Wall clock time and date at job start Tue Mar 31 2020 20:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.46501 * 120.00213 * 270.00210 * 3 2 1 5 5 C 1.50704 * 109.47333 * 269.99986 * 4 3 2 6 6 H 1.07996 * 119.99424 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46707 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47166 * 119.99649 * 9 7 5 12 12 H 1.48495 * 109.46962 * 240.00019 * 9 7 5 13 13 C 1.34773 * 120.00347 * 90.00198 * 3 2 1 14 14 O 1.21280 * 120.00526 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99877 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47638 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00067 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46578 * 179.97438 * 17 16 15 19 19 H 1.08998 * 109.47387 * 294.99727 * 18 17 16 20 20 C 1.53001 * 109.46863 * 174.99935 * 18 17 16 21 21 N 1.46499 * 109.47538 * 55.00102 * 18 17 16 22 22 C 1.34773 * 120.00135 * 204.99944 * 21 18 17 23 23 O 1.21605 * 119.99825 * 359.97438 * 22 21 18 24 24 C 1.47425 * 119.99866 * 179.97438 * 22 21 18 25 25 C 1.41288 * 126.41660 * 0.02669 * 24 22 21 26 26 N 1.30449 * 108.02633 * 179.71701 * 25 24 22 27 27 N 1.39939 * 108.89553 * 0.40857 * 26 25 24 28 28 H 0.97001 * 125.75870 * 179.85304 * 27 26 25 29 29 C 1.34266 * 108.48792 * 359.57838 * 27 26 25 30 30 H 1.08998 * 109.47078 * 299.99874 * 1 2 3 31 31 H 1.08999 * 109.47552 * 59.99718 * 1 2 3 32 32 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47206 * 240.00453 * 2 1 3 34 34 H 1.08999 * 109.47552 * 120.00282 * 2 1 3 35 35 H 1.09006 * 109.47116 * 29.99762 * 4 3 2 36 36 H 1.09001 * 109.47650 * 149.99847 * 4 3 2 37 37 H 0.97000 * 120.00429 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47300 * 59.99805 * 15 13 3 39 39 H 1.09008 * 109.46995 * 300.00644 * 15 13 3 40 40 H 1.00899 * 110.99428 * 303.95546 * 16 15 13 41 41 H 1.08996 * 109.47323 * 59.99846 * 17 16 15 42 42 H 1.09001 * 109.46864 * 299.99555 * 17 16 15 43 43 H 1.08998 * 109.46949 * 300.00060 * 20 18 17 44 44 H 1.09006 * 109.46963 * 59.99698 * 20 18 17 45 45 H 1.09001 * 109.47176 * 179.97438 * 20 18 17 46 46 H 0.97000 * 119.99677 * 24.99764 * 21 18 17 47 47 H 1.08002 * 125.98882 * 359.95631 * 25 24 22 48 48 H 1.08002 * 126.29040 * 180.25994 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2309 -1.0959 7 6 4.1489 2.3897 -2.8780 8 7 3.3487 3.1250 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.6013 1.2425 -2.4159 11 1 5.9213 1.4171 -4.7373 12 1 6.6202 3.3981 -3.5258 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3060 2.4722 16 7 2.3100 2.2062 3.5889 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5119 6.0161 19 1 3.4857 2.7356 5.9945 20 6 2.0600 1.8695 7.3575 21 7 1.6567 3.7515 5.8487 22 6 2.1176 4.9027 6.3766 23 8 3.1662 4.9123 6.9923 24 6 1.3505 6.1503 6.2075 25 6 0.1233 6.2940 5.5223 26 7 -0.2376 7.5453 5.5988 27 7 0.7318 8.2534 6.3178 28 1 0.7086 9.2023 6.5177 29 6 1.6964 7.3967 6.6897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6877 -2.0284 36 1 2.0955 3.1411 -1.1384 37 1 3.6747 3.5155 -4.4445 38 1 2.6229 0.4187 2.5298 39 1 0.9445 1.0114 2.5302 40 1 3.2580 2.5449 3.5217 41 1 2.7093 0.6603 4.9543 42 1 1.0305 1.2519 4.9549 43 1 0.9935 1.6458 7.3791 44 1 2.6274 0.9471 7.4821 45 1 2.3038 2.5578 8.1668 46 1 0.8201 3.7437 5.3578 47 1 -0.4225 5.5054 5.0258 48 1 2.5805 7.6383 7.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422626495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:10 Heat of formation + Delta-G solvation = 1.694213 kcal Electronic energy + Delta-G solvation = -29022.210071 eV Core-core repulsion = 24920.811076 eV Total energy + Delta-G solvation = -4101.398995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51292 -39.47721 -39.01681 -36.75268 -35.26480 -34.17263 -32.77599 -32.26883 -31.17895 -30.09830 -29.94060 -28.29757 -26.51609 -24.36119 -23.47762 -22.99880 -22.16360 -22.08072 -21.04517 -20.13434 -18.86253 -18.35353 -16.80529 -16.53607 -16.31962 -16.07807 -15.58002 -15.38629 -15.26199 -14.78819 -14.64003 -14.38045 -14.14716 -14.05139 -13.64691 -13.59390 -13.32544 -13.09619 -12.97496 -12.53239 -12.47528 -12.23630 -12.05113 -11.91660 -11.76862 -11.44398 -11.35495 -11.17551 -11.02818 -10.88223 -10.73269 -10.53210 -10.12010 -10.08948 -9.88085 -9.60315 -9.18531 -8.92814 -8.85904 -8.42829 -8.35913 -7.63116 -6.03293 -4.07963 1.35561 2.00797 2.45935 3.23427 3.30028 3.37508 3.40439 3.45855 3.47947 3.72613 4.30039 4.44978 4.47772 4.60450 4.67963 4.95631 4.99545 5.10892 5.12992 5.19877 5.26556 5.31207 5.33830 5.43107 5.45677 5.50055 5.53053 5.57117 5.65935 5.80922 5.87343 5.99959 6.03046 6.13506 6.23303 6.47961 6.50826 6.82300 6.83479 7.13325 7.23353 7.36599 7.47987 7.58018 7.61135 7.93585 8.25164 8.31872 8.46224 8.92330 9.14618 9.57355 11.04711 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.002598 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.673197 B =10776.750363 C =11731.348850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.670 5.670 17 C 0.049 3.951 18 C 0.147 3.853 19 H 0.087 0.913 20 C -0.161 4.161 21 N -0.704 5.704 22 C 0.598 3.402 23 O -0.559 6.559 24 C -0.290 4.290 25 C 0.090 3.910 26 N -0.297 5.297 27 N -0.466 5.466 28 H 0.444 0.556 29 C 0.131 3.869 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.354 0.646 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.404 0.596 47 H 0.191 0.809 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -1.522 22.101 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.091 4.091 16 N -0.303 5.303 17 C -0.081 4.081 18 C 0.042 3.958 19 H 0.106 0.894 20 C -0.220 4.220 21 N -0.354 5.354 22 C 0.386 3.614 23 O -0.438 6.438 24 C -0.305 4.305 25 C -0.099 4.099 26 N -0.117 5.117 27 N -0.171 5.171 28 H 0.288 0.712 29 C -0.022 4.022 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.174 0.826 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.238 0.762 47 H 0.208 0.792 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.822 0.339 21.988 23.694 hybrid contribution 1.901 -0.993 -0.458 2.193 sum -6.921 -0.654 21.529 22.624 Atomic orbital electron populations 1.22219 0.96813 1.01311 1.02373 1.21395 0.93495 0.84342 1.02519 1.48251 1.64084 1.13167 1.07732 1.19247 0.96149 0.93663 0.78134 1.21467 0.96967 1.31782 1.06159 0.92545 1.24934 0.97800 0.94959 0.96437 1.69937 1.35557 1.33525 1.14317 0.86459 0.84726 0.78049 0.78270 1.19861 1.20994 1.20881 1.20174 0.78962 0.87106 0.84876 1.90689 1.45014 1.17703 1.86903 1.21910 1.02241 0.94347 0.90629 1.60113 1.33172 1.37217 0.99804 1.22317 1.01904 0.95083 0.88809 1.20910 0.97467 0.83705 0.93743 0.89444 1.22143 1.01772 1.00929 0.97136 1.45556 1.26442 1.07200 1.56245 1.17166 0.83945 0.82309 0.78004 1.90754 1.23637 1.86439 1.42982 1.20319 1.00873 0.94919 1.14372 1.24134 0.94465 0.94591 0.96673 1.77188 1.12558 1.06009 1.15990 1.46244 1.16856 1.11308 1.42666 0.71173 1.23042 0.93713 0.89351 0.96121 0.93040 0.92028 0.92273 0.90047 0.91954 0.95111 0.93911 0.92793 0.92978 0.88794 0.82629 0.93723 0.90347 0.92322 0.91674 0.91774 0.76153 0.79191 0.79276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.05 -0.02 1.61 16 3 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.50 10.11 7.71 -10.99 -0.08 10.02 16 14 O -0.53 -13.12 15.78 5.56 0.09 -13.03 16 15 C 0.04 0.57 4.72 -4.98 -0.02 0.54 16 16 N -0.67 -8.68 5.85 -115.05 -0.67 -9.36 16 17 C 0.05 0.44 5.24 -3.82 -0.02 0.42 16 18 C 0.15 1.43 2.81 -67.93 -0.19 1.24 16 19 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 20 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 21 N -0.70 -7.33 4.79 -54.88 -0.26 -7.59 16 22 C 0.60 7.52 7.78 -12.52 -0.10 7.42 16 23 O -0.56 -8.68 16.56 5.27 0.09 -8.60 16 24 C -0.29 -3.20 6.13 -105.07 -0.64 -3.85 16 25 C 0.09 0.93 11.50 -16.98 -0.20 0.74 16 26 N -0.30 -3.27 12.63 30.86 0.39 -2.88 16 27 N -0.47 -3.81 7.29 30.85 0.22 -3.58 16 28 H 0.44 2.02 8.96 -182.72 -1.64 0.39 16 29 C 0.13 1.17 11.82 -16.56 -0.20 0.97 16 30 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.05 0.64 7.40 -51.93 -0.38 0.26 16 39 H 0.09 1.10 7.19 -51.92 -0.37 0.72 16 40 H 0.35 5.29 8.43 -39.29 -0.33 4.96 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.40 3.64 7.56 -40.82 -0.31 3.33 16 47 H 0.19 1.49 7.50 -52.49 -0.39 1.09 16 48 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -37.67 405.90 -8.62 -46.28 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.68 Total: 5.12 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.19 Total: 9.28 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.02 Total: -62.11 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.67 -8.62 -46.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422626495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.979 kcal (2) G-P(sol) polarization free energy of solvation -37.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds