -0.68 4.52 16 48 H 0.41 5.67 8.93 -92.71 -0.83 4.85 16 Total: -1.00 -80.24 390.67 0.48 -79.76 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -1.12 Total: 29.00 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 7.12 Total: 19.46 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -7.45 Total: -129.67 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.10 Total: -44.05 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -80.24 0.48 -79.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413073661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.715 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds