Wall clock time and date at job start Tue Mar 31 2020 21:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00108 * 2 1 4 4 C 1.46898 * 111.00077 * 123.95196 * 2 1 3 5 5 C 1.53006 * 109.47112 * 66.04550 * 4 2 1 6 6 N 1.46497 * 109.47249 * 180.02562 * 5 4 2 7 7 C 1.35843 * 126.06054 * 125.28275 * 6 5 4 8 8 C 1.35726 * 107.56594 * 180.09980 * 7 6 5 9 9 N 1.40847 * 126.07649 * 179.89829 * 8 7 6 10 10 C 1.34781 * 119.99508 * 179.71630 * 9 8 7 11 11 O 1.21599 * 120.00529 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99219 * 179.97438 * 10 9 8 13 13 C 1.47014 * 125.65284 * 0.04827 * 12 10 9 14 14 C 1.54320 * 107.27380 * 181.02071 * 13 12 10 15 15 C 1.55152 * 102.94118 * 22.18831 * 14 13 12 16 16 O 1.42903 * 111.00434 * 82.57714 * 15 14 13 17 17 C 1.50704 * 111.04128 * 206.40570 * 15 14 13 18 18 H 1.08003 * 119.99340 * 356.80762 * 17 15 14 19 19 C 1.37871 * 120.00138 * 176.79441 * 17 15 14 20 20 N 1.31511 * 120.00128 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99837 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47246 * 90.00319 * 21 19 17 23 23 H 1.48500 * 109.47199 * 210.00072 * 21 19 17 24 24 H 1.48500 * 109.47318 * 330.00403 * 21 19 17 25 25 C 1.47430 * 125.64402 * 180.02562 * 12 10 9 26 26 C 1.40239 * 107.84630 * 359.64046 * 8 7 6 27 27 N 1.30838 * 108.34163 * 0.22312 * 26 8 7 28 28 H 1.08995 * 109.47086 * 296.04796 * 1 2 3 29 29 H 1.09005 * 109.46650 * 56.04511 * 1 2 3 30 30 H 1.09001 * 109.46805 * 176.04592 * 1 2 3 31 31 H 1.09005 * 109.47467 * 183.95324 * 3 2 1 32 32 H 1.09000 * 109.46978 * 303.95410 * 3 2 1 33 33 H 1.08997 * 109.47289 * 63.95027 * 3 2 1 34 34 H 1.09005 * 109.47178 * 306.04799 * 4 2 1 35 35 H 1.08993 * 109.47456 * 186.04557 * 4 2 1 36 36 H 1.08997 * 109.46737 * 59.99831 * 5 4 2 37 37 H 1.09002 * 109.47173 * 300.00486 * 5 4 2 38 38 H 1.08005 * 126.21524 * 359.97438 * 7 6 5 39 39 H 0.96998 * 119.99590 * 359.72122 * 9 8 7 40 40 H 1.09000 * 109.88210 * 300.43596 * 13 12 10 41 41 H 1.09006 * 109.88750 * 61.60163 * 13 12 10 42 42 H 1.09007 * 110.72261 * 263.83054 * 14 13 12 43 43 H 1.09000 * 110.72226 * 140.55729 * 14 13 12 44 44 H 0.96700 * 114.00311 * 186.35133 * 16 15 14 45 45 H 0.97002 * 119.99909 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.36336 * 37.07190 * 25 12 10 47 47 H 1.09002 * 110.45871 * 274.79672 * 25 12 10 48 48 H 1.07994 * 125.82809 * 180.18652 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1560 -3.0064 2.1052 7 6 1.4369 -3.8176 2.9238 8 6 2.2915 -4.3324 3.8441 9 7 1.9543 -5.2217 4.8829 10 6 2.9070 -5.6624 5.7284 11 8 4.0574 -5.2917 5.5947 12 7 2.5843 -6.5130 6.7228 13 6 1.2392 -7.0389 6.9978 14 6 1.3480 -7.9489 8.2394 15 6 2.6385 -7.4379 8.9327 16 8 2.3678 -6.2862 9.7342 17 6 3.2781 -8.5265 9.7554 18 1 2.7994 -9.4909 9.8406 19 6 4.4745 -8.2915 10.3992 20 7 5.0572 -7.1171 10.2957 21 14 5.2675 -9.6412 11.4184 22 1 6.1735 -10.4437 10.5580 23 1 6.0474 -9.0319 12.5256 24 1 4.2122 -10.5209 11.9819 25 6 3.5218 -7.0707 7.7145 26 6 3.5708 -3.8259 3.5732 27 7 3.4889 -3.0343 2.5347 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0658 -2.6213 0.0452 37 1 0.5472 -2.3475 0.9323 38 1 0.3773 -4.0154 2.8560 39 1 1.0366 -5.5171 4.9897 40 1 0.5537 -6.2160 7.2002 41 1 0.8855 -7.6173 6.1442 42 1 1.4562 -8.9927 7.9444 43 1 0.4832 -7.8186 8.8900 44 1 3.1577 -5.8734 10.1093 45 1 5.8988 -6.9516 10.7489 46 1 4.2647 -6.3243 7.9957 47 1 4.0105 -7.9609 7.3185 48 1 4.4700 -4.0504 4.1275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425952577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:10 Heat of formation + Delta-G solvation = 0.025038 kcal Electronic energy + Delta-G solvation = -29042.850546 eV Core-core repulsion = 24941.379171 eV Total energy + Delta-G solvation = -4101.471376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35943 -41.06257 -39.13417 -38.59907 -36.06134 -35.77392 -34.17609 -34.04001 -31.84204 -30.80653 -29.62393 -28.98262 -28.49278 -26.87161 -25.43920 -24.36851 -22.88693 -22.09739 -21.92212 -21.41674 -20.45468 -19.22101 -18.76293 -18.37546 -17.26819 -16.96422 -16.90457 -16.72727 -16.28216 -16.19132 -15.96568 -15.61456 -15.47391 -15.00429 -14.87353 -14.64138 -14.54089 -14.34842 -13.86481 -13.67779 -13.48226 -13.39701 -13.29847 -13.03817 -12.82329 -12.67495 -12.58824 -12.49371 -12.30104 -12.24159 -12.21125 -12.05627 -11.76697 -11.61874 -11.24040 -11.13436 -10.63781 -10.37244 -10.29424 -9.53262 -9.45120 -8.60500 -8.22975 -6.39528 0.81768 1.31476 1.43572 1.45636 1.55107 1.60275 1.76643 2.38809 2.40256 2.95549 3.03391 3.08124 3.58399 3.82849 3.91808 3.92942 4.09156 4.13399 4.20037 4.21566 4.31827 4.37323 4.41029 4.49676 4.59258 4.65153 4.67296 4.68389 4.78545 4.82926 4.87041 4.98129 5.05168 5.08793 5.12416 5.19033 5.34213 5.41166 5.48778 5.77969 5.78781 5.89440 5.97852 6.05133 6.11136 6.18557 6.66223 6.68104 7.04569 7.31465 7.38496 7.55514 8.82466 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.001968 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.886424 B =14225.062896 C =14596.356765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.144 3.856 6 N -0.368 5.368 7 C 0.041 3.959 8 C 0.001 3.999 9 N -0.641 5.641 10 C 0.711 3.289 11 O -0.627 6.627 12 N -0.629 5.629 13 C 0.104 3.896 14 C -0.111 4.111 15 C 0.231 3.769 16 O -0.588 6.588 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.264 1.264 25 C 0.128 3.872 26 C 0.027 3.973 27 N -0.310 5.310 28 H 0.027 0.973 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.227 0.773 39 H 0.422 0.578 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.374 0.626 45 H 0.269 0.731 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 9.935 -19.877 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.024 3.976 6 N -0.154 5.154 7 C -0.108 4.108 8 C -0.104 4.104 9 N -0.291 5.291 10 C 0.414 3.586 11 O -0.509 6.509 12 N -0.365 5.365 13 C -0.018 4.018 14 C -0.148 4.148 15 C 0.190 3.810 16 O -0.396 6.396 17 C -0.593 4.593 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.556 5.556 21 Si 0.789 3.211 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.188 1.188 25 C 0.004 3.996 26 C -0.159 4.159 27 N -0.134 5.134 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.244 0.756 39 H 0.260 0.740 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.223 0.777 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.128 10.786 -21.440 27.850 hybrid contribution 0.816 -0.629 2.488 2.693 sum -13.312 10.157 -18.953 25.290 Atomic orbital electron populations 1.22615 0.85832 1.03633 1.01324 1.61946 1.09430 1.14672 1.41612 1.22427 1.00926 0.87891 1.01205 1.22216 1.00740 0.92964 0.91998 1.21850 1.00866 0.89535 0.85378 1.48594 1.04832 1.36456 1.25526 1.22423 0.99450 0.96733 0.92167 1.17728 0.94153 1.02754 0.95803 1.41554 1.11129 1.47428 1.28951 1.15580 0.84289 0.79249 0.79524 1.90756 1.20847 1.63562 1.75709 1.47810 1.11952 1.46794 1.29934 1.22195 0.82940 0.97839 0.98801 1.22599 0.97944 0.99198 0.95079 1.19882 0.91241 0.83774 0.86063 1.86075 1.37752 1.46170 1.69587 1.21825 1.06644 0.99561 1.31234 0.91134 1.25830 0.97148 0.97807 0.96797 1.69782 1.18634 1.23348 1.43828 0.85469 0.78384 0.79099 0.78146 1.20317 1.21142 1.18839 1.22699 0.92731 0.95749 0.88383 1.24258 0.99231 0.96737 0.95702 1.77292 0.98122 1.22895 1.15041 0.95455 0.90011 0.89643 0.91621 0.89569 0.95667 0.94945 0.91416 0.88671 0.85080 0.75626 0.74025 0.90509 0.88685 0.89168 0.89548 0.77711 0.92197 0.94016 0.93967 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.32 127.69 1.19 1.30 16 2 N -0.55 -7.00 5.02 -948.83 -4.76 -11.77 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.05 0.79 5.14 86.31 0.44 1.23 16 5 C 0.14 1.96 6.44 86.38 0.56 2.51 16 6 N -0.37 -7.97 3.70 -346.98 -1.29 -9.25 16 7 C 0.04 0.78 11.52 83.49 0.96 1.74 16 8 C 0.00 0.02 6.90 37.59 0.26 0.28 16 9 N -0.64 -18.67 5.44 -317.69 -1.73 -20.39 16 10 C 0.71 28.61 8.46 179.05 1.51 30.13 16 11 O -0.63 -30.69 13.75 -4.03 -0.06 -30.74 16 12 N -0.63 -25.08 3.33 -829.80 -2.76 -27.84 16 13 C 0.10 3.13 6.15 86.73 0.53 3.67 16 14 C -0.11 -3.96 6.13 31.78 0.19 -3.77 16 15 C 0.23 10.98 0.87 -10.16 -0.01 10.97 16 16 O -0.59 -30.03 13.15 -148.98 -1.96 -31.99 16 17 C -0.55 -28.53 8.26 25.60 0.21 -28.32 16 18 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 19 C 0.02 1.31 5.30 84.65 0.45 1.75 16 20 N -0.92 -50.36 10.72 21.44 0.23 -50.13 16 21 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 C 0.13 6.24 5.50 86.84 0.48 6.72 16 26 C 0.03 0.95 10.84 85.33 0.92 1.87 16 27 N -0.31 -9.65 12.41 -56.78 -0.70 -10.35 16 28 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.50 8.12 -2.38 -0.02 0.48 16 30 H 0.08 0.41 6.47 -2.39 -0.02 0.39 16 31 H 0.06 0.82 8.12 -2.38 -0.02 0.80 16 32 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 33 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.03 0.56 8.12 -2.38 -0.02 0.54 16 35 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 0.81 6.48 -2.39 -0.02 0.80 16 38 H 0.23 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.42 8.68 7.81 -92.71 -0.72 7.96 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.09 2.99 8.03 -2.38 -0.02 2.98 16 43 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.37 20.32 7.32 -74.06 -0.54 19.78 16 45 H 0.27 14.23 8.31 -92.71 -0.77 13.45 16 46 H 0.04 2.36 7.47 -2.39 -0.02 2.35 16 47 H 0.04 2.14 8.03 -2.39 -0.02 2.13 16 48 H 0.18 7.25 5.91 -2.91 -0.02 7.24 16 Total: -1.00 -72.90 389.85 -2.35 -75.25 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.28 Total: 41.78 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 8.93 Total: 31.58 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -11.01 Total: -129.73 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -2.01 Total: -62.73 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.90 -2.35 -75.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425952577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.272 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds