Wall clock time and date at job start Tue Mar 31 2020 21:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99667 * 2 1 4 4 C 1.50707 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.30919 * 126.48596 * 269.98363 * 4 3 2 6 6 N 1.28981 * 109.76050 * 179.97438 * 5 4 3 7 7 C 1.29640 * 109.46965 * 359.95055 * 6 5 4 8 8 N 1.34417 * 126.48149 * 89.99721 * 4 3 2 9 9 C 1.46301 * 129.75951 * 0.23186 * 8 4 3 10 10 C 1.53469 * 108.17573 * 163.58688 * 9 8 4 11 11 N 1.46971 * 109.74154 * 49.60636 * 10 9 8 12 12 C 1.46902 * 110.99655 * 165.13517 * 11 10 9 13 13 C 1.53006 * 109.46626 * 190.32404 * 12 11 10 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00041 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99707 * 359.97438 * 16 14 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 16 14 13 19 19 C 1.50702 * 109.46904 * 89.99597 * 18 16 14 20 20 H 1.07993 * 120.00490 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00050 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47522 * 89.99831 * 23 21 19 25 25 H 1.48508 * 109.46941 * 209.99577 * 23 21 19 26 26 H 1.48502 * 109.47592 * 329.99302 * 23 21 19 27 27 C 1.47384 * 111.24996 * 289.26649 * 11 10 9 28 28 H 1.09007 * 109.47300 * 60.00286 * 1 2 3 29 29 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47581 * 300.00212 * 1 2 3 31 31 H 1.09002 * 109.47106 * 60.00117 * 3 2 1 32 32 H 1.09000 * 109.47428 * 299.99747 * 3 2 1 33 33 H 1.09002 * 109.72380 * 283.25880 * 9 8 4 34 34 H 1.08993 * 109.72549 * 43.87826 * 9 8 4 35 35 H 1.08994 * 109.42787 * 289.51929 * 10 9 8 36 36 H 1.09004 * 109.42208 * 169.68420 * 10 9 8 37 37 H 1.08993 * 109.47737 * 70.32536 * 12 11 10 38 38 H 1.09000 * 109.47263 * 310.32098 * 12 11 10 39 39 H 1.09000 * 109.47050 * 299.99824 * 13 12 11 40 40 H 1.09001 * 109.46801 * 59.99937 * 13 12 11 41 41 H 1.09002 * 109.47085 * 90.00762 * 17 16 14 42 42 H 1.09002 * 109.46740 * 210.00435 * 17 16 14 43 43 H 1.09001 * 109.47266 * 330.00158 * 17 16 14 44 44 H 1.08991 * 109.47410 * 209.99714 * 18 16 14 45 45 H 1.09007 * 109.47039 * 329.99988 * 18 16 14 46 46 H 0.97004 * 119.99848 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.75053 * 169.70444 * 27 11 10 48 48 H 1.08997 * 109.75582 * 290.40009 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2881 1.1257 1.0536 6 7 5.5196 1.0275 0.6829 7 6 5.5819 1.0206 -0.6120 8 7 4.3096 1.1233 -1.0798 9 6 3.9637 1.1550 -2.5010 10 6 5.2385 1.4651 -3.2972 11 7 6.3237 0.5737 -2.8638 12 6 7.4356 0.5928 -3.8237 13 6 8.4230 -0.5251 -3.4824 14 6 9.5633 -0.5060 -4.4674 15 8 9.5840 0.3201 -5.3552 16 7 10.5597 -1.4075 -4.3625 17 6 10.5344 -2.4057 -3.2904 18 6 11.6686 -1.3886 -5.3197 19 6 12.7641 -0.4928 -4.8015 20 1 12.6464 0.0116 -3.8539 21 6 13.9168 -0.3172 -5.5374 22 7 14.0604 -0.9317 -6.6912 23 14 15.2751 0.7926 -4.8949 24 1 16.2185 -0.0055 -4.0714 25 1 16.0048 1.3952 -6.0394 26 1 14.6819 1.8705 -4.0633 27 6 6.7896 0.9189 -1.5089 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.5668 0.1863 -2.8047 34 1 3.2191 1.9303 -2.6812 35 1 5.5301 2.5012 -3.1256 36 1 5.0479 1.3142 -4.3598 37 1 7.9443 1.5553 -3.7714 38 1 7.0485 0.4406 -4.8312 39 1 8.8100 -0.3730 -2.4749 40 1 7.9142 -1.4877 -3.5348 41 1 10.0104 -3.2968 -3.6360 42 1 11.5556 -2.6687 -3.0148 43 1 10.0184 -1.9942 -2.4229 44 1 12.0557 -2.3994 -5.4473 45 1 11.3141 -1.0114 -6.2790 46 1 14.8716 -0.8084 -7.2088 47 1 7.4583 0.1412 -1.1400 48 1 7.3133 1.8745 -1.5317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460364426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:54 Heat of formation + Delta-G solvation = -7.793118 kcal Electronic energy + Delta-G solvation = -29027.170785 eV Core-core repulsion = 24925.360389 eV Total energy + Delta-G solvation = -4101.810396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.43515 -40.74973 -39.30500 -38.89022 -36.60985 -35.99320 -34.73100 -33.45310 -32.14834 -31.06412 -29.73384 -28.65345 -27.44959 -27.08865 -26.45578 -25.37864 -24.37108 -22.83762 -22.34852 -20.78081 -19.91495 -18.69911 -18.41077 -18.13129 -17.79058 -17.26516 -17.09798 -16.85111 -16.76182 -16.52722 -16.20947 -16.12862 -15.73541 -15.42061 -14.98355 -14.64489 -14.30627 -14.01200 -13.96373 -13.72120 -13.60496 -13.43125 -13.38017 -13.28096 -13.08321 -12.83622 -12.75366 -12.61668 -12.48291 -12.39362 -12.36964 -12.19777 -11.97741 -11.69110 -11.52461 -11.16211 -10.77471 -10.63902 -10.58985 -10.36534 -9.60880 -9.39240 -8.22101 -6.36780 0.58444 1.36761 1.37077 1.39048 1.49398 1.60555 1.87303 2.18989 2.38087 2.63931 2.75985 3.07303 3.16665 3.38132 3.47983 3.67326 3.81898 3.87396 3.99819 4.11293 4.13704 4.19635 4.24133 4.37521 4.44334 4.52677 4.53564 4.58046 4.61602 4.65368 4.73093 4.76407 4.79579 4.90629 4.91260 4.94802 4.99660 4.99969 5.05748 5.25011 5.57131 5.62387 5.69262 5.84436 5.85219 6.05633 6.06885 6.70666 6.82106 7.29072 7.50586 7.55609 8.84683 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.001993 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.975780 B =14046.058511 C =14307.433759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.154 3.846 4 C 0.179 3.821 5 N -0.324 5.324 6 N -0.326 5.326 7 C 0.186 3.814 8 N -0.455 5.455 9 C 0.107 3.893 10 C 0.034 3.966 11 N -0.539 5.539 12 C 0.086 3.914 13 C -0.122 4.122 14 C 0.497 3.503 15 O -0.598 6.598 16 N -0.612 5.612 17 C 0.078 3.922 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.967 3.033 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.273 1.273 27 C 0.137 3.863 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.053 0.947 36 H 0.129 0.871 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.021 0.979 45 H 0.000 1.000 46 H 0.267 0.733 47 H 0.121 0.879 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.273 3.317 10.334 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.076 3.924 4 C -0.090 4.090 5 N -0.167 5.167 6 N -0.167 5.167 7 C -0.083 4.083 8 N -0.146 5.146 9 C -0.014 4.014 10 C -0.094 4.094 11 N -0.264 5.264 12 C -0.041 4.041 13 C -0.162 4.162 14 C 0.286 3.714 15 O -0.480 6.480 16 N -0.343 5.343 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.197 1.197 27 C 0.007 3.993 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.113 0.887 44 H 0.039 0.961 45 H 0.018 0.982 46 H 0.076 0.924 47 H 0.139 0.861 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.840 3.006 11.161 31.070 hybrid contribution 1.040 1.313 -1.224 2.075 sum -27.800 4.319 9.937 29.837 Atomic orbital electron populations 1.23011 0.77779 1.04248 1.01835 1.87933 1.22641 1.26950 1.95816 1.20695 0.80742 0.86175 1.04796 1.24654 0.97077 1.04437 0.82818 1.74441 0.96546 1.20088 1.25586 1.73917 1.12810 1.20331 1.09594 1.24890 0.88059 1.03259 0.92128 1.46159 1.06337 1.52229 1.09870 1.22554 0.99035 1.06437 0.73382 1.22629 0.89600 0.95184 1.01962 1.62071 1.10544 1.52778 1.01021 1.21676 0.89830 0.97062 0.95557 1.21605 0.93226 1.02824 0.98525 1.21297 0.83967 0.80108 0.86076 1.90636 1.79636 1.39440 1.38320 1.48199 1.22532 1.32464 1.31106 1.21928 1.03257 0.91462 0.89746 1.18748 0.83709 0.95929 0.87982 1.21712 1.01838 1.28623 1.05875 0.92849 1.25857 1.01006 0.97405 0.94971 1.70050 1.28456 1.44316 1.13944 0.85427 0.78637 0.78825 0.77989 1.18971 1.20637 1.19745 1.20806 0.89657 1.03170 0.85669 0.91621 0.88701 0.92548 0.88630 0.87683 0.87251 0.84810 0.92870 0.85343 0.94452 0.89219 0.87371 0.86116 0.91145 0.91833 0.88726 0.96054 0.98210 0.92431 0.86108 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.33 10.69 -148.98 -1.59 -7.92 16 3 C 0.15 1.89 6.36 71.24 0.45 2.34 16 4 C 0.18 3.79 7.71 138.21 1.07 4.85 16 5 N -0.32 -9.55 12.24 -50.58 -0.62 -10.17 16 6 N -0.33 -9.91 12.20 -50.26 -0.61 -10.52 16 7 C 0.19 4.41 7.86 138.11 1.09 5.49 16 8 N -0.46 -8.49 3.12 -504.44 -1.57 -10.07 16 9 C 0.11 1.03 7.06 86.57 0.61 1.64 16 10 C 0.03 0.39 5.55 86.45 0.48 0.87 16 11 N -0.54 -9.17 4.66 -898.17 -4.18 -13.35 16 12 C 0.09 1.88 4.25 86.31 0.37 2.24 16 13 C -0.12 -2.95 4.18 29.85 0.12 -2.82 16 14 C 0.50 19.24 7.67 87.66 0.67 19.91 16 15 O -0.60 -29.14 15.56 -3.04 -0.05 -29.19 16 16 N -0.61 -25.19 2.86 -851.12 -2.43 -27.62 16 17 C 0.08 2.26 10.24 127.77 1.31 3.57 16 18 C 0.26 13.81 5.16 85.63 0.44 14.26 16 19 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 20 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 21 C 0.01 0.38 5.46 84.66 0.46 0.84 16 22 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 23 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.14 2.63 5.46 85.49 0.47 3.10 16 28 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.48 7.92 -2.39 -0.02 0.46 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.13 0.35 7.98 -2.39 -0.02 0.33 16 35 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 36 H 0.13 1.00 7.82 -2.38 -0.02 0.98 16 37 H 0.04 0.93 8.04 -2.39 -0.02 0.92 16 38 H 0.09 2.01 7.82 -2.39 -0.02 1.99 16 39 H 0.11 2.24 5.96 -2.39 -0.01 2.22 16 40 H 0.12 2.41 8.11 -2.39 -0.02 2.39 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 43 H 0.09 2.04 6.44 -2.39 -0.02 2.03 16 44 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 45 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 46 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.12 2.22 6.80 -2.39 -0.02 2.21 16 48 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 Total: -1.00 -86.32 394.42 1.24 -85.09 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.96 Total: 5.73 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 9.03 Total: 26.85 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -9.13 Total: -127.46 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.64 Total: -37.11 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -86.32 1.24 -85.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460364426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.293 kcal (2) G-P(sol) polarization free energy of solvation -86.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds