Wall clock time and date at job start Tue Mar 31 2020 21:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99667 * 2 1 4 4 C 1.50707 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.30919 * 126.48596 * 269.98363 * 4 3 2 6 6 N 1.28981 * 109.76050 * 179.97438 * 5 4 3 7 7 C 1.29640 * 109.46965 * 359.95055 * 6 5 4 8 8 N 1.34417 * 126.48149 * 89.99721 * 4 3 2 9 9 C 1.46301 * 129.75951 * 0.23186 * 8 4 3 10 10 C 1.53469 * 108.17573 * 163.58688 * 9 8 4 11 11 N 1.46971 * 109.74154 * 49.60636 * 10 9 8 12 12 C 1.46902 * 110.99655 * 165.13517 * 11 10 9 13 13 C 1.53006 * 109.46626 * 190.32404 * 12 11 10 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00041 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99707 * 359.97438 * 16 14 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 16 14 13 19 19 C 1.50702 * 109.46904 * 89.99597 * 18 16 14 20 20 H 1.07993 * 120.00490 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00050 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47522 * 89.99831 * 23 21 19 25 25 H 1.48508 * 109.46941 * 209.99577 * 23 21 19 26 26 H 1.48502 * 109.47592 * 329.99302 * 23 21 19 27 27 C 1.47384 * 111.24996 * 289.26649 * 11 10 9 28 28 H 1.09007 * 109.47300 * 60.00286 * 1 2 3 29 29 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47581 * 300.00212 * 1 2 3 31 31 H 1.09002 * 109.47106 * 60.00117 * 3 2 1 32 32 H 1.09000 * 109.47428 * 299.99747 * 3 2 1 33 33 H 1.09002 * 109.72380 * 283.25880 * 9 8 4 34 34 H 1.08993 * 109.72549 * 43.87826 * 9 8 4 35 35 H 1.08994 * 109.42787 * 289.51929 * 10 9 8 36 36 H 1.09004 * 109.42208 * 169.68420 * 10 9 8 37 37 H 1.08993 * 109.47737 * 70.32536 * 12 11 10 38 38 H 1.09000 * 109.47263 * 310.32098 * 12 11 10 39 39 H 1.09000 * 109.47050 * 299.99824 * 13 12 11 40 40 H 1.09001 * 109.46801 * 59.99937 * 13 12 11 41 41 H 1.09002 * 109.47085 * 90.00762 * 17 16 14 42 42 H 1.09002 * 109.46740 * 210.00435 * 17 16 14 43 43 H 1.09001 * 109.47266 * 330.00158 * 17 16 14 44 44 H 1.08991 * 109.47410 * 209.99714 * 18 16 14 45 45 H 1.09007 * 109.47039 * 329.99988 * 18 16 14 46 46 H 0.97004 * 119.99848 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.75053 * 169.70444 * 27 11 10 48 48 H 1.08997 * 109.75582 * 290.40009 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2881 1.1257 1.0536 6 7 5.5196 1.0275 0.6829 7 6 5.5819 1.0206 -0.6120 8 7 4.3096 1.1233 -1.0798 9 6 3.9637 1.1550 -2.5010 10 6 5.2385 1.4651 -3.2972 11 7 6.3237 0.5737 -2.8638 12 6 7.4356 0.5928 -3.8237 13 6 8.4230 -0.5251 -3.4824 14 6 9.5633 -0.5060 -4.4674 15 8 9.5840 0.3201 -5.3552 16 7 10.5597 -1.4075 -4.3625 17 6 10.5344 -2.4057 -3.2904 18 6 11.6686 -1.3886 -5.3197 19 6 12.7641 -0.4928 -4.8015 20 1 12.6464 0.0116 -3.8539 21 6 13.9168 -0.3172 -5.5374 22 7 14.0604 -0.9317 -6.6912 23 14 15.2751 0.7926 -4.8949 24 1 16.2185 -0.0055 -4.0714 25 1 16.0048 1.3952 -6.0394 26 1 14.6819 1.8705 -4.0633 27 6 6.7896 0.9189 -1.5089 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.5668 0.1863 -2.8047 34 1 3.2191 1.9303 -2.6812 35 1 5.5301 2.5012 -3.1256 36 1 5.0479 1.3142 -4.3598 37 1 7.9443 1.5553 -3.7714 38 1 7.0485 0.4406 -4.8312 39 1 8.8100 -0.3730 -2.4749 40 1 7.9142 -1.4877 -3.5348 41 1 10.0104 -3.2968 -3.6360 42 1 11.5556 -2.6687 -3.0148 43 1 10.0184 -1.9942 -2.4229 44 1 12.0557 -2.3994 -5.4473 45 1 11.3141 -1.0114 -6.2790 46 1 14.8716 -0.8084 -7.2088 47 1 7.4583 0.1412 -1.1400 48 1 7.3133 1.8745 -1.5317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460364426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:55 Heat of formation + Delta-G solvation = 19.849184 kcal Electronic energy + Delta-G solvation = -29025.972125 eV Core-core repulsion = 24925.360389 eV Total energy + Delta-G solvation = -4100.611736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.59549 -39.36340 -38.44009 -38.28483 -35.27201 -34.80092 -32.76728 -32.46731 -31.22225 -30.24568 -28.32245 -27.66262 -26.57192 -25.91837 -25.63129 -24.21668 -23.02674 -21.75339 -21.46018 -20.03743 -18.45365 -17.63537 -17.45353 -16.70838 -16.53584 -16.49764 -16.26103 -16.08498 -15.70413 -15.39172 -15.07225 -14.83217 -14.60314 -14.34327 -14.08462 -13.52140 -13.38554 -13.06516 -13.00211 -12.70925 -12.44975 -12.23476 -12.16192 -12.01110 -12.00265 -11.79460 -11.70236 -11.60251 -11.18227 -11.03120 -10.87442 -10.67255 -10.57008 -10.42970 -10.31902 -10.17550 -9.64657 -9.47795 -8.96379 -8.81814 -8.45322 -7.67029 -6.06117 -4.10925 1.36339 2.07520 2.49198 3.12286 3.29020 3.31033 3.34842 3.37029 3.42443 3.85769 3.97660 4.00496 4.06459 4.26358 4.42787 4.46950 4.52706 4.63055 4.79258 4.82483 4.87253 4.97418 5.03891 5.06453 5.14061 5.16842 5.20305 5.23600 5.29524 5.43831 5.54430 5.56531 5.76246 5.80829 5.84291 5.88350 5.97123 6.22185 6.39873 6.45776 6.48196 6.60235 7.03235 7.41756 7.51314 7.90104 8.21373 8.38792 8.44632 8.87597 9.05295 9.54226 11.01905 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.001993 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.975780 B =14046.058511 C =14307.433759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.154 3.846 4 C 0.172 3.828 5 N -0.277 5.277 6 N -0.285 5.285 7 C 0.192 3.808 8 N -0.457 5.457 9 C 0.110 3.890 10 C 0.038 3.962 11 N -0.543 5.543 12 C 0.076 3.924 13 C -0.139 4.139 14 C 0.505 3.495 15 O -0.547 6.547 16 N -0.602 5.602 17 C 0.083 3.917 18 C 0.244 3.756 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.135 3.865 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.263 0.737 47 H 0.119 0.881 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.350 2.919 9.619 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.076 3.924 4 C -0.095 4.095 5 N -0.119 5.119 6 N -0.125 5.125 7 C -0.076 4.076 8 N -0.149 5.149 9 C -0.014 4.014 10 C -0.091 4.091 11 N -0.268 5.268 12 C -0.051 4.051 13 C -0.179 4.179 14 C 0.291 3.709 15 O -0.425 6.425 16 N -0.333 5.333 17 C -0.061 4.061 18 C 0.125 3.875 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C 0.006 3.994 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.136 0.864 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.880 2.636 10.413 28.947 hybrid contribution 0.547 1.468 -0.963 1.839 sum -26.333 4.104 9.450 28.277 Atomic orbital electron populations 1.22818 0.79779 1.03490 1.00368 1.87992 1.20450 1.26220 1.95500 1.20446 0.83256 0.86122 1.02610 1.23949 0.95537 1.06681 0.83306 1.74551 0.96137 1.17717 1.23515 1.74041 1.11992 1.18613 1.07856 1.24687 0.86792 1.03646 0.92516 1.45920 1.07181 1.53155 1.08599 1.22219 0.98710 1.04630 0.75796 1.22465 0.90276 0.95644 1.00679 1.62096 1.11014 1.51830 1.01894 1.21879 0.89612 0.98477 0.95152 1.21671 0.95411 1.00899 0.99944 1.20206 0.83212 0.81608 0.85841 1.90668 1.78411 1.37529 1.35928 1.48160 1.23556 1.30845 1.30772 1.21656 1.02902 0.91548 0.90033 1.19295 0.82494 0.97354 0.88333 1.21428 1.00911 1.28238 1.05941 0.92474 1.24943 0.98438 0.95990 0.94795 1.69932 1.27604 1.43032 1.12788 0.86496 0.81672 0.80810 0.78432 1.20612 1.21093 1.19915 1.20781 0.90170 1.02903 0.85583 0.93722 0.89008 0.93415 0.89405 0.91339 0.88034 0.88418 0.92969 0.87331 0.92879 0.89029 0.89373 0.88581 0.93655 0.90769 0.92334 0.95003 0.93829 0.92714 0.86353 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.33 10.69 -35.23 -0.38 -3.71 16 3 C 0.15 1.14 6.36 36.01 0.23 1.37 16 4 C 0.17 1.95 7.71 -155.63 -1.20 0.75 16 5 N -0.28 -4.06 12.24 32.66 0.40 -3.66 16 6 N -0.28 -4.30 12.20 32.76 0.40 -3.90 16 7 C 0.19 2.36 7.86 -155.27 -1.22 1.14 16 8 N -0.46 -4.73 3.12 -110.79 -0.35 -5.08 16 9 C 0.11 0.71 7.06 -3.91 -0.03 0.68 16 10 C 0.04 0.27 5.55 -3.54 -0.02 0.25 16 11 N -0.54 -5.25 4.66 -235.24 -1.10 -6.34 16 12 C 0.08 0.89 4.25 -3.82 -0.02 0.87 16 13 C -0.14 -1.82 4.18 -27.88 -0.12 -1.94 16 14 C 0.51 9.83 7.67 -10.99 -0.08 9.74 16 15 O -0.55 -12.95 15.56 5.56 0.09 -12.86 16 16 N -0.60 -12.37 2.86 -182.95 -0.52 -12.89 16 17 C 0.08 1.27 10.24 59.85 0.61 1.88 16 18 C 0.24 6.32 5.16 -5.19 -0.03 6.29 16 19 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.14 1.41 5.46 -4.67 -0.03 1.38 16 28 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.36 7.98 -51.93 -0.41 -0.06 16 35 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.11 0.60 7.82 -51.93 -0.41 0.20 16 37 H 0.05 0.68 8.04 -51.93 -0.42 0.27 16 38 H 0.09 1.09 7.82 -51.93 -0.41 0.69 16 39 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 40 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 44 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 45 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.12 1.19 6.80 -51.93 -0.35 0.84 16 48 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -37.48 394.42 -8.62 -46.10 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -7.62 Total: -4.82 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.20 Total: 10.17 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.43 Total: -57.57 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.29 Total: -16.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.48 -8.62 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460364426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.945 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds