Wall clock time and date at job start Tue Mar 31 2020 20:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46954 * 2 1 4 4 C 1.46510 * 119.99817 * 90.00523 * 3 2 1 5 5 C 1.50697 * 109.47303 * 89.99614 * 4 3 2 6 6 H 1.08006 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99987 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47075 * 60.00205 * 9 7 5 11 11 H 1.48498 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46998 * 299.99880 * 9 7 5 13 13 C 1.34775 * 120.00386 * 270.00176 * 3 2 1 14 14 O 1.21282 * 120.00326 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99769 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47173 * 173.74803 * 15 13 3 17 17 C 1.46840 * 111.00063 * 169.39791 * 16 15 13 18 18 C 1.53037 * 109.52624 * 185.83892 * 17 16 15 19 19 C 1.53118 * 109.27794 * 300.82452 * 18 17 16 20 20 C 1.50703 * 109.57609 * 177.58818 * 19 18 17 21 21 N 1.30063 * 126.21165 * 300.30948 * 20 19 18 22 22 N 1.28658 * 109.54621 * 179.97438 * 21 20 19 23 23 C 1.31068 * 109.31338 * 359.97438 * 22 21 20 24 24 N 1.38254 * 126.36765 * 180.02562 * 23 22 21 25 25 O 1.34584 * 107.25875 * 359.77985 * 23 22 21 26 26 C 1.53119 * 109.16223 * 57.65181 * 19 18 17 27 27 C 1.46847 * 110.99751 * 293.61157 * 16 15 13 28 28 H 1.08992 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 299.99491 * 1 2 3 30 30 H 1.08996 * 109.47104 * 59.99686 * 1 2 3 31 31 H 1.08999 * 109.46965 * 240.00509 * 2 1 3 32 32 H 1.08996 * 109.47104 * 120.00314 * 2 1 3 33 33 H 1.09004 * 109.46969 * 209.99954 * 4 3 2 34 34 H 1.09002 * 109.46728 * 329.99595 * 4 3 2 35 35 H 0.96998 * 120.00236 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46806 * 293.74507 * 15 13 3 37 37 H 1.08997 * 109.47347 * 53.75003 * 15 13 3 38 38 H 1.09001 * 109.46347 * 305.85916 * 17 16 15 39 39 H 1.09002 * 109.46193 * 65.82383 * 17 16 15 40 40 H 1.08997 * 109.50548 * 180.88357 * 18 17 16 41 41 H 1.09000 * 109.53381 * 60.77822 * 18 17 16 42 42 H 1.08997 * 109.52543 * 297.74812 * 19 18 17 43 43 H 0.96994 * 120.00399 * 0.02562 * 24 23 22 44 44 H 0.97009 * 119.99789 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.50539 * 182.40697 * 26 19 18 46 46 H 1.08999 * 109.53840 * 62.30364 * 26 19 18 47 47 H 1.08998 * 109.46451 * 294.17150 * 27 16 15 48 48 H 1.08994 * 109.46498 * 54.15556 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8350 1.7038 6 1 4.3430 1.2308 1.0958 7 6 4.1495 2.3904 2.8775 8 7 3.3498 3.1273 3.6172 9 14 5.9140 2.0974 3.4163 10 1 6.8411 2.6207 2.3810 11 1 6.1615 2.7972 4.7024 12 1 6.1418 0.6408 3.5942 13 6 2.2430 2.0167 -1.1671 14 8 2.6476 3.1600 -1.1671 15 6 1.9912 1.3065 -2.4723 16 7 2.1649 2.2501 -3.5847 17 6 2.1764 1.5474 -4.8739 18 6 2.5034 2.5380 -5.9936 19 6 1.4519 3.6509 -6.0070 20 6 1.8003 4.6622 -7.0687 21 7 2.8943 5.3627 -7.1331 22 7 2.8573 6.1243 -8.1694 23 6 1.7285 5.9335 -8.8076 24 7 1.3249 6.5689 -9.9672 25 8 1.0380 5.0000 -8.1270 26 6 1.4266 4.3351 -4.6374 27 6 1.1307 3.2922 -3.5570 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0956 3.1411 1.1385 34 1 1.5818 1.6876 2.0285 35 1 3.6759 3.5177 4.4431 36 1 2.6978 0.4836 -2.5802 37 1 0.9738 0.9156 -2.4829 38 1 2.9313 0.7614 -4.8525 39 1 1.1968 1.1050 -5.0551 40 1 2.4964 2.0192 -6.9522 41 1 3.4889 2.9707 -5.8211 42 1 0.4718 3.2236 -6.2187 43 1 1.9012 7.2276 -10.3851 44 1 0.4652 6.3558 -10.3629 45 1 0.6503 5.1001 -4.6270 46 1 2.3948 4.7964 -4.4424 47 1 0.1560 2.8418 -3.7444 48 1 1.1263 3.7737 -2.5792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422010990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:17 Heat of formation + Delta-G solvation = 17.461608 kcal Electronic energy + Delta-G solvation = -29518.831813 eV Core-core repulsion = 25418.116544 eV Total energy + Delta-G solvation = -4100.715269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.20805 -39.70178 -38.30995 -36.23142 -35.72228 -35.20097 -34.06263 -32.72233 -30.94971 -30.08853 -29.78428 -28.02849 -26.39455 -24.49650 -23.38293 -23.27344 -22.98085 -22.51182 -21.78417 -19.83793 -18.43247 -18.26644 -17.51696 -17.35811 -16.67449 -16.50799 -16.26461 -15.96035 -15.27734 -15.12724 -14.63692 -14.41805 -14.19420 -13.77287 -13.68884 -13.37216 -13.22997 -12.86925 -12.57328 -12.50084 -12.25127 -11.99616 -11.94132 -11.87761 -11.66146 -11.55892 -11.36299 -11.22412 -11.14754 -10.93775 -10.86310 -10.72111 -10.68323 -10.56999 -10.46593 -10.07313 -9.58110 -8.82544 -8.65347 -8.37867 -8.13509 -7.58308 -5.99028 -4.03325 1.20917 1.54404 2.40321 3.14835 3.36324 3.40843 3.43420 3.52055 3.64475 4.15489 4.20652 4.49815 4.52452 4.61398 4.77926 4.89599 5.02234 5.08684 5.17323 5.24466 5.26862 5.35032 5.36327 5.39115 5.47332 5.52795 5.57388 5.64698 5.70396 5.73201 5.79794 5.83442 6.02683 6.08865 6.16382 6.24722 6.34511 6.38494 6.48008 6.79122 6.96428 7.16009 7.20277 7.50155 7.62013 7.97985 8.29536 8.35218 8.50062 8.96837 9.20201 9.61819 11.08948 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002337 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.039911 B =11977.122436 C =12898.348701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.505 3.495 14 O -0.520 6.520 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.060 3.940 18 C -0.106 4.106 19 C 0.017 3.983 20 C 0.151 3.849 21 N -0.251 5.251 22 N -0.345 5.345 23 C 0.413 3.587 24 N -0.798 5.798 25 O -0.250 6.250 26 C -0.104 4.104 27 C 0.058 3.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.434 0.566 44 H 0.417 0.583 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.028 0.972 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 -2.828 -25.181 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.396 6.396 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.068 4.068 18 C -0.144 4.144 19 C -0.004 4.004 20 C -0.064 4.064 21 N -0.094 5.094 22 N -0.202 5.202 23 C 0.110 3.890 24 N -0.361 5.361 25 O -0.131 6.131 26 C -0.143 4.143 27 C -0.070 4.070 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.270 0.730 44 H 0.248 0.752 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.046 0.954 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.780 -1.443 -24.542 26.105 hybrid contribution -1.231 -0.854 -0.536 1.591 sum -10.011 -2.297 -25.078 27.100 Atomic orbital electron populations 1.22224 0.96995 1.01288 1.02192 1.21381 0.93321 0.84449 1.02562 1.48278 1.64196 1.13189 1.07738 1.19227 0.96150 0.93579 0.78096 1.21405 0.96957 1.31799 1.06136 0.92528 1.24931 0.97789 0.94960 0.96457 1.69921 1.35727 1.33478 1.14399 0.86572 0.84965 0.78164 0.77801 1.20109 1.21260 1.20326 1.20138 0.78965 0.87211 0.84679 1.90671 1.44338 1.17794 1.86762 1.22068 1.01076 0.95323 0.90830 1.61498 1.48898 1.12798 1.01158 1.22069 1.00336 0.95777 0.88624 1.21660 0.99714 0.94901 0.98157 1.19830 1.00817 0.90774 0.88956 1.27510 0.87480 1.01889 0.89472 1.74140 1.18694 1.04641 1.11964 1.74922 1.16099 1.23771 1.05386 1.23370 0.87497 0.87757 0.90414 1.40737 1.25232 1.46968 1.23149 1.84740 1.46319 1.47627 1.34383 1.21655 1.04469 0.97703 0.90447 1.22176 0.91079 0.92726 1.01006 0.92275 0.92031 0.93283 0.91939 0.89984 0.93969 0.95192 0.92737 0.88372 0.92690 0.89904 0.94811 0.91165 0.89113 0.88846 0.73049 0.75175 0.91207 0.88958 0.95394 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.18 37.16 0.38 -1.78 16 2 C 0.11 1.66 5.85 -4.04 -0.02 1.63 16 3 N -0.60 -12.40 2.46 -175.05 -0.43 -12.83 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.50 10.23 7.20 -10.99 -0.08 10.15 16 14 O -0.52 -12.91 14.29 5.56 0.08 -12.83 16 15 C 0.04 0.55 3.91 -4.97 -0.02 0.53 16 16 N -0.52 -7.30 4.35 -236.12 -1.03 -8.33 16 17 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 18 C -0.11 -1.08 5.36 -26.65 -0.14 -1.22 16 19 C 0.02 0.17 2.72 -91.65 -0.25 -0.08 16 20 C 0.15 1.85 6.99 -13.03 -0.09 1.76 16 21 N -0.25 -3.68 12.20 32.59 0.40 -3.28 16 22 N -0.34 -4.72 12.26 29.86 0.37 -4.36 16 23 C 0.41 4.28 9.72 -86.89 -0.84 3.44 16 24 N -0.80 -3.94 9.06 29.86 0.27 -3.67 16 25 O -0.25 -2.77 10.90 3.73 0.04 -2.73 16 26 C -0.10 -1.29 5.36 -26.65 -0.14 -1.43 16 27 C 0.06 0.78 5.12 -3.83 -0.02 0.76 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16 31 H 0.06 0.79 6.61 -51.93 -0.34 0.45 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.10 1.27 7.55 -51.93 -0.39 0.88 16 37 H 0.06 0.67 6.83 -51.93 -0.35 0.32 16 38 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.43 1.31 8.95 -40.82 -0.37 0.95 16 44 H 0.42 0.88 8.95 -40.82 -0.37 0.52 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 1.71 6.06 -51.93 -0.31 1.39 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -36.74 390.60 -7.90 -44.64 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.49 Total: -0.76 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.70 Total: 7.19 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.31 Total: -58.56 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.12 Total: -15.56 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.74 -7.90 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422010990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.100 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds