Wall clock time and date at job start Tue Mar 31 2020 20:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46954 * 2 1 4 4 C 1.46510 * 119.99817 * 90.00523 * 3 2 1 5 5 C 1.50697 * 109.47303 * 89.99614 * 4 3 2 6 6 H 1.08006 * 119.99995 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99987 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47075 * 60.00205 * 9 7 5 11 11 H 1.48498 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46998 * 299.99880 * 9 7 5 13 13 C 1.34775 * 120.00386 * 270.00176 * 3 2 1 14 14 O 1.21282 * 120.00326 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99769 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47173 * 173.74803 * 15 13 3 17 17 C 1.46840 * 111.00063 * 169.39791 * 16 15 13 18 18 C 1.53037 * 109.52624 * 185.83892 * 17 16 15 19 19 C 1.53118 * 109.27794 * 300.82452 * 18 17 16 20 20 C 1.50703 * 109.57609 * 177.58818 * 19 18 17 21 21 N 1.30063 * 126.21165 * 300.30948 * 20 19 18 22 22 N 1.28658 * 109.54621 * 179.97438 * 21 20 19 23 23 C 1.31068 * 109.31338 * 359.97438 * 22 21 20 24 24 N 1.38254 * 126.36765 * 180.02562 * 23 22 21 25 25 O 1.34584 * 107.25875 * 359.77985 * 23 22 21 26 26 C 1.53119 * 109.16223 * 57.65181 * 19 18 17 27 27 C 1.46847 * 110.99751 * 293.61157 * 16 15 13 28 28 H 1.08992 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 299.99491 * 1 2 3 30 30 H 1.08996 * 109.47104 * 59.99686 * 1 2 3 31 31 H 1.08999 * 109.46965 * 240.00509 * 2 1 3 32 32 H 1.08996 * 109.47104 * 120.00314 * 2 1 3 33 33 H 1.09004 * 109.46969 * 209.99954 * 4 3 2 34 34 H 1.09002 * 109.46728 * 329.99595 * 4 3 2 35 35 H 0.96998 * 120.00236 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46806 * 293.74507 * 15 13 3 37 37 H 1.08997 * 109.47347 * 53.75003 * 15 13 3 38 38 H 1.09001 * 109.46347 * 305.85916 * 17 16 15 39 39 H 1.09002 * 109.46193 * 65.82383 * 17 16 15 40 40 H 1.08997 * 109.50548 * 180.88357 * 18 17 16 41 41 H 1.09000 * 109.53381 * 60.77822 * 18 17 16 42 42 H 1.08997 * 109.52543 * 297.74812 * 19 18 17 43 43 H 0.96994 * 120.00399 * 0.02562 * 24 23 22 44 44 H 0.97009 * 119.99789 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.50539 * 182.40697 * 26 19 18 46 46 H 1.08999 * 109.53840 * 62.30364 * 26 19 18 47 47 H 1.08998 * 109.46451 * 294.17150 * 27 16 15 48 48 H 1.08994 * 109.46498 * 54.15556 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8350 1.7038 6 1 4.3430 1.2308 1.0958 7 6 4.1495 2.3904 2.8775 8 7 3.3498 3.1273 3.6172 9 14 5.9140 2.0974 3.4163 10 1 6.8411 2.6207 2.3810 11 1 6.1615 2.7972 4.7024 12 1 6.1418 0.6408 3.5942 13 6 2.2430 2.0167 -1.1671 14 8 2.6476 3.1600 -1.1671 15 6 1.9912 1.3065 -2.4723 16 7 2.1649 2.2501 -3.5847 17 6 2.1764 1.5474 -4.8739 18 6 2.5034 2.5380 -5.9936 19 6 1.4519 3.6509 -6.0070 20 6 1.8003 4.6622 -7.0687 21 7 2.8943 5.3627 -7.1331 22 7 2.8573 6.1243 -8.1694 23 6 1.7285 5.9335 -8.8076 24 7 1.3249 6.5689 -9.9672 25 8 1.0380 5.0000 -8.1270 26 6 1.4266 4.3351 -4.6374 27 6 1.1307 3.2922 -3.5570 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0956 3.1411 1.1385 34 1 1.5818 1.6876 2.0285 35 1 3.6759 3.5177 4.4431 36 1 2.6978 0.4836 -2.5802 37 1 0.9738 0.9156 -2.4829 38 1 2.9313 0.7614 -4.8525 39 1 1.1968 1.1050 -5.0551 40 1 2.4964 2.0192 -6.9522 41 1 3.4889 2.9707 -5.8211 42 1 0.4718 3.2236 -6.2187 43 1 1.9012 7.2276 -10.3851 44 1 0.4652 6.3558 -10.3629 45 1 0.6503 5.1001 -4.6270 46 1 2.3948 4.7964 -4.4424 47 1 0.1560 2.8418 -3.7444 48 1 1.1263 3.7737 -2.5792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422010990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:15 Heat of formation + Delta-G solvation = -15.222749 kcal Electronic energy + Delta-G solvation = -29520.249113 eV Core-core repulsion = 25418.116544 eV Total energy + Delta-G solvation = -4102.132569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.07109 -40.99651 -39.54024 -37.12114 -36.87075 -36.35613 -35.11973 -34.73578 -31.85926 -31.58458 -30.77997 -29.47877 -27.89692 -25.71214 -24.60818 -24.26094 -24.13709 -23.78629 -22.88787 -20.71993 -19.80034 -19.14579 -18.58424 -18.38647 -18.00124 -17.80521 -17.46071 -17.23763 -16.61951 -16.43258 -16.02774 -15.60507 -15.46181 -15.01573 -14.70402 -14.58198 -14.37110 -14.23891 -13.98471 -13.55762 -13.46944 -13.27634 -13.10388 -13.09642 -12.85440 -12.80105 -12.64202 -12.55773 -12.47514 -12.35737 -12.14692 -12.10947 -11.88195 -11.74205 -11.70363 -11.57520 -11.48864 -10.61833 -10.41107 -9.43096 -9.36073 -9.10345 -8.19570 -6.34009 0.37114 0.79600 1.36732 1.41848 1.48576 1.50785 1.97027 2.29153 2.43844 2.45643 3.03427 3.09571 3.36010 3.69787 3.72241 3.83897 3.92863 4.13399 4.16870 4.24819 4.29808 4.33301 4.37145 4.45644 4.50250 4.53346 4.61705 4.66496 4.70339 4.83791 4.87308 4.97872 5.00839 5.04131 5.10130 5.11513 5.19253 5.26623 5.39974 5.43428 5.62341 5.83231 5.91397 6.05339 6.11280 6.26478 6.42094 6.74928 6.92624 7.32690 7.50742 7.64144 8.86836 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002337 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.039911 B =11977.122436 C =12898.348701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.493 3.507 14 O -0.580 6.580 15 C 0.055 3.945 16 N -0.550 5.550 17 C 0.063 3.937 18 C -0.102 4.102 19 C 0.025 3.975 20 C 0.152 3.848 21 N -0.291 5.291 22 N -0.389 5.389 23 C 0.421 3.579 24 N -0.767 5.767 25 O -0.248 6.248 26 C -0.098 4.098 27 C 0.064 3.936 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.068 0.932 33 H -0.007 1.007 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.444 0.556 44 H 0.434 0.566 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -5.670 -27.888 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.183 1.183 13 C 0.281 3.719 14 O -0.460 6.460 15 C -0.076 4.076 16 N -0.276 5.276 17 C -0.063 4.063 18 C -0.140 4.140 19 C 0.005 3.995 20 C -0.064 4.064 21 N -0.134 5.134 22 N -0.247 5.247 23 C 0.116 3.884 24 N -0.334 5.334 25 O -0.128 6.128 26 C -0.137 4.137 27 C -0.064 4.064 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.011 0.989 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.145 0.855 43 H 0.282 0.718 44 H 0.268 0.732 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.997 -4.322 -27.307 29.399 hybrid contribution -0.925 0.113 0.222 0.958 sum -10.922 -4.210 -27.085 29.506 Atomic orbital electron populations 1.22148 0.94685 1.03406 1.01542 1.21729 0.95192 0.81407 1.03891 1.48309 1.64389 1.15144 1.06148 1.18617 0.95012 0.91362 0.80641 1.21704 0.98015 1.31754 1.06311 0.92909 1.25864 1.02305 0.94600 0.96586 1.70047 1.37777 1.34298 1.14836 0.85501 0.79186 0.79081 0.77245 1.20570 1.20430 1.18265 1.21335 0.77365 0.86763 0.86397 1.90645 1.46884 1.20658 1.87772 1.21964 1.03584 0.94785 0.87224 1.61380 1.49806 1.13585 1.02784 1.22158 1.02523 0.95518 0.86131 1.21631 0.97956 0.94884 0.99533 1.19861 1.02586 0.90188 0.86893 1.27742 0.87048 1.01709 0.89888 1.74062 1.20425 1.05836 1.13039 1.74806 1.18178 1.25344 1.06341 1.23694 0.86739 0.87038 0.90887 1.40871 1.25950 1.45674 1.20918 1.84738 1.45985 1.47866 1.34231 1.21514 1.02507 0.97781 0.91868 1.22000 0.92581 0.92909 0.98861 0.88642 0.94614 0.92059 0.87933 0.91301 0.98916 0.96251 0.92521 0.86005 0.89184 0.88641 0.91549 0.88624 0.92214 0.85509 0.71774 0.73177 0.90593 0.92837 0.92312 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.18 71.98 0.73 -2.97 16 2 C 0.10 2.91 5.85 86.38 0.50 3.42 16 3 N -0.61 -25.50 2.46 -826.12 -2.03 -27.53 16 4 C 0.27 14.56 5.16 85.63 0.44 15.00 16 5 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 9 Si 0.97 46.20 29.54 68.60 2.03 48.22 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.49 20.31 7.20 87.66 0.63 20.94 16 14 O -0.58 -30.65 14.29 -3.04 -0.04 -30.69 16 15 C 0.05 1.45 3.91 85.56 0.33 1.78 16 16 N -0.55 -14.63 4.35 -900.94 -3.92 -18.54 16 17 C 0.06 1.07 5.46 86.33 0.47 1.55 16 18 C -0.10 -1.86 5.36 30.65 0.16 -1.69 16 19 C 0.02 0.47 2.72 -11.46 -0.03 0.44 16 20 C 0.15 3.62 6.99 88.37 0.62 4.23 16 21 N -0.29 -8.76 12.20 -165.28 -2.02 -10.78 16 22 N -0.39 -10.77 12.26 -173.50 -2.13 -12.90 16 23 C 0.42 8.21 9.72 179.04 1.74 9.95 16 24 N -0.77 -5.87 9.06 -169.65 -1.54 -7.40 16 25 O -0.25 -5.05 10.90 -9.57 -0.10 -5.15 16 26 C -0.10 -2.46 5.36 30.65 0.16 -2.30 16 27 C 0.06 1.71 5.12 86.33 0.44 2.15 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.27 7.12 -2.39 -0.02 1.26 16 31 H 0.10 2.18 6.61 -2.39 -0.02 2.16 16 32 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 33 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 34 H 0.02 1.08 8.07 -2.39 -0.02 1.07 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.12 2.66 7.55 -2.39 -0.02 2.65 16 37 H 0.09 1.77 6.83 -2.39 -0.02 1.75 16 38 H 0.10 1.41 8.01 -2.39 -0.02 1.39 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.44 1.76 8.95 -92.71 -0.83 0.93 16 44 H 0.43 0.56 8.95 -92.70 -0.83 -0.27 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.06 2.00 6.06 -2.39 -0.01 1.99 16 Total: -1.00 -88.39 390.60 -3.21 -91.60 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -0.66 Total: 8.76 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 6.92 Total: 21.75 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -11.34 Total: -134.49 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.15 Total: -35.84 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -88.39 -3.21 -91.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422010990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.373 kcal (2) G-P(sol) polarization free energy of solvation -88.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds