Wall clock time and date at job start Tue Mar 31 2020 20:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46790 * 2 1 4 4 C 1.46494 * 120.00066 * 90.00491 * 3 2 1 5 5 C 1.50702 * 109.47558 * 89.99825 * 4 3 2 6 6 H 1.08005 * 119.99708 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00013 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99739 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00428 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47307 * 270.00246 * 9 7 5 11 11 H 1.48501 * 109.47014 * 30.00215 * 9 7 5 12 12 H 1.48499 * 109.47385 * 150.00158 * 9 7 5 13 13 C 1.34773 * 119.99812 * 270.00050 * 3 2 1 14 14 O 1.21285 * 119.99620 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00499 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47264 * 173.74832 * 15 13 3 17 17 C 1.46850 * 110.99617 * 169.40368 * 16 15 13 18 18 C 1.53045 * 109.52234 * 185.83968 * 17 16 15 19 19 C 1.53125 * 109.27431 * 300.81815 * 18 17 16 20 20 C 1.53114 * 109.16009 * 57.65661 * 19 18 17 21 21 H 1.08999 * 109.54042 * 62.30111 * 20 19 18 22 22 C 1.50699 * 109.50334 * 182.40517 * 20 19 18 23 23 N 1.30074 * 126.21422 * 59.48776 * 22 20 19 24 24 N 1.28656 * 109.54493 * 179.82857 * 23 22 20 25 25 C 1.31076 * 109.31296 * 0.44576 * 24 23 22 26 26 N 1.38262 * 126.36508 * 179.75397 * 25 24 23 27 27 O 1.34579 * 107.26190 * 359.73111 * 25 24 23 28 28 C 1.46840 * 110.99929 * 293.60756 * 16 15 13 29 29 H 1.08998 * 109.47269 * 60.00146 * 1 2 3 30 30 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46893 * 299.99721 * 1 2 3 32 32 H 1.09001 * 109.46893 * 240.00279 * 2 1 3 33 33 H 1.08998 * 109.47269 * 119.99854 * 2 1 3 34 34 H 1.09001 * 109.47350 * 329.99412 * 4 3 2 35 35 H 1.08999 * 109.47373 * 210.00181 * 4 3 2 36 36 H 0.97000 * 119.99764 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46771 * 293.75083 * 15 13 3 38 38 H 1.09002 * 109.46684 * 53.74376 * 15 13 3 39 39 H 1.09008 * 109.46235 * 305.84983 * 17 16 15 40 40 H 1.08996 * 109.46867 * 65.82220 * 17 16 15 41 41 H 1.08992 * 109.50471 * 180.87687 * 18 17 16 42 42 H 1.08995 * 109.53227 * 60.77512 * 18 17 16 43 43 H 1.09000 * 109.52000 * 297.74830 * 19 18 17 44 44 H 1.08999 * 109.57019 * 177.58973 * 19 18 17 45 45 H 0.97003 * 120.00072 * 179.97438 * 26 25 24 46 46 H 0.96998 * 120.00701 * 359.96976 * 26 25 24 47 47 H 1.08999 * 109.46565 * 294.17846 * 28 16 15 48 48 H 1.09003 * 109.46356 * 54.15921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3427 1.2303 1.0961 7 6 4.1491 2.3898 2.8779 8 7 5.3914 2.1836 3.2572 9 14 3.0129 3.4352 3.9292 10 1 3.1162 4.8555 3.5081 11 1 1.6131 2.9691 3.7593 12 1 3.4058 3.3120 5.3559 13 6 2.2428 2.0166 -1.1672 14 8 2.6475 3.1599 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.1649 2.2500 -3.5847 17 6 2.1762 1.5471 -4.8740 18 6 2.5033 2.5379 -5.9937 19 6 1.4516 3.6508 -6.0071 20 6 1.4265 4.3349 -4.6376 21 1 2.3946 4.7962 -4.4426 22 6 0.3531 5.3926 -4.6232 23 7 -0.9174 5.2009 -4.8254 24 7 -1.5415 6.3224 -4.7364 25 6 -0.6813 7.2780 -4.4813 26 7 -0.9710 8.6204 -4.3207 27 8 0.5360 6.7095 -4.4043 28 6 1.1307 3.2920 -3.5572 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6878 2.0284 35 1 2.0954 3.1410 1.1384 36 1 5.7175 2.5741 4.0831 37 1 2.6977 0.4834 -2.5802 38 1 0.9737 0.9155 -2.4829 39 1 2.9313 0.7612 -4.8526 40 1 1.1967 1.1047 -5.0552 41 1 2.4964 2.0190 -6.9522 42 1 3.4888 2.9705 -5.8212 43 1 0.4716 3.2232 -6.2189 44 1 1.7037 4.3821 -6.7750 45 1 -0.2585 9.2513 -4.1328 46 1 -1.8867 8.9314 -4.3960 47 1 0.1560 2.8415 -3.7445 48 1 1.1262 3.7736 -2.5793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414018728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:40 Heat of formation + Delta-G solvation = -12.678843 kcal Electronic energy + Delta-G solvation = -30160.614009 eV Core-core repulsion = 26058.591751 eV Total energy + Delta-G solvation = -4102.022257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.12970 -41.10598 -39.59684 -37.17861 -36.94394 -36.37734 -35.06615 -34.67903 -32.73131 -31.86925 -30.17699 -29.65567 -28.15101 -25.59259 -24.88832 -24.31652 -24.21999 -23.44846 -22.89145 -20.72898 -19.84157 -19.18961 -19.09794 -18.44486 -18.04341 -17.95830 -17.60438 -17.07024 -16.66142 -16.53915 -16.00445 -15.61077 -15.55056 -14.98616 -14.86535 -14.70311 -14.49118 -14.39365 -13.97954 -13.77668 -13.53440 -13.46033 -13.31674 -13.19254 -12.92653 -12.90287 -12.71867 -12.54951 -12.50604 -12.39744 -12.04493 -11.96639 -11.90490 -11.75470 -11.69702 -11.61675 -11.49477 -10.83572 -10.52284 -9.47643 -9.40196 -9.22891 -8.34257 -6.38292 0.29565 0.77003 1.29918 1.33667 1.41948 1.42126 1.86169 2.19855 2.29415 2.38495 2.98535 3.00410 3.29654 3.63245 3.69082 3.80673 3.95832 4.04917 4.12025 4.20282 4.24943 4.27005 4.29641 4.43058 4.45981 4.50332 4.63148 4.63723 4.66218 4.80891 4.82646 4.89776 4.94204 4.98714 5.00038 5.00865 5.12283 5.16910 5.37689 5.44789 5.47296 5.67882 5.77479 5.90214 6.14285 6.26173 6.36577 6.63043 6.77405 7.22708 7.41285 7.50470 8.82769 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.003336 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.327651 B = 8390.829843 C = 9768.278471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.031 0.969 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.241 1.241 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.576 6.576 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.050 3.950 18 C -0.108 4.108 19 C -0.102 4.102 20 C 0.024 3.976 21 H 0.098 0.902 22 C 0.149 3.851 23 N -0.276 5.276 24 N -0.381 5.381 25 C 0.420 3.580 26 N -0.767 5.767 27 O -0.255 6.255 28 C 0.077 3.923 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.012 0.988 36 H 0.268 0.732 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.433 0.567 46 H 0.446 0.554 47 H 0.047 0.953 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 2.622 -20.387 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.570 4.570 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.165 1.165 12 H -0.198 1.198 13 C 0.284 3.716 14 O -0.456 6.456 15 C -0.078 4.078 16 N -0.263 5.263 17 C -0.076 4.076 18 C -0.146 4.146 19 C -0.140 4.140 20 C 0.003 3.997 21 H 0.117 0.883 22 C -0.067 4.067 23 N -0.120 5.120 24 N -0.239 5.239 25 C 0.116 3.884 26 N -0.334 5.334 27 O -0.136 6.136 28 C -0.052 4.052 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.267 0.733 46 H 0.284 0.716 47 H 0.065 0.935 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.234 2.790 -20.435 25.059 hybrid contribution 0.513 1.537 1.453 2.176 sum -13.721 4.326 -18.982 23.818 Atomic orbital electron populations 1.22162 0.94356 1.03611 1.01738 1.21762 0.95273 0.81173 1.04114 1.48090 1.64530 1.15273 1.05755 1.19217 0.94760 0.92724 0.82719 1.21561 0.97014 1.31896 1.06549 0.95078 1.25804 0.96638 0.97186 0.98953 1.70048 1.17275 1.46643 1.24497 0.85767 0.80465 0.79014 0.78011 1.20431 1.16474 1.19789 1.21272 0.77150 0.86802 0.86371 1.90622 1.46736 1.20457 1.87752 1.21995 1.03594 0.94904 0.87305 1.61380 1.48370 1.13314 1.03263 1.22339 1.01891 0.96620 0.86785 1.21587 0.98542 0.95542 0.98890 1.21645 1.01239 0.98458 0.92656 1.19683 0.92578 0.88724 0.98685 0.88344 1.27592 0.95939 0.80346 1.02858 1.73953 1.02951 1.18493 1.16630 1.74751 1.25226 0.94287 1.29586 1.23735 0.78746 0.91394 0.94530 1.40885 1.15225 0.97789 1.79517 1.84774 1.33435 1.23157 1.72202 1.21872 0.92810 0.92719 0.97804 0.92444 0.88590 0.93791 0.88282 0.90913 0.93766 0.96967 0.92302 0.85661 0.89514 0.88674 0.92964 0.87660 0.91229 0.90595 0.90238 0.73332 0.71581 0.93528 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.18 71.98 0.73 -2.88 16 2 C 0.10 2.86 5.85 86.38 0.50 3.36 16 3 N -0.60 -24.61 2.46 -826.16 -2.03 -26.64 16 4 C 0.23 11.38 4.23 85.63 0.36 11.74 16 5 C -0.53 -31.72 9.94 25.60 0.25 -31.47 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 7 C 0.01 0.73 5.47 84.65 0.46 1.19 16 8 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 9 Si 0.94 45.45 27.47 68.60 1.88 47.33 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 C 0.50 20.12 7.20 87.66 0.63 20.75 16 14 O -0.58 -29.28 14.29 -3.05 -0.04 -29.32 16 15 C 0.05 1.43 3.91 85.56 0.33 1.77 16 16 N -0.54 -14.48 4.35 -900.89 -3.92 -18.40 16 17 C 0.05 0.88 5.46 86.33 0.47 1.35 16 18 C -0.11 -1.64 6.09 30.65 0.19 -1.46 16 19 C -0.10 -1.85 5.27 30.67 0.16 -1.69 16 20 C 0.02 0.61 2.82 -11.49 -0.03 0.58 16 21 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 22 C 0.15 4.25 6.99 88.37 0.62 4.87 16 23 N -0.28 -8.44 12.20 -165.26 -2.02 -10.46 16 24 N -0.38 -11.08 12.26 -173.50 -2.13 -13.20 16 25 C 0.42 10.02 9.72 179.04 1.74 11.77 16 26 N -0.77 -9.28 9.06 -169.64 -1.54 -10.82 16 27 O -0.26 -7.05 10.90 -9.60 -0.10 -7.15 16 28 C 0.08 2.23 4.38 86.33 0.38 2.61 16 29 H 0.06 1.23 7.12 -2.39 -0.02 1.21 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 2.20 6.61 -2.39 -0.02 2.19 16 33 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.04 2.05 7.13 -2.39 -0.02 2.03 16 35 H 0.01 0.66 6.85 -2.39 -0.02 0.65 16 36 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 37 H 0.13 2.87 7.55 -2.38 -0.02 2.85 16 38 H 0.09 1.89 6.83 -2.39 -0.02 1.87 16 39 H 0.09 1.41 8.01 -2.38 -0.02 1.39 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.43 2.97 8.95 -92.71 -0.83 2.14 16 46 H 0.45 3.19 8.95 -92.71 -0.83 2.36 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 1.98 6.06 -2.39 -0.01 1.97 16 Total: -1.00 -87.00 386.99 -3.50 -90.50 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.72 Total: 15.72 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 6.81 Total: 22.48 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -11.33 Total: -139.56 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.15 Total: -36.47 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -87.00 -3.50 -90.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414018728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.818 kcal (2) G-P(sol) polarization free energy of solvation -86.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds