Wall clock time and date at job start Tue Mar 31 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.46501 * 120.00213 * 270.00210 * 3 2 1 5 5 C 1.50704 * 109.47333 * 269.99986 * 4 3 2 6 6 H 1.07996 * 119.99424 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46707 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47166 * 119.99649 * 9 7 5 12 12 H 1.48495 * 109.46962 * 240.00019 * 9 7 5 13 13 C 1.34773 * 120.00347 * 90.00198 * 3 2 1 14 14 O 1.21280 * 120.00526 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99877 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47638 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00067 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46578 * 179.97438 * 17 16 15 19 19 H 1.08998 * 109.47387 * 294.99727 * 18 17 16 20 20 C 1.53001 * 109.46863 * 174.99935 * 18 17 16 21 21 N 1.46499 * 109.47538 * 55.00102 * 18 17 16 22 22 C 1.34773 * 120.00135 * 204.99944 * 21 18 17 23 23 O 1.21605 * 119.99825 * 359.97438 * 22 21 18 24 24 C 1.47425 * 119.99866 * 179.97438 * 22 21 18 25 25 C 1.41288 * 126.41660 * 0.02669 * 24 22 21 26 26 N 1.30449 * 108.02633 * 179.71701 * 25 24 22 27 27 N 1.39939 * 108.89553 * 0.40857 * 26 25 24 28 28 H 0.97001 * 125.75870 * 179.85304 * 27 26 25 29 29 C 1.34266 * 108.48792 * 359.57838 * 27 26 25 30 30 H 1.08998 * 109.47078 * 299.99874 * 1 2 3 31 31 H 1.08999 * 109.47552 * 59.99718 * 1 2 3 32 32 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47206 * 240.00453 * 2 1 3 34 34 H 1.08999 * 109.47552 * 120.00282 * 2 1 3 35 35 H 1.09006 * 109.47116 * 29.99762 * 4 3 2 36 36 H 1.09001 * 109.47650 * 149.99847 * 4 3 2 37 37 H 0.97000 * 120.00429 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47300 * 59.99805 * 15 13 3 39 39 H 1.09008 * 109.46995 * 300.00644 * 15 13 3 40 40 H 1.00899 * 110.99428 * 303.95546 * 16 15 13 41 41 H 1.08996 * 109.47323 * 59.99846 * 17 16 15 42 42 H 1.09001 * 109.46864 * 299.99555 * 17 16 15 43 43 H 1.08998 * 109.46949 * 300.00060 * 20 18 17 44 44 H 1.09006 * 109.46963 * 59.99698 * 20 18 17 45 45 H 1.09001 * 109.47176 * 179.97438 * 20 18 17 46 46 H 0.97000 * 119.99677 * 24.99764 * 21 18 17 47 47 H 1.08002 * 125.98882 * 359.95631 * 25 24 22 48 48 H 1.08002 * 126.29040 * 180.25994 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2309 -1.0959 7 6 4.1489 2.3897 -2.8780 8 7 3.3487 3.1250 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.6013 1.2425 -2.4159 11 1 5.9213 1.4171 -4.7373 12 1 6.6202 3.3981 -3.5258 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3060 2.4722 16 7 2.3100 2.2062 3.5889 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5119 6.0161 19 1 3.4857 2.7356 5.9945 20 6 2.0600 1.8695 7.3575 21 7 1.6567 3.7515 5.8487 22 6 2.1176 4.9027 6.3766 23 8 3.1662 4.9123 6.9923 24 6 1.3505 6.1503 6.2075 25 6 0.1233 6.2940 5.5223 26 7 -0.2376 7.5453 5.5988 27 7 0.7318 8.2534 6.3178 28 1 0.7086 9.2023 6.5177 29 6 1.6964 7.3967 6.6897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6877 -2.0284 36 1 2.0955 3.1411 -1.1384 37 1 3.6747 3.5155 -4.4445 38 1 2.6229 0.4187 2.5298 39 1 0.9445 1.0114 2.5302 40 1 3.2580 2.5449 3.5217 41 1 2.7093 0.6603 4.9543 42 1 1.0305 1.2519 4.9549 43 1 0.9935 1.6458 7.3791 44 1 2.6274 0.9471 7.4821 45 1 2.3038 2.5578 8.1668 46 1 0.8201 3.7437 5.3578 47 1 -0.4225 5.5054 5.0258 48 1 2.5805 7.6383 7.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422626495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:09 Heat of formation + Delta-G solvation = -28.718007 kcal Electronic energy + Delta-G solvation = -29023.528844 eV Core-core repulsion = 24920.811076 eV Total energy + Delta-G solvation = -4102.717768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.27646 -40.71102 -40.22701 -37.73159 -36.84963 -35.26410 -34.80017 -33.06964 -32.01127 -31.56584 -30.73771 -29.72296 -27.99479 -25.55842 -24.60285 -24.25564 -23.52727 -22.93450 -21.82743 -20.97716 -19.90710 -19.57400 -18.61311 -17.97831 -17.49539 -17.19743 -16.96740 -16.50025 -16.29515 -16.14099 -15.52090 -15.46831 -15.26475 -15.03030 -14.85025 -14.67913 -14.60027 -14.21883 -14.17578 -13.75145 -13.55481 -13.29398 -13.25043 -13.11431 -12.99014 -12.82824 -12.69068 -12.63025 -12.44275 -12.16152 -12.13094 -11.84523 -11.75818 -11.67341 -10.85251 -10.83726 -10.64913 -10.51271 -10.06748 -9.66982 -9.38594 -9.32086 -8.21829 -6.36755 0.59475 1.18983 1.35234 1.38061 1.49392 1.81895 1.93628 2.28299 2.41283 2.46165 2.57782 3.07372 3.25309 3.71258 3.79008 3.90493 3.94197 4.15161 4.18773 4.27999 4.37694 4.42577 4.46408 4.49008 4.55156 4.68905 4.72611 4.75699 4.81902 4.89279 4.98259 5.04379 5.09438 5.14960 5.24828 5.35736 5.37243 5.44632 5.59967 5.68935 5.87737 6.01272 6.08476 6.23744 6.29048 6.49263 6.72491 6.77247 6.89517 7.30186 7.42894 7.58934 8.85075 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.002598 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.673197 B =10776.750363 C =11731.348850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.060 3.940 16 N -0.685 5.685 17 C 0.057 3.943 18 C 0.145 3.855 19 H 0.061 0.939 20 C -0.152 4.152 21 N -0.697 5.697 22 C 0.593 3.407 23 O -0.597 6.597 24 C -0.319 4.319 25 C 0.089 3.911 26 N -0.326 5.326 27 N -0.452 5.452 28 H 0.459 0.541 29 C 0.141 3.859 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.339 0.661 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.411 0.589 47 H 0.209 0.791 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -3.904 23.530 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.280 3.720 14 O -0.468 6.468 15 C -0.072 4.072 16 N -0.317 5.317 17 C -0.072 4.072 18 C 0.040 3.960 19 H 0.079 0.921 20 C -0.210 4.210 21 N -0.346 5.346 22 C 0.382 3.618 23 O -0.480 6.480 24 C -0.334 4.334 25 C -0.099 4.099 26 N -0.147 5.147 27 N -0.159 5.159 28 H 0.306 0.694 29 C -0.014 4.014 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.037 0.963 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.247 0.753 47 H 0.225 0.775 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.282 -2.098 23.427 25.286 hybrid contribution 1.989 -0.218 -0.886 2.188 sum -7.294 -2.316 22.541 23.805 Atomic orbital electron populations 1.22149 0.94534 1.03437 1.01725 1.21741 0.95337 0.81307 1.03845 1.48284 1.64228 1.15106 1.06171 1.18639 0.95080 0.91402 0.80690 1.21746 0.97952 1.31763 1.06360 0.92909 1.25866 1.02338 0.94556 0.96535 1.70059 1.37674 1.34359 1.14815 0.85377 0.79101 0.77940 0.78434 1.19043 1.19383 1.20960 1.21391 0.77281 0.86672 0.86626 1.90656 1.47619 1.20633 1.87926 1.21824 1.04585 0.93942 0.86842 1.60122 1.32257 1.38118 1.01193 1.22380 1.03773 0.94893 0.86180 1.20975 0.96013 0.83701 0.95298 0.92106 1.22056 1.03107 1.00851 0.95025 1.45558 1.26526 1.07058 1.55481 1.17428 0.83576 0.83214 0.77598 1.90722 1.25301 1.87064 1.44943 1.20416 1.01615 0.95203 1.16135 1.24437 0.94285 0.94885 0.96294 1.77129 1.13865 1.06492 1.17212 1.46258 1.16000 1.12012 1.41623 0.69353 1.23429 0.94005 0.88854 0.95083 0.91711 0.94699 0.88660 0.91408 0.87914 0.96275 0.98898 0.92481 0.90362 0.85530 0.84359 0.91784 0.87786 0.90584 0.90016 0.93787 0.75280 0.77486 0.77030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.61 -24.97 2.46 -826.16 -2.03 -27.00 16 4 C 0.26 14.33 5.16 85.63 0.44 14.77 16 5 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.01 13.29 21.44 0.28 -56.72 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 13 C 0.49 19.66 7.71 87.66 0.68 20.34 16 14 O -0.59 -30.43 15.78 -3.03 -0.05 -30.48 16 15 C 0.06 1.46 4.72 85.56 0.40 1.87 16 16 N -0.69 -16.49 5.85 -517.92 -3.03 -19.52 16 17 C 0.06 0.85 5.24 86.30 0.45 1.30 16 18 C 0.15 2.64 2.81 44.99 0.13 2.76 16 19 H 0.06 1.45 7.58 -2.39 -0.02 1.43 16 20 C -0.15 -2.12 9.48 71.98 0.68 -1.43 16 21 N -0.70 -14.06 4.79 -445.80 -2.14 -16.19 16 22 C 0.59 15.10 7.78 86.66 0.67 15.78 16 23 O -0.60 -19.12 16.56 -4.05 -0.07 -19.19 16 24 C -0.32 -7.04 6.13 -20.15 -0.12 -7.16 16 25 C 0.09 1.82 11.50 85.65 0.99 2.80 16 26 N -0.33 -7.05 12.63 -56.27 -0.71 -7.77 16 27 N -0.45 -7.07 7.29 -56.31 -0.41 -7.48 16 28 H 0.46 3.72 8.96 -213.42 -1.91 1.81 16 29 C 0.14 2.44 11.82 84.27 1.00 3.44 16 30 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 34 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 35 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 36 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.08 1.56 7.40 -2.39 -0.02 1.54 16 39 H 0.13 2.32 7.19 -2.38 -0.02 2.30 16 40 H 0.34 10.03 8.43 -89.69 -0.76 9.27 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.41 6.92 7.56 -92.71 -0.70 6.22 16 47 H 0.21 3.12 7.50 -2.91 -0.02 3.10 16 48 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -87.74 405.90 -1.22 -88.96 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -2.37 Total: 23.31 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 7.27 Total: 24.60 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -8.03 Total: -134.67 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.11 Total: -49.66 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -87.74 -1.22 -88.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422626495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.243 kcal (2) G-P(sol) polarization free energy of solvation -87.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds