Wall clock time and date at job start Tue Mar 31 2020 21:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 110.99902 * 2 1 4 4 C 1.46899 * 110.99497 * 123.95163 * 2 1 3 5 5 C 1.53002 * 109.47012 * 169.99997 * 4 2 1 6 6 N 1.46497 * 109.47152 * 180.02562 * 5 4 2 7 7 N 1.40064 * 126.04532 * 270.15880 * 6 5 4 8 8 C 1.30849 * 108.37319 * 180.25079 * 7 6 5 9 9 C 1.39760 * 108.32029 * 359.77128 * 8 7 6 10 10 C 1.35255 * 126.04428 * 90.00128 * 6 5 4 11 11 N 1.39493 * 126.21556 * 0.02562 * 10 6 5 12 12 C 1.34778 * 119.99921 * 179.71318 * 11 10 6 13 13 O 1.21587 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64488 * 359.97438 * 14 12 11 16 16 C 1.54320 * 107.26701 * 178.99212 * 15 14 12 17 17 C 1.55153 * 102.94383 * 337.80525 * 16 15 14 18 18 O 1.42895 * 111.00660 * 277.38826 * 17 16 15 19 19 C 1.50702 * 111.00367 * 153.57571 * 17 16 15 20 20 H 1.08002 * 120.00299 * 3.18452 * 19 17 16 21 21 C 1.37884 * 119.99942 * 182.90010 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 C 1.47463 * 125.62945 * 179.97438 * 14 12 11 28 28 H 1.08997 * 109.47427 * 296.04761 * 1 2 3 29 29 H 1.09006 * 109.47084 * 56.04961 * 1 2 3 30 30 H 1.09002 * 109.47203 * 176.04487 * 1 2 3 31 31 H 1.09000 * 109.46923 * 183.95048 * 3 2 1 32 32 H 1.08993 * 109.47272 * 303.94894 * 3 2 1 33 33 H 1.08998 * 109.47202 * 63.95521 * 3 2 1 34 34 H 1.09001 * 109.47311 * 50.00091 * 4 2 1 35 35 H 1.08993 * 109.47470 * 290.00249 * 4 2 1 36 36 H 1.09001 * 109.47006 * 59.99907 * 5 4 2 37 37 H 1.09000 * 109.46777 * 299.99911 * 5 4 2 38 38 H 1.07999 * 125.83843 * 179.78291 * 8 7 6 39 39 H 1.07994 * 126.09034 * 179.97438 * 9 8 7 40 40 H 0.96998 * 120.00387 * 359.70967 * 11 10 6 41 41 H 1.09000 * 109.88086 * 59.57636 * 15 14 12 42 42 H 1.09003 * 109.87956 * 298.40624 * 15 14 12 43 43 H 1.09004 * 110.71836 * 219.43859 * 16 15 14 44 44 H 1.09006 * 110.72351 * 96.16930 * 16 15 14 45 45 H 0.96695 * 114.00567 * 176.81707 * 18 17 16 46 46 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.34826 * 85.23635 * 27 14 12 48 48 H 1.09002 * 110.40574 * 322.89852 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9705 6 7 4.0292 -1.7198 2.1047 7 7 4.5052 -1.1857 3.3089 8 6 4.8934 -2.1741 4.0735 9 6 4.6745 -3.3721 3.3878 10 6 4.1370 -3.0662 2.1754 11 7 3.7698 -3.9756 1.1834 12 6 3.9381 -5.2975 1.3854 13 8 4.4096 -5.6973 2.4323 14 7 3.5829 -6.1762 0.4271 15 6 3.0024 -5.8315 -0.8790 16 6 2.7846 -7.1525 -1.6465 17 6 3.7776 -8.1238 -0.9553 18 8 5.0958 -7.9718 -1.4855 19 6 3.3105 -9.5514 -1.0778 20 1 2.4181 -9.7811 -1.6412 21 6 4.0257 -10.5649 -0.4758 22 7 5.1123 -10.2851 0.2102 23 14 3.4509 -12.3351 -0.6342 24 1 3.4218 -12.7197 -2.0683 25 1 4.3856 -13.2264 0.0989 26 1 2.0883 -12.4667 -0.0586 27 6 3.7122 -7.6425 0.5156 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9162 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5088 -1.7406 1.1757 35 1 1.7974 -0.2248 2.0628 36 1 3.9909 0.0193 0.9324 37 1 3.7023 -1.4967 0.0453 38 1 5.3113 -2.0801 5.0649 39 1 4.8933 -4.3641 3.7545 40 1 3.3933 -3.6566 0.3483 41 1 3.6888 -5.1903 -1.4320 42 1 2.0486 -5.3230 -0.7382 43 1 3.0340 -7.0316 -2.7007 44 1 1.7587 -7.5019 -1.5295 45 1 5.7606 -8.5234 -1.0510 46 1 5.6153 -10.9981 0.6341 47 1 2.8435 -8.0701 1.0162 48 1 4.6266 -7.9122 1.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466715773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:22 Heat of formation + Delta-G solvation = 28.031551 kcal Electronic energy + Delta-G solvation = -30022.444752 eV Core-core repulsion = 25922.187830 eV Total energy + Delta-G solvation = -4100.256922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41708 -39.68364 -38.04518 -37.52639 -34.70360 -34.31855 -33.42116 -32.23416 -30.44225 -29.06531 -28.54865 -28.01212 -27.80747 -25.20710 -24.76569 -23.06714 -21.86053 -21.50292 -20.56696 -19.70819 -19.18609 -18.29826 -17.27733 -16.94660 -16.23354 -15.92887 -15.63443 -15.42554 -15.16428 -14.98207 -14.50693 -14.44061 -14.36783 -13.85421 -13.52067 -13.40334 -13.13489 -12.92679 -12.82758 -12.73557 -12.36319 -12.24751 -12.14816 -12.01313 -11.71650 -11.62777 -11.41494 -11.07907 -10.92977 -10.77288 -10.71031 -10.59035 -10.52667 -10.24562 -9.64631 -9.44696 -9.00183 -8.82823 -8.73658 -8.47851 -8.09969 -7.69842 -6.32711 -4.42665 1.91222 2.05893 2.90850 3.01244 3.19944 3.26229 3.27539 3.59207 3.64235 4.10079 4.24257 4.30985 4.50240 4.71740 4.86563 4.93852 4.95228 4.99498 5.13305 5.16531 5.26773 5.30698 5.42193 5.48854 5.49830 5.51764 5.53554 5.69715 5.73260 5.90481 5.97905 6.13564 6.32202 6.41167 6.46240 6.50649 6.61972 6.76624 6.78206 6.93947 7.05598 7.18985 7.23577 7.38102 7.69668 7.83104 7.95376 8.24600 8.60530 8.81559 9.26300 9.36293 10.74505 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.002779 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.717763 B =10072.798904 C =11291.463785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.017 3.983 4 C 0.037 3.963 5 C 0.137 3.863 6 N -0.393 5.393 7 N -0.305 5.305 8 C 0.062 3.938 9 C -0.285 4.285 10 C 0.338 3.662 11 N -0.664 5.664 12 C 0.722 3.278 13 O -0.563 6.563 14 N -0.618 5.618 15 C 0.100 3.900 16 C -0.115 4.115 17 C 0.250 3.750 18 O -0.583 6.583 19 C -0.540 4.540 20 H 0.067 0.933 21 C 0.072 3.928 22 N -0.892 5.892 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.403 0.597 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.385 0.615 46 H 0.272 0.728 47 H 0.062 0.938 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 18.901 -0.074 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.131 4.131 4 C -0.092 4.092 5 C 0.015 3.985 6 N -0.182 5.182 7 N -0.127 5.127 8 C -0.124 4.124 9 C -0.317 4.317 10 C 0.117 3.883 11 N -0.315 5.315 12 C 0.424 3.576 13 O -0.439 6.439 14 N -0.355 5.355 15 C -0.023 4.023 16 C -0.153 4.153 17 C 0.209 3.791 18 O -0.393 6.393 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.531 5.531 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.009 4.009 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.201 0.799 39 H 0.193 0.807 40 H 0.238 0.762 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.236 0.764 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.241 19.984 -0.223 20.937 hybrid contribution -0.472 -1.557 0.629 1.745 sum -6.713 18.427 0.406 19.616 Atomic orbital electron populations 1.22398 0.86441 1.02740 1.00750 1.61915 1.08558 1.14160 1.42196 1.22504 1.01099 0.88577 1.00895 1.22523 0.94715 0.99416 0.92544 1.21519 0.93534 0.97803 0.85670 1.48468 1.53066 1.01979 1.14684 1.77390 1.21922 1.21404 0.91940 1.23748 0.98501 0.90448 0.99661 1.21702 1.14724 1.01191 0.94105 1.17732 0.98660 0.81028 0.90893 1.42079 1.66573 1.04733 1.18076 1.15188 0.79621 0.78935 0.83860 1.90845 1.50208 1.76991 1.25810 1.47963 1.64050 1.08473 1.14972 1.22043 0.96429 0.99353 0.84525 1.22596 1.00275 0.93015 0.99396 1.19606 0.81140 0.92165 0.86196 1.86081 1.19638 1.69398 1.64148 1.21418 1.11612 0.90624 1.34140 0.91478 1.25085 0.94531 0.99956 0.93621 1.69635 1.16333 1.33957 1.33168 0.86441 0.78675 0.83259 0.78414 1.19992 1.21047 1.20002 1.23309 1.02426 0.73123 1.02086 0.95450 0.90901 0.91018 0.91010 0.90976 0.95264 0.90252 0.93424 0.88415 0.88845 0.79933 0.80747 0.76153 0.92367 0.92851 0.90539 0.90250 0.76438 0.91777 0.91987 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.75 16 2 N -0.54 -4.40 5.02 -251.27 -1.26 -5.66 16 3 C 0.02 0.12 9.32 60.06 0.56 0.68 16 4 C 0.04 0.35 5.28 -3.82 -0.02 0.33 16 5 C 0.14 1.37 6.18 -4.04 -0.02 1.35 16 6 N -0.39 -5.31 3.62 -60.39 -0.22 -5.53 16 7 N -0.30 -4.40 12.56 30.60 0.38 -4.02 16 8 C 0.06 0.87 12.01 -17.40 -0.21 0.66 16 9 C -0.29 -4.72 9.65 -39.78 -0.38 -5.10 16 10 C 0.34 5.29 7.66 -153.15 -1.17 4.12 16 11 N -0.66 -10.22 5.38 -15.84 -0.09 -10.30 16 12 C 0.72 14.03 8.45 -86.91 -0.73 13.30 16 13 O -0.56 -12.72 13.72 5.29 0.07 -12.65 16 14 N -0.62 -12.02 3.33 -176.21 -0.59 -12.61 16 15 C 0.10 1.60 6.15 -3.06 -0.02 1.59 16 16 C -0.11 -2.12 6.13 -24.90 -0.15 -2.27 16 17 C 0.25 5.75 0.88 -89.63 -0.08 5.67 16 18 O -0.58 -14.34 13.17 -35.23 -0.46 -14.81 16 19 C -0.54 -13.46 8.25 -34.44 -0.28 -13.75 16 20 H 0.07 1.63 7.78 -52.49 -0.41 1.22 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 22 N -0.89 -23.12 10.69 55.43 0.59 -22.53 16 23 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.11 2.56 5.51 -2.52 -0.01 2.55 16 28 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 31 H 0.07 0.45 6.47 -51.93 -0.34 0.12 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.10 0.89 6.55 -51.93 -0.34 0.55 16 37 H 0.09 0.85 7.50 -51.93 -0.39 0.46 16 38 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.18 3.25 5.82 -52.49 -0.31 2.95 16 40 H 0.40 5.04 6.95 -40.82 -0.28 4.76 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 45 H 0.38 9.83 7.24 45.56 0.33 10.16 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 48 H 0.09 2.26 7.48 -51.93 -0.39 1.87 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -29.69 388.17 -9.52 -39.21 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -6.73 Total: 16.69 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.05 Total: 11.56 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -1.17 Total: -60.65 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.39 Total: -27.45 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.69 -9.52 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466715773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.244 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds