Wall clock time and date at job start Tue Mar 31 2020 21:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00108 * 2 1 4 4 C 1.46898 * 111.00077 * 123.95196 * 2 1 3 5 5 C 1.53006 * 109.47112 * 66.04550 * 4 2 1 6 6 N 1.46497 * 109.47249 * 180.02562 * 5 4 2 7 7 C 1.35843 * 126.06054 * 125.28275 * 6 5 4 8 8 C 1.35726 * 107.56594 * 180.09980 * 7 6 5 9 9 N 1.40847 * 126.07649 * 179.89829 * 8 7 6 10 10 C 1.34781 * 119.99508 * 179.71630 * 9 8 7 11 11 O 1.21599 * 120.00529 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99219 * 179.97438 * 10 9 8 13 13 C 1.47014 * 125.65284 * 0.04827 * 12 10 9 14 14 C 1.54320 * 107.27380 * 181.02071 * 13 12 10 15 15 C 1.55152 * 102.94118 * 22.18831 * 14 13 12 16 16 O 1.42903 * 111.00434 * 82.57714 * 15 14 13 17 17 C 1.50704 * 111.04128 * 206.40570 * 15 14 13 18 18 H 1.08003 * 119.99340 * 356.80762 * 17 15 14 19 19 C 1.37871 * 120.00138 * 176.79441 * 17 15 14 20 20 N 1.31511 * 120.00128 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99837 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47246 * 90.00319 * 21 19 17 23 23 H 1.48500 * 109.47199 * 210.00072 * 21 19 17 24 24 H 1.48500 * 109.47318 * 330.00403 * 21 19 17 25 25 C 1.47430 * 125.64402 * 180.02562 * 12 10 9 26 26 C 1.40239 * 107.84630 * 359.64046 * 8 7 6 27 27 N 1.30838 * 108.34163 * 0.22312 * 26 8 7 28 28 H 1.08995 * 109.47086 * 296.04796 * 1 2 3 29 29 H 1.09005 * 109.46650 * 56.04511 * 1 2 3 30 30 H 1.09001 * 109.46805 * 176.04592 * 1 2 3 31 31 H 1.09005 * 109.47467 * 183.95324 * 3 2 1 32 32 H 1.09000 * 109.46978 * 303.95410 * 3 2 1 33 33 H 1.08997 * 109.47289 * 63.95027 * 3 2 1 34 34 H 1.09005 * 109.47178 * 306.04799 * 4 2 1 35 35 H 1.08993 * 109.47456 * 186.04557 * 4 2 1 36 36 H 1.08997 * 109.46737 * 59.99831 * 5 4 2 37 37 H 1.09002 * 109.47173 * 300.00486 * 5 4 2 38 38 H 1.08005 * 126.21524 * 359.97438 * 7 6 5 39 39 H 0.96998 * 119.99590 * 359.72122 * 9 8 7 40 40 H 1.09000 * 109.88210 * 300.43596 * 13 12 10 41 41 H 1.09006 * 109.88750 * 61.60163 * 13 12 10 42 42 H 1.09007 * 110.72261 * 263.83054 * 14 13 12 43 43 H 1.09000 * 110.72226 * 140.55729 * 14 13 12 44 44 H 0.96700 * 114.00311 * 186.35133 * 16 15 14 45 45 H 0.97002 * 119.99909 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.36336 * 37.07190 * 25 12 10 47 47 H 1.09002 * 110.45871 * 274.79672 * 25 12 10 48 48 H 1.07994 * 125.82809 * 180.18652 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1560 -3.0064 2.1052 7 6 1.4369 -3.8176 2.9238 8 6 2.2915 -4.3324 3.8441 9 7 1.9543 -5.2217 4.8829 10 6 2.9070 -5.6624 5.7284 11 8 4.0574 -5.2917 5.5947 12 7 2.5843 -6.5130 6.7228 13 6 1.2392 -7.0389 6.9978 14 6 1.3480 -7.9489 8.2394 15 6 2.6385 -7.4379 8.9327 16 8 2.3678 -6.2862 9.7342 17 6 3.2781 -8.5265 9.7554 18 1 2.7994 -9.4909 9.8406 19 6 4.4745 -8.2915 10.3992 20 7 5.0572 -7.1171 10.2957 21 14 5.2675 -9.6412 11.4184 22 1 6.1735 -10.4437 10.5580 23 1 6.0474 -9.0319 12.5256 24 1 4.2122 -10.5209 11.9819 25 6 3.5218 -7.0707 7.7145 26 6 3.5708 -3.8259 3.5732 27 7 3.4889 -3.0343 2.5347 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0658 -2.6213 0.0452 37 1 0.5472 -2.3475 0.9323 38 1 0.3773 -4.0154 2.8560 39 1 1.0366 -5.5171 4.9897 40 1 0.5537 -6.2160 7.2002 41 1 0.8855 -7.6173 6.1442 42 1 1.4562 -8.9927 7.9444 43 1 0.4832 -7.8186 8.8900 44 1 3.1577 -5.8734 10.1093 45 1 5.8988 -6.9516 10.7489 46 1 4.2647 -6.3243 7.9957 47 1 4.0105 -7.9609 7.3185 48 1 4.4700 -4.0504 4.1275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425952577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:11 Heat of formation + Delta-G solvation = 24.707636 kcal Electronic energy + Delta-G solvation = -29041.780228 eV Core-core repulsion = 24941.379171 eV Total energy + Delta-G solvation = -4100.401058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23776 -39.58840 -38.08322 -37.39788 -34.51316 -34.29082 -33.05859 -32.19674 -30.29002 -29.79318 -28.25413 -28.03315 -27.60297 -25.14925 -24.58124 -22.84742 -22.01990 -21.03991 -20.91168 -19.65841 -19.14349 -17.63498 -17.30774 -17.03970 -16.22573 -16.06266 -15.51462 -15.27773 -15.16782 -15.02303 -14.66361 -14.47489 -14.23226 -13.88554 -13.62311 -13.40518 -13.04158 -12.87161 -12.82577 -12.70786 -12.40968 -12.17224 -12.12196 -12.04353 -11.64778 -11.54906 -11.48543 -11.04677 -10.85198 -10.64399 -10.61715 -10.50911 -10.47486 -10.18716 -9.59562 -9.40073 -9.32472 -8.89520 -8.69455 -8.39416 -7.94044 -7.41234 -6.28219 -4.37613 1.84002 2.30123 2.88765 3.08097 3.21596 3.29113 3.31573 3.54645 3.82105 4.23932 4.27142 4.41281 4.57714 4.67088 4.79777 4.88134 4.91470 4.98824 5.02637 5.14256 5.19708 5.36225 5.38790 5.40611 5.46284 5.51269 5.60247 5.61439 5.75350 5.78398 5.98157 6.10396 6.40845 6.44736 6.47798 6.48385 6.68049 6.84575 6.92287 6.96011 7.12531 7.18897 7.29672 7.52517 7.74257 7.80421 8.02132 8.42848 8.65863 9.02282 9.30925 9.40580 10.79242 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.001968 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.886424 B =14225.062896 C =14596.356765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.149 3.851 6 N -0.379 5.379 7 C -0.002 4.002 8 C 0.040 3.960 9 N -0.664 5.664 10 C 0.719 3.281 11 O -0.584 6.584 12 N -0.623 5.623 13 C 0.102 3.898 14 C -0.116 4.116 15 C 0.249 3.751 16 O -0.583 6.583 17 C -0.538 4.538 18 H 0.067 0.933 19 C 0.072 3.928 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.112 3.888 26 C 0.055 3.945 27 N -0.286 5.286 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.403 0.597 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.383 0.617 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 10.352 -17.973 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.027 3.973 6 N -0.166 5.166 7 C -0.148 4.148 8 C -0.066 4.066 9 N -0.312 5.312 10 C 0.422 3.578 11 O -0.462 6.462 12 N -0.360 5.360 13 C -0.021 4.021 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.133 4.133 27 N -0.108 5.108 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.189 0.811 39 H 0.237 0.763 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.234 0.766 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.290 11.190 -19.488 24.716 hybrid contribution -0.304 -0.875 2.040 2.240 sum -10.593 10.315 -17.449 22.871 Atomic orbital electron populations 1.22514 0.87325 1.02445 1.00907 1.61909 1.08065 1.14422 1.42603 1.22384 1.01141 0.88064 1.00676 1.22391 1.02144 0.92381 0.91722 1.21490 0.98759 0.90404 0.86667 1.48176 1.05853 1.37153 1.25376 1.21683 0.97918 1.00099 0.95149 1.17541 0.94071 1.00826 0.94155 1.41991 1.11275 1.48019 1.29949 1.15380 0.84085 0.79295 0.79079 1.90763 1.18618 1.62227 1.74617 1.47914 1.11217 1.46427 1.30408 1.21985 0.84650 0.97159 0.98304 1.22595 1.00235 0.98141 0.94408 1.19624 0.88537 0.84620 0.86430 1.86087 1.38278 1.45562 1.69285 1.21455 1.06340 0.98857 1.30979 0.91504 1.25073 0.96492 0.95976 0.95644 1.69653 1.18503 1.21806 1.43128 0.86399 0.79246 0.81510 0.79715 1.20412 1.21007 1.19719 1.23213 0.92853 0.97763 0.87132 1.24623 0.98923 0.95043 0.94704 1.77339 0.95826 1.22604 1.15028 0.95331 0.91030 0.91130 0.90973 0.91057 0.95422 0.94079 0.89014 0.89123 0.89020 0.81070 0.76299 0.92488 0.92952 0.90349 0.90686 0.76601 0.91922 0.89685 0.92222 0.77505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.07 0.56 0.65 16 2 N -0.55 -4.04 5.02 -251.26 -1.26 -5.30 16 3 C 0.03 0.16 9.57 60.06 0.57 0.74 16 4 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 5 C 0.15 1.26 6.44 -4.04 -0.03 1.23 16 6 N -0.38 -4.57 3.70 -61.02 -0.23 -4.80 16 7 C 0.00 -0.02 11.52 -16.67 -0.19 -0.21 16 8 C 0.04 0.60 6.90 -83.86 -0.58 0.02 16 9 N -0.66 -10.23 5.44 -14.39 -0.08 -10.31 16 10 C 0.72 14.30 8.46 -86.91 -0.74 13.56 16 11 O -0.58 -13.45 13.75 5.28 0.07 -13.37 16 12 N -0.62 -12.48 3.33 -176.25 -0.59 -13.07 16 13 C 0.10 1.69 6.15 -3.07 -0.02 1.67 16 14 C -0.12 -2.19 6.13 -24.90 -0.15 -2.35 16 15 C 0.25 5.86 0.87 -89.64 -0.08 5.78 16 16 O -0.58 -14.62 13.15 -35.23 -0.46 -15.08 16 17 C -0.54 -13.72 8.26 -34.44 -0.28 -14.01 16 18 H 0.07 1.67 7.78 -52.48 -0.41 1.26 16 19 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 20 N -0.89 -23.57 10.72 55.43 0.59 -22.98 16 21 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C 0.11 2.63 5.50 -2.54 -0.01 2.62 16 26 C 0.05 0.93 10.84 -17.22 -0.19 0.74 16 27 N -0.29 -4.41 12.41 30.70 0.38 -4.03 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 31 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.54 6.48 -51.93 -0.34 0.21 16 38 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.40 4.90 7.81 -40.82 -0.32 4.58 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.38 9.97 7.32 45.56 0.33 10.30 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.08 2.26 7.47 -51.93 -0.39 1.87 16 47 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 48 H 0.21 3.89 5.91 -52.49 -0.31 3.58 16 LS Contribution 389.85 15.07 5.87 5.87 Total: -1.00 -30.89 389.85 -8.76 -39.65 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.80 Total: 15.74 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -1.25 Total: 12.55 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.18 Total: -60.48 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.39 Total: -28.46 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.89 -8.76 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425952577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.354 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds