Wall clock time and date at job start Tue Mar 31 2020 20:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46790 * 2 1 4 4 C 1.46494 * 120.00066 * 90.00491 * 3 2 1 5 5 C 1.50702 * 109.47558 * 89.99825 * 4 3 2 6 6 H 1.08005 * 119.99708 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00013 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99739 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00428 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47307 * 270.00246 * 9 7 5 11 11 H 1.48501 * 109.47014 * 30.00215 * 9 7 5 12 12 H 1.48499 * 109.47385 * 150.00158 * 9 7 5 13 13 C 1.34773 * 119.99812 * 270.00050 * 3 2 1 14 14 O 1.21285 * 119.99620 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00499 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47264 * 173.74832 * 15 13 3 17 17 C 1.46850 * 110.99617 * 169.40368 * 16 15 13 18 18 C 1.53045 * 109.52234 * 185.83968 * 17 16 15 19 19 C 1.53125 * 109.27431 * 300.81815 * 18 17 16 20 20 C 1.53114 * 109.16009 * 57.65661 * 19 18 17 21 21 H 1.08999 * 109.54042 * 62.30111 * 20 19 18 22 22 C 1.50699 * 109.50334 * 182.40517 * 20 19 18 23 23 N 1.30074 * 126.21422 * 59.48776 * 22 20 19 24 24 N 1.28656 * 109.54493 * 179.82857 * 23 22 20 25 25 C 1.31076 * 109.31296 * 0.44576 * 24 23 22 26 26 N 1.38262 * 126.36508 * 179.75397 * 25 24 23 27 27 O 1.34579 * 107.26190 * 359.73111 * 25 24 23 28 28 C 1.46840 * 110.99929 * 293.60756 * 16 15 13 29 29 H 1.08998 * 109.47269 * 60.00146 * 1 2 3 30 30 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46893 * 299.99721 * 1 2 3 32 32 H 1.09001 * 109.46893 * 240.00279 * 2 1 3 33 33 H 1.08998 * 109.47269 * 119.99854 * 2 1 3 34 34 H 1.09001 * 109.47350 * 329.99412 * 4 3 2 35 35 H 1.08999 * 109.47373 * 210.00181 * 4 3 2 36 36 H 0.97000 * 119.99764 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46771 * 293.75083 * 15 13 3 38 38 H 1.09002 * 109.46684 * 53.74376 * 15 13 3 39 39 H 1.09008 * 109.46235 * 305.84983 * 17 16 15 40 40 H 1.08996 * 109.46867 * 65.82220 * 17 16 15 41 41 H 1.08992 * 109.50471 * 180.87687 * 18 17 16 42 42 H 1.08995 * 109.53227 * 60.77512 * 18 17 16 43 43 H 1.09000 * 109.52000 * 297.74830 * 19 18 17 44 44 H 1.08999 * 109.57019 * 177.58973 * 19 18 17 45 45 H 0.97003 * 120.00072 * 179.97438 * 26 25 24 46 46 H 0.96998 * 120.00701 * 359.96976 * 26 25 24 47 47 H 1.08999 * 109.46565 * 294.17846 * 28 16 15 48 48 H 1.09003 * 109.46356 * 54.15921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3427 1.2303 1.0961 7 6 4.1491 2.3898 2.8779 8 7 5.3914 2.1836 3.2572 9 14 3.0129 3.4352 3.9292 10 1 3.1162 4.8555 3.5081 11 1 1.6131 2.9691 3.7593 12 1 3.4058 3.3120 5.3559 13 6 2.2428 2.0166 -1.1672 14 8 2.6475 3.1599 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.1649 2.2500 -3.5847 17 6 2.1762 1.5471 -4.8740 18 6 2.5033 2.5379 -5.9937 19 6 1.4516 3.6508 -6.0071 20 6 1.4265 4.3349 -4.6376 21 1 2.3946 4.7962 -4.4426 22 6 0.3531 5.3926 -4.6232 23 7 -0.9174 5.2009 -4.8254 24 7 -1.5415 6.3224 -4.7364 25 6 -0.6813 7.2780 -4.4813 26 7 -0.9710 8.6204 -4.3207 27 8 0.5360 6.7095 -4.4043 28 6 1.1307 3.2920 -3.5572 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6878 2.0284 35 1 2.0954 3.1410 1.1384 36 1 5.7175 2.5741 4.0831 37 1 2.6977 0.4834 -2.5802 38 1 0.9737 0.9155 -2.4829 39 1 2.9313 0.7612 -4.8526 40 1 1.1967 1.1047 -5.0552 41 1 2.4964 2.0190 -6.9522 42 1 3.4888 2.9705 -5.8212 43 1 0.4716 3.2232 -6.2189 44 1 1.7037 4.3821 -6.7750 45 1 -0.2585 9.2513 -4.1328 46 1 -1.8867 8.9314 -4.3960 47 1 0.1560 2.8415 -3.7445 48 1 1.1262 3.7736 -2.5793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414018728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:42 Heat of formation + Delta-G solvation = 20.782574 kcal Electronic energy + Delta-G solvation = -30159.163013 eV Core-core repulsion = 26058.591751 eV Total energy + Delta-G solvation = -4100.571261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.11879 -39.79947 -38.38283 -36.13898 -35.60160 -35.32694 -33.92625 -32.66903 -31.83649 -30.33231 -28.83149 -28.50245 -26.67403 -24.61216 -23.56682 -23.26481 -22.95756 -22.16208 -21.66963 -19.84238 -18.37802 -18.26264 -17.42107 -17.26048 -16.90331 -16.69055 -16.44637 -15.83147 -15.40984 -15.14115 -14.67156 -14.47269 -14.21229 -13.77811 -13.58538 -13.46021 -13.37745 -12.93157 -12.54319 -12.48173 -12.41864 -12.22742 -12.02323 -11.84539 -11.80709 -11.69463 -11.53927 -11.39019 -11.07883 -10.96588 -10.84407 -10.77108 -10.67227 -10.60555 -10.46872 -10.12785 -9.51068 -8.96610 -8.57365 -8.56998 -8.22952 -7.67481 -6.06817 -4.04995 1.29295 1.65392 2.44907 3.19383 3.29707 3.35582 3.37558 3.38676 3.59452 4.10348 4.28042 4.41006 4.59449 4.66580 4.79750 4.89370 4.98662 5.05732 5.20009 5.21797 5.26011 5.28614 5.32846 5.41867 5.45810 5.51191 5.55789 5.62499 5.65527 5.71332 5.77341 5.86953 5.95281 5.97944 6.05567 6.16024 6.21902 6.40323 6.48432 6.70152 6.89406 6.91820 6.99561 7.09068 7.39271 7.63711 8.29656 8.40479 8.49658 8.96274 9.04980 9.53902 11.06681 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.003336 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.327651 B = 8390.829843 C = 9768.278471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.285 1.285 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.040 3.960 16 N -0.517 5.517 17 C 0.052 3.948 18 C -0.113 4.113 19 C -0.110 4.110 20 C 0.020 3.980 21 H 0.110 0.890 22 C 0.157 3.843 23 N -0.260 5.260 24 N -0.348 5.348 25 C 0.417 3.583 26 N -0.796 5.796 27 O -0.243 6.243 28 C 0.066 3.934 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.419 0.581 46 H 0.434 0.566 47 H 0.042 0.958 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 3.268 -18.923 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.564 4.564 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.191 1.191 12 H -0.211 1.211 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.091 4.091 16 N -0.242 5.242 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.149 4.149 20 C 0.000 4.000 21 H 0.129 0.871 22 C -0.058 4.058 23 N -0.105 5.105 24 N -0.206 5.206 25 C 0.114 3.886 26 N -0.360 5.360 27 O -0.123 6.123 28 C -0.062 4.062 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.250 0.750 46 H 0.269 0.731 47 H 0.061 0.939 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.175 3.455 -18.946 22.784 hybrid contribution -0.178 1.294 1.032 1.664 sum -12.353 4.749 -17.915 22.273 Atomic orbital electron populations 1.22243 0.96865 1.01570 1.02177 1.21428 0.93290 0.83949 1.03072 1.47952 1.64468 1.13404 1.06990 1.19610 0.97254 0.93284 0.80105 1.21338 0.95347 1.32759 1.07001 0.90714 1.24851 0.94964 0.95824 0.97369 1.69902 1.15097 1.45092 1.23570 0.86869 0.81503 0.81623 0.79788 1.19995 1.19123 1.21090 1.20175 0.78600 0.87153 0.84727 1.90654 1.44417 1.17923 1.86818 1.22050 1.01474 0.95246 0.90322 1.61414 1.48270 1.12791 1.01722 1.22179 1.00475 0.96247 0.88649 1.21564 0.99556 0.96052 0.97909 1.21662 1.00726 0.98060 0.94405 1.19655 0.93663 0.89262 0.97430 0.87146 1.27346 0.95844 0.79979 1.02642 1.74046 1.02561 1.17810 1.16051 1.74849 1.24542 0.93858 1.27317 1.23338 0.79458 0.90065 0.95789 1.40747 1.13863 0.99755 1.81614 1.84778 1.32746 1.23052 1.71738 1.22106 0.92356 0.92269 0.99511 0.93103 0.91957 0.92233 0.91495 0.89690 0.95387 0.94768 0.92616 0.87870 0.92361 0.90168 0.94562 0.90703 0.90415 0.90718 0.91352 0.75007 0.73110 0.93935 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.18 37.16 0.38 -1.77 16 2 C 0.11 1.63 5.85 -4.04 -0.02 1.60 16 3 N -0.60 -12.08 2.46 -175.06 -0.43 -12.51 16 4 C 0.22 5.34 4.23 -5.20 -0.02 5.32 16 5 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.36 8.06 -52.48 -0.42 1.93 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 9 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.18 7.20 -10.99 -0.08 10.10 16 14 O -0.52 -12.67 14.29 5.55 0.08 -12.60 16 15 C 0.04 0.58 3.91 -4.98 -0.02 0.56 16 16 N -0.52 -7.24 4.35 -236.10 -1.03 -8.27 16 17 C 0.05 0.54 5.46 -3.83 -0.02 0.51 16 18 C -0.11 -1.01 6.09 -26.64 -0.16 -1.17 16 19 C -0.11 -1.09 5.27 -26.61 -0.14 -1.23 16 20 C 0.02 0.26 2.82 -91.69 -0.26 0.00 16 21 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 22 C 0.16 2.22 6.99 -13.03 -0.09 2.12 16 23 N -0.26 -3.96 12.20 32.59 0.40 -3.57 16 24 N -0.35 -5.09 12.26 29.86 0.37 -4.72 16 25 C 0.42 5.08 9.72 -86.87 -0.84 4.23 16 26 N -0.80 -5.40 9.06 29.86 0.27 -5.13 16 27 O -0.24 -3.33 10.90 3.72 0.04 -3.29 16 28 C 0.07 0.95 4.38 -3.83 -0.02 0.94 16 29 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.84 6.61 -51.93 -0.34 0.50 16 33 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.03 0.90 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 1.33 7.55 -51.93 -0.39 0.94 16 38 H 0.06 0.73 6.83 -51.93 -0.35 0.37 16 39 H 0.08 0.74 8.01 -51.92 -0.42 0.32 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.42 1.81 8.95 -40.82 -0.37 1.44 16 46 H 0.43 1.94 8.95 -40.82 -0.37 1.58 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.71 6.06 -51.93 -0.31 1.39 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -37.32 386.99 -7.57 -44.89 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.46 Total: 1.56 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.74 Total: 7.75 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.35 Total: -61.24 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.12 Total: -15.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.32 -7.57 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414018728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.672 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds