Wall clock time and date at job start Tue Mar 31 2020 21:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 110.99902 * 2 1 4 4 C 1.46899 * 110.99497 * 123.95163 * 2 1 3 5 5 C 1.53002 * 109.47012 * 169.99997 * 4 2 1 6 6 N 1.46497 * 109.47152 * 180.02562 * 5 4 2 7 7 N 1.40064 * 126.04532 * 270.15880 * 6 5 4 8 8 C 1.30849 * 108.37319 * 180.25079 * 7 6 5 9 9 C 1.39760 * 108.32029 * 359.77128 * 8 7 6 10 10 C 1.35255 * 126.04428 * 90.00128 * 6 5 4 11 11 N 1.39493 * 126.21556 * 0.02562 * 10 6 5 12 12 C 1.34778 * 119.99921 * 179.71318 * 11 10 6 13 13 O 1.21587 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64488 * 359.97438 * 14 12 11 16 16 C 1.54320 * 107.26701 * 178.99212 * 15 14 12 17 17 C 1.55153 * 102.94383 * 337.80525 * 16 15 14 18 18 O 1.42895 * 111.00660 * 277.38826 * 17 16 15 19 19 C 1.50702 * 111.00367 * 153.57571 * 17 16 15 20 20 H 1.08002 * 120.00299 * 3.18452 * 19 17 16 21 21 C 1.37884 * 119.99942 * 182.90010 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 C 1.47463 * 125.62945 * 179.97438 * 14 12 11 28 28 H 1.08997 * 109.47427 * 296.04761 * 1 2 3 29 29 H 1.09006 * 109.47084 * 56.04961 * 1 2 3 30 30 H 1.09002 * 109.47203 * 176.04487 * 1 2 3 31 31 H 1.09000 * 109.46923 * 183.95048 * 3 2 1 32 32 H 1.08993 * 109.47272 * 303.94894 * 3 2 1 33 33 H 1.08998 * 109.47202 * 63.95521 * 3 2 1 34 34 H 1.09001 * 109.47311 * 50.00091 * 4 2 1 35 35 H 1.08993 * 109.47470 * 290.00249 * 4 2 1 36 36 H 1.09001 * 109.47006 * 59.99907 * 5 4 2 37 37 H 1.09000 * 109.46777 * 299.99911 * 5 4 2 38 38 H 1.07999 * 125.83843 * 179.78291 * 8 7 6 39 39 H 1.07994 * 126.09034 * 179.97438 * 9 8 7 40 40 H 0.96998 * 120.00387 * 359.70967 * 11 10 6 41 41 H 1.09000 * 109.88086 * 59.57636 * 15 14 12 42 42 H 1.09003 * 109.87956 * 298.40624 * 15 14 12 43 43 H 1.09004 * 110.71836 * 219.43859 * 16 15 14 44 44 H 1.09006 * 110.72351 * 96.16930 * 16 15 14 45 45 H 0.96695 * 114.00567 * 176.81707 * 18 17 16 46 46 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.34826 * 85.23635 * 27 14 12 48 48 H 1.09002 * 110.40574 * 322.89852 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9705 6 7 4.0292 -1.7198 2.1047 7 7 4.5052 -1.1857 3.3089 8 6 4.8934 -2.1741 4.0735 9 6 4.6745 -3.3721 3.3878 10 6 4.1370 -3.0662 2.1754 11 7 3.7698 -3.9756 1.1834 12 6 3.9381 -5.2975 1.3854 13 8 4.4096 -5.6973 2.4323 14 7 3.5829 -6.1762 0.4271 15 6 3.0024 -5.8315 -0.8790 16 6 2.7846 -7.1525 -1.6465 17 6 3.7776 -8.1238 -0.9553 18 8 5.0958 -7.9718 -1.4855 19 6 3.3105 -9.5514 -1.0778 20 1 2.4181 -9.7811 -1.6412 21 6 4.0257 -10.5649 -0.4758 22 7 5.1123 -10.2851 0.2102 23 14 3.4509 -12.3351 -0.6342 24 1 3.4218 -12.7197 -2.0683 25 1 4.3856 -13.2264 0.0989 26 1 2.0883 -12.4667 -0.0586 27 6 3.7122 -7.6425 0.5156 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9162 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5088 -1.7406 1.1757 35 1 1.7974 -0.2248 2.0628 36 1 3.9909 0.0193 0.9324 37 1 3.7023 -1.4967 0.0453 38 1 5.3113 -2.0801 5.0649 39 1 4.8933 -4.3641 3.7545 40 1 3.3933 -3.6566 0.3483 41 1 3.6888 -5.1903 -1.4320 42 1 2.0486 -5.3230 -0.7382 43 1 3.0340 -7.0316 -2.7007 44 1 1.7587 -7.5019 -1.5295 45 1 5.7606 -8.5234 -1.0510 46 1 5.6153 -10.9981 0.6341 47 1 2.8435 -8.0701 1.0162 48 1 4.6266 -7.9122 1.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466715773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:21 Heat of formation + Delta-G solvation = 6.202470 kcal Electronic energy + Delta-G solvation = -30023.391332 eV Core-core repulsion = 25922.187830 eV Total energy + Delta-G solvation = -4101.203502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.61795 -41.15347 -39.18322 -38.67773 -36.20436 -35.92315 -34.38386 -34.17030 -32.00209 -30.13538 -29.70089 -29.42777 -28.53479 -26.99356 -25.56149 -24.58531 -22.84768 -22.53748 -21.71464 -21.38606 -20.56748 -19.55015 -19.05625 -18.34480 -17.27154 -17.10599 -16.91354 -16.55930 -16.55097 -16.22173 -16.05669 -15.56410 -15.39046 -14.96420 -14.80347 -14.70501 -14.62028 -14.44906 -13.90753 -13.80089 -13.50202 -13.43160 -13.33470 -13.01768 -12.80375 -12.70378 -12.60757 -12.54688 -12.32514 -12.28550 -12.19933 -12.10023 -12.06493 -11.77784 -11.25198 -11.13937 -10.63533 -10.33335 -10.05103 -9.63886 -9.47676 -9.04045 -8.23517 -6.40133 0.71757 0.83751 1.45692 1.46758 1.54332 1.72820 1.77853 2.17442 2.39768 2.75858 2.98726 3.02950 3.46758 3.75064 3.78273 3.97735 4.01364 4.14007 4.17752 4.23695 4.27410 4.34898 4.44874 4.54540 4.57025 4.60488 4.62732 4.71821 4.75205 4.75509 4.91121 4.99608 5.01368 5.04314 5.08766 5.09625 5.31757 5.38235 5.47055 5.75297 5.77063 5.78462 5.85611 5.93510 6.04998 6.10133 6.62730 6.68041 6.85940 7.30167 7.32208 7.38333 8.81603 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.002779 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.717763 B =10072.798904 C =11291.463785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.015 3.985 4 C 0.048 3.952 5 C 0.132 3.868 6 N -0.383 5.383 7 N -0.310 5.310 8 C 0.068 3.932 9 C -0.312 4.312 10 C 0.327 3.673 11 N -0.644 5.644 12 C 0.720 3.280 13 O -0.602 6.602 14 N -0.621 5.621 15 C 0.100 3.900 16 C -0.109 4.109 17 C 0.233 3.767 18 O -0.589 6.589 19 C -0.555 4.555 20 H 0.071 0.929 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.127 3.873 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.215 0.785 39 H 0.149 0.851 40 H 0.420 0.580 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.375 0.625 46 H 0.270 0.730 47 H 0.048 0.952 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 20.784 -1.486 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.132 4.132 4 C -0.082 4.082 5 C 0.011 3.989 6 N -0.172 5.172 7 N -0.132 5.132 8 C -0.118 4.118 9 C -0.344 4.344 10 C 0.106 3.894 11 N -0.295 5.295 12 C 0.422 3.578 13 O -0.481 6.481 14 N -0.357 5.357 15 C -0.021 4.021 16 C -0.147 4.147 17 C 0.192 3.808 18 O -0.397 6.397 19 C -0.593 4.593 20 H 0.089 0.911 21 C -0.174 4.174 22 N -0.555 5.555 23 Si 0.788 3.212 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.195 1.195 27 C 0.004 3.996 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.231 0.769 39 H 0.166 0.834 40 H 0.258 0.742 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.225 0.775 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.721 21.941 -1.691 23.321 hybrid contribution -0.031 -2.075 1.067 2.333 sum -7.752 19.866 -0.624 21.334 Atomic orbital electron populations 1.22453 0.85754 1.02995 1.01273 1.61953 1.09231 1.14835 1.41203 1.22571 1.01423 0.87908 1.01342 1.22348 0.94072 0.99174 0.92585 1.21826 0.94044 0.98168 0.84879 1.48666 1.52287 1.01160 1.15095 1.77363 1.21919 1.21626 0.92319 1.24160 0.97819 0.89056 1.00715 1.21645 1.16264 1.01105 0.95406 1.17721 0.98987 0.81992 0.90735 1.41621 1.66003 1.03199 1.18705 1.15277 0.79306 0.80012 0.83254 1.90838 1.51756 1.78027 1.27450 1.47843 1.64413 1.07119 1.16315 1.22259 0.98710 0.98653 0.82522 1.22597 0.99424 0.92785 0.99884 1.19858 0.81228 0.92816 0.86899 1.86072 1.20250 1.69139 1.64229 1.21781 1.11718 0.91930 1.33910 0.91086 1.25813 0.94696 1.03468 0.93461 1.69758 1.17226 1.34629 1.33862 0.85535 0.78184 0.79112 0.78357 1.19499 1.21343 1.19499 1.22830 0.99703 0.75500 1.01607 0.95616 0.89569 0.91070 0.90594 0.89705 0.95532 0.90916 0.94691 0.87190 0.87420 0.76864 0.83356 0.74204 0.90527 0.88725 0.89457 0.88978 0.77510 0.92094 0.93398 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.49 16 2 N -0.55 -7.48 5.02 -948.87 -4.76 -12.24 16 3 C 0.02 0.17 9.32 127.69 1.19 1.36 16 4 C 0.05 0.79 5.28 86.30 0.46 1.24 16 5 C 0.13 2.31 6.18 86.38 0.53 2.85 16 6 N -0.38 -9.73 3.62 -344.98 -1.25 -10.98 16 7 N -0.31 -8.49 12.56 -57.09 -0.72 -9.20 16 8 C 0.07 1.83 12.01 85.21 1.02 2.86 16 9 C -0.31 -10.41 9.65 22.14 0.21 -10.19 16 10 C 0.33 9.99 7.66 131.31 1.01 11.00 16 11 N -0.64 -18.99 5.38 -322.30 -1.73 -20.72 16 12 C 0.72 27.98 8.45 179.05 1.51 29.49 16 13 O -0.60 -28.26 13.72 -3.99 -0.05 -28.32 16 14 N -0.62 -23.80 3.33 -829.66 -2.76 -26.56 16 15 C 0.10 2.94 6.15 86.73 0.53 3.47 16 16 C -0.11 -3.79 6.13 31.78 0.19 -3.59 16 17 C 0.23 10.70 0.88 -10.15 -0.01 10.69 16 18 O -0.59 -29.25 13.17 -148.98 -1.96 -31.22 16 19 C -0.56 -27.72 8.25 25.60 0.21 -27.51 16 20 H 0.07 3.40 7.78 -2.91 -0.02 3.38 16 21 C 0.03 1.36 5.29 84.66 0.45 1.80 16 22 N -0.92 -48.88 10.69 21.45 0.23 -48.65 16 23 Si 0.96 40.79 29.54 68.60 2.03 42.81 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 C 0.13 5.94 5.51 86.84 0.48 6.42 16 28 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.09 0.77 8.12 -2.38 -0.02 0.75 16 30 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.08 0.75 6.47 -2.39 -0.02 0.74 16 32 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 1.30 8.06 -2.39 -0.02 1.28 16 35 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 36 H 0.11 1.70 6.55 -2.39 -0.02 1.69 16 37 H 0.11 1.61 7.50 -2.39 -0.02 1.59 16 38 H 0.21 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.15 5.82 5.82 -2.91 -0.02 5.80 16 40 H 0.42 9.35 6.95 -92.71 -0.64 8.71 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 44 H 0.09 2.94 8.03 -2.38 -0.02 2.92 16 45 H 0.38 19.87 7.24 -74.06 -0.54 19.33 16 46 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 47 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 48 H 0.05 2.53 7.48 -2.39 -0.02 2.52 16 Total: -1.00 -66.16 388.17 -2.16 -68.32 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.19 Total: 45.38 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 9.02 Total: 31.36 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -10.99 Total: -128.35 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -2.02 Total: -59.53 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -66.16 -2.16 -68.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466715773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.526 kcal (2) G-P(sol) polarization free energy of solvation -66.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds