Wall clock time and date at job start Tue Mar 31 2020 20:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47141 * 2 1 4 4 C 1.42900 * 113.99886 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.46997 * 180.02562 * 4 3 2 6 6 N 1.31786 * 119.07908 * 269.97968 * 5 4 3 7 7 C 1.32555 * 121.00860 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.40009 * 179.97438 * 7 6 5 9 9 C 1.38117 * 119.19452 * 0.02562 * 7 6 5 10 10 C 1.39623 * 118.33799 * 0.02562 * 9 7 6 11 11 N 1.38536 * 120.53176 * 180.25286 * 10 9 7 12 12 N 1.40101 * 120.00066 * 179.72299 * 11 10 9 13 13 C 1.34778 * 120.00305 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00333 * 179.97438 * 13 12 11 15 15 N 1.34783 * 119.99472 * 0.02562 * 13 12 11 16 16 C 1.46505 * 119.99517 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47436 * 180.02562 * 17 16 15 19 19 C 1.50692 * 109.47366 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00228 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00508 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99664 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47295 * 90.00228 * 23 21 19 25 25 H 1.48506 * 109.46974 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.46928 * 329.99971 * 23 21 19 27 27 N 1.31740 * 119.08311 * 89.99909 * 5 4 3 28 28 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46928 * 299.99858 * 1 2 3 30 30 H 1.08997 * 109.47434 * 60.00098 * 1 2 3 31 31 H 1.08998 * 109.47531 * 239.99733 * 2 1 3 32 32 H 1.09005 * 109.47274 * 119.99629 * 2 1 3 33 33 H 1.08996 * 109.47069 * 60.00232 * 4 3 2 34 34 H 1.09001 * 109.47599 * 299.99658 * 4 3 2 35 35 H 1.08997 * 109.47180 * 90.00138 * 8 7 6 36 36 H 1.08999 * 109.47022 * 209.99956 * 8 7 6 37 37 H 1.08999 * 109.47144 * 330.00255 * 8 7 6 38 38 H 1.08002 * 120.82941 * 180.02562 * 9 7 6 39 39 H 0.97002 * 120.00289 * 359.72549 * 11 10 9 40 40 H 0.97002 * 119.99645 * 0.02562 * 12 11 10 41 41 H 0.96995 * 120.00420 * 359.97438 * 15 13 12 42 42 H 1.09004 * 109.47149 * 299.99985 * 16 15 13 43 43 H 1.09006 * 109.47157 * 60.00073 * 16 15 13 44 44 H 1.09002 * 109.46895 * 300.00241 * 17 16 15 45 45 H 1.08997 * 109.46972 * 59.99914 * 17 16 15 46 46 H 1.09004 * 109.46770 * 300.00316 * 18 17 16 47 47 H 1.09000 * 109.46972 * 59.99468 * 18 17 16 48 48 H 0.96993 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 7 3.9854 3.5353 -1.1503 7 6 4.3266 4.8154 -1.1945 8 6 4.5133 5.5097 -2.5189 9 6 4.5098 5.5050 -0.0118 10 6 4.3271 4.8190 1.1905 11 7 4.4939 5.4676 2.4032 12 7 4.3021 4.7700 3.6029 13 6 4.4649 5.4008 4.7828 14 8 4.2980 4.7955 5.8239 15 7 4.8118 6.7029 4.8084 16 6 4.9883 7.3888 6.0909 17 6 5.3788 8.8467 5.8401 18 6 5.5637 9.5628 7.1794 19 6 5.9477 10.9989 6.9324 20 1 6.0500 11.3643 5.9213 21 6 6.1694 11.8463 7.9972 22 7 6.5050 13.0995 7.7817 23 14 5.9930 11.2142 9.7462 24 1 7.2989 10.6855 10.2156 25 1 5.5611 12.3246 10.6327 26 1 4.9787 10.1301 9.7808 27 7 3.9841 3.5346 1.1527 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8333 0.9768 0.8908 35 1 3.5654 5.9416 -2.8396 36 1 5.2557 6.3007 -2.4130 37 1 4.8540 4.7888 -3.2621 38 1 4.7875 6.5487 -0.0170 39 1 4.7436 6.4047 2.4217 40 1 4.0527 3.8327 3.5844 41 1 4.9447 7.1859 3.9778 42 1 4.0551 7.3537 6.6531 43 1 5.7751 6.8953 6.6616 44 1 6.3121 8.8813 5.2781 45 1 4.5924 9.3404 5.2693 46 1 4.6306 9.5281 7.7418 47 1 6.3503 9.0690 7.7499 48 1 6.6605 13.6956 8.5308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468678674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:24 Heat of formation + Delta-G solvation = 3.227052 kcal Electronic energy + Delta-G solvation = -27738.611732 eV Core-core repulsion = 23637.279206 eV Total energy + Delta-G solvation = -4101.332526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51141 -40.17886 -38.40700 -37.15398 -35.70084 -34.59151 -33.64926 -33.16996 -31.68373 -31.37552 -30.19151 -28.59060 -27.58390 -27.09763 -23.46258 -23.19532 -23.06495 -22.44930 -21.10909 -20.57925 -19.16448 -18.73751 -17.37723 -17.21799 -16.83552 -16.31602 -16.21689 -15.96252 -15.84130 -15.37096 -15.31093 -15.18383 -14.45420 -14.41755 -13.97143 -13.86307 -13.65715 -13.60891 -13.10770 -12.79246 -12.74646 -12.69589 -12.52240 -12.08560 -11.98239 -11.81011 -11.63421 -11.16496 -11.10960 -10.95296 -10.62882 -10.55303 -10.11482 -10.06638 -9.95069 -9.92307 -9.75812 -9.63976 -9.28205 -9.09496 -8.59558 -8.09432 -6.10420 -4.09579 0.52459 0.92020 1.52323 2.72874 2.94117 3.03816 3.28561 3.36478 3.40383 3.48200 3.65624 3.90587 4.15447 4.40857 4.53097 4.63647 4.70373 4.76202 4.86420 4.90841 4.95955 4.99830 5.12515 5.15519 5.23696 5.29127 5.33957 5.47361 5.50587 5.52792 5.57877 5.72539 5.72824 5.92349 6.16028 6.18821 6.36415 6.43471 6.62067 6.69987 6.71056 6.85297 7.05918 7.16574 7.30146 7.70764 7.77514 7.96464 8.36363 8.45402 8.92756 9.51677 11.02664 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.001803 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.548505 B =15525.809362 C =16863.610083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.380 6.380 4 C 0.135 3.865 5 C 0.372 3.628 6 N -0.544 5.544 7 C 0.210 3.790 8 C -0.106 4.106 9 C -0.281 4.281 10 C 0.445 3.555 11 N -0.508 5.508 12 N -0.530 5.530 13 C 0.710 3.290 14 O -0.572 6.572 15 N -0.739 5.739 16 C 0.130 3.870 17 C -0.114 4.114 18 C -0.011 4.011 19 C -0.524 4.524 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.902 5.902 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.264 1.264 27 N -0.566 5.566 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.435 0.565 40 H 0.442 0.558 41 H 0.389 0.611 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.015 0.985 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -23.689 -22.606 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.298 6.298 4 C 0.057 3.943 5 C 0.102 3.898 6 N -0.266 5.266 7 C 0.067 3.933 8 C -0.163 4.163 9 C -0.311 4.311 10 C 0.201 3.799 11 N -0.240 5.240 12 N -0.287 5.287 13 C 0.409 3.591 14 O -0.445 6.445 15 N -0.395 5.395 16 C 0.007 3.993 17 C -0.152 4.152 18 C -0.049 4.049 19 C -0.562 4.562 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 N -0.293 5.293 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.167 0.833 39 H 0.280 0.720 40 H 0.288 0.712 41 H 0.223 0.777 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.978 -24.637 -21.437 33.395 hybrid contribution 0.466 0.862 0.644 1.172 sum -6.513 -23.775 -20.793 32.249 Atomic orbital electron populations 1.21743 0.93487 1.02352 1.03321 1.22508 0.95779 0.83045 1.00387 1.87937 1.19228 1.27119 1.95541 1.20889 0.82817 0.88270 1.02355 1.22215 0.89443 0.95628 0.82493 1.68071 1.18760 1.10187 1.29541 1.21382 0.87574 0.88987 0.95345 1.20785 1.03407 1.00166 0.91938 1.21822 1.14574 1.03234 0.91424 1.18231 0.88387 0.88876 0.84445 1.43120 1.75194 1.10842 0.94880 1.44627 1.76798 1.13067 0.94168 1.15786 0.78753 0.82393 0.82192 1.91031 1.59167 1.65925 1.28424 1.45382 1.74239 1.09052 1.10798 1.21635 1.01697 0.93248 0.82739 1.21726 1.00977 0.91144 1.01328 1.19497 0.96828 0.96263 0.92285 1.21073 1.47155 0.92898 0.95044 0.91020 1.25024 0.94405 0.94722 0.99264 1.69903 1.47566 1.04907 1.31699 0.86780 0.79061 0.78795 0.84695 1.20234 1.21334 1.18865 1.67530 1.21887 1.08336 1.31564 0.90892 0.91738 0.91803 0.93034 0.92980 0.90332 0.90504 0.89475 0.89920 0.89805 0.83290 0.72038 0.71224 0.77693 0.91489 0.91506 0.92079 0.92042 0.96202 0.96640 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.38 -3.78 10.33 -35.23 -0.36 -4.15 16 4 C 0.14 1.17 6.37 36.01 0.23 1.40 16 5 C 0.37 4.06 7.27 -157.24 -1.14 2.92 16 6 N -0.54 -5.76 10.27 -7.07 -0.07 -5.83 16 7 C 0.21 1.80 6.82 -82.32 -0.56 1.23 16 8 C -0.11 -0.54 10.21 36.01 0.37 -0.17 16 9 C -0.28 -2.25 9.71 -39.11 -0.38 -2.63 16 10 C 0.44 4.44 7.64 -154.78 -1.18 3.26 16 11 N -0.51 -4.67 6.41 31.24 0.20 -4.47 16 12 N -0.53 -6.18 6.30 27.63 0.17 -6.01 16 13 C 0.71 10.23 8.68 -86.91 -0.75 9.48 16 14 O -0.57 -10.55 17.18 5.30 0.09 -10.46 16 15 N -0.74 -9.59 5.52 -65.22 -0.36 -9.95 16 16 C 0.13 2.05 5.67 -4.04 -0.02 2.02 16 17 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 18 C -0.01 -0.24 4.04 -27.89 -0.11 -0.36 16 19 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 20 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 23 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 27 N -0.57 -6.42 9.41 -9.97 -0.09 -6.51 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.43 2.96 6.72 -182.59 -1.23 1.74 16 40 H 0.44 5.27 8.09 -182.59 -1.48 3.80 16 41 H 0.39 3.86 6.39 -40.82 -0.26 3.60 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 47 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -35.53 405.60 -11.37 -46.89 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -9.66 Total: 1.95 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -3.50 Total: 2.19 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.62 Total: -59.32 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.27 Total: -14.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.53 -11.37 -46.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468678674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.122 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds