Wall clock time and date at job start Tue Mar 31 2020 20:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47141 * 2 1 4 4 C 1.42900 * 113.99886 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.46997 * 180.02562 * 4 3 2 6 6 N 1.31786 * 119.07908 * 269.97968 * 5 4 3 7 7 C 1.32555 * 121.00860 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.40009 * 179.97438 * 7 6 5 9 9 C 1.38117 * 119.19452 * 0.02562 * 7 6 5 10 10 C 1.39623 * 118.33799 * 0.02562 * 9 7 6 11 11 N 1.38536 * 120.53176 * 180.25286 * 10 9 7 12 12 N 1.40101 * 120.00066 * 179.72299 * 11 10 9 13 13 C 1.34778 * 120.00305 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00333 * 179.97438 * 13 12 11 15 15 N 1.34783 * 119.99472 * 0.02562 * 13 12 11 16 16 C 1.46505 * 119.99517 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47436 * 180.02562 * 17 16 15 19 19 C 1.50692 * 109.47366 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00228 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00508 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99664 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47295 * 90.00228 * 23 21 19 25 25 H 1.48506 * 109.46974 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.46928 * 329.99971 * 23 21 19 27 27 N 1.31740 * 119.08311 * 89.99909 * 5 4 3 28 28 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46928 * 299.99858 * 1 2 3 30 30 H 1.08997 * 109.47434 * 60.00098 * 1 2 3 31 31 H 1.08998 * 109.47531 * 239.99733 * 2 1 3 32 32 H 1.09005 * 109.47274 * 119.99629 * 2 1 3 33 33 H 1.08996 * 109.47069 * 60.00232 * 4 3 2 34 34 H 1.09001 * 109.47599 * 299.99658 * 4 3 2 35 35 H 1.08997 * 109.47180 * 90.00138 * 8 7 6 36 36 H 1.08999 * 109.47022 * 209.99956 * 8 7 6 37 37 H 1.08999 * 109.47144 * 330.00255 * 8 7 6 38 38 H 1.08002 * 120.82941 * 180.02562 * 9 7 6 39 39 H 0.97002 * 120.00289 * 359.72549 * 11 10 9 40 40 H 0.97002 * 119.99645 * 0.02562 * 12 11 10 41 41 H 0.96995 * 120.00420 * 359.97438 * 15 13 12 42 42 H 1.09004 * 109.47149 * 299.99985 * 16 15 13 43 43 H 1.09006 * 109.47157 * 60.00073 * 16 15 13 44 44 H 1.09002 * 109.46895 * 300.00241 * 17 16 15 45 45 H 1.08997 * 109.46972 * 59.99914 * 17 16 15 46 46 H 1.09004 * 109.46770 * 300.00316 * 18 17 16 47 47 H 1.09000 * 109.46972 * 59.99468 * 18 17 16 48 48 H 0.96993 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 7 3.9854 3.5353 -1.1503 7 6 4.3266 4.8154 -1.1945 8 6 4.5133 5.5097 -2.5189 9 6 4.5098 5.5050 -0.0118 10 6 4.3271 4.8190 1.1905 11 7 4.4939 5.4676 2.4032 12 7 4.3021 4.7700 3.6029 13 6 4.4649 5.4008 4.7828 14 8 4.2980 4.7955 5.8239 15 7 4.8118 6.7029 4.8084 16 6 4.9883 7.3888 6.0909 17 6 5.3788 8.8467 5.8401 18 6 5.5637 9.5628 7.1794 19 6 5.9477 10.9989 6.9324 20 1 6.0500 11.3643 5.9213 21 6 6.1694 11.8463 7.9972 22 7 6.5050 13.0995 7.7817 23 14 5.9930 11.2142 9.7462 24 1 7.2989 10.6855 10.2156 25 1 5.5611 12.3246 10.6327 26 1 4.9787 10.1301 9.7808 27 7 3.9841 3.5346 1.1527 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8333 0.9768 0.8908 35 1 3.5654 5.9416 -2.8396 36 1 5.2557 6.3007 -2.4130 37 1 4.8540 4.7888 -3.2621 38 1 4.7875 6.5487 -0.0170 39 1 4.7436 6.4047 2.4217 40 1 4.0527 3.8327 3.5844 41 1 4.9447 7.1859 3.9778 42 1 4.0551 7.3537 6.6531 43 1 5.7751 6.8953 6.6616 44 1 6.3121 8.8813 5.2781 45 1 4.5924 9.3404 5.2693 46 1 4.6306 9.5281 7.7418 47 1 6.3503 9.0690 7.7499 48 1 6.6605 13.6956 8.5308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468678674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:22 Heat of formation + Delta-G solvation = -22.098651 kcal Electronic energy + Delta-G solvation = -27739.709937 eV Core-core repulsion = 23637.279206 eV Total energy + Delta-G solvation = -4102.430731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23395 -41.26461 -39.04453 -38.03997 -37.09828 -35.32420 -35.09995 -34.31738 -33.11280 -32.20442 -30.96756 -29.22184 -28.85638 -28.10995 -24.90152 -23.97327 -23.69786 -23.16341 -22.29486 -22.05368 -20.20149 -19.63413 -18.86056 -18.11888 -17.85056 -17.23536 -17.08268 -16.83852 -16.55654 -16.40003 -16.18440 -16.05789 -15.99429 -15.71102 -15.32937 -14.76587 -14.45111 -14.29736 -14.16897 -13.83218 -13.75286 -13.61919 -13.29553 -13.10403 -13.06140 -12.74461 -12.70681 -12.32733 -12.18306 -12.05032 -11.81297 -11.76831 -11.60773 -11.56167 -11.38702 -11.31689 -10.75086 -10.67418 -10.65037 -10.38365 -10.25053 -8.91832 -8.28432 -6.31981 -0.15635 0.20803 0.67825 1.37637 1.39767 1.50869 1.77031 1.87283 2.30218 2.37049 2.76041 2.96591 3.07740 3.28581 3.51470 3.84286 4.03804 4.09259 4.16064 4.21450 4.23324 4.26262 4.37454 4.45121 4.49528 4.50966 4.58208 4.80035 4.81126 4.84706 4.89762 4.91762 4.94258 5.02797 5.04384 5.18078 5.25556 5.27586 5.46946 5.49392 5.57071 5.63912 5.69626 5.95115 6.14198 6.27170 6.28444 6.76246 6.90631 7.16712 7.28721 7.32957 8.87689 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.001803 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.548505 B =15525.809362 C =16863.610083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.407 6.407 4 C 0.135 3.865 5 C 0.353 3.647 6 N -0.560 5.560 7 C 0.196 3.804 8 C -0.102 4.102 9 C -0.272 4.272 10 C 0.428 3.572 11 N -0.501 5.501 12 N -0.522 5.522 13 C 0.711 3.289 14 O -0.615 6.615 15 N -0.726 5.726 16 C 0.143 3.857 17 C -0.100 4.100 18 C -0.013 4.013 19 C -0.529 4.529 20 H 0.040 0.960 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.945 3.055 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.247 1.247 27 N -0.587 5.587 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.183 0.817 39 H 0.446 0.554 40 H 0.441 0.559 41 H 0.406 0.594 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.021 0.979 47 H 0.021 0.979 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -24.701 -23.373 34.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.326 6.326 4 C 0.057 3.943 5 C 0.083 3.917 6 N -0.281 5.281 7 C 0.054 3.946 8 C -0.159 4.159 9 C -0.300 4.300 10 C 0.184 3.816 11 N -0.236 5.236 12 N -0.276 5.276 13 C 0.410 3.590 14 O -0.492 6.492 15 N -0.383 5.383 16 C 0.019 3.981 17 C -0.138 4.138 18 C -0.051 4.051 19 C -0.567 4.567 20 H 0.058 0.942 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.171 1.171 27 N -0.314 5.314 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.200 0.800 39 H 0.293 0.707 40 H 0.287 0.713 41 H 0.243 0.757 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.070 -25.652 -22.279 34.704 hybrid contribution 0.491 1.189 0.700 1.464 sum -6.579 -24.463 -21.578 33.277 Atomic orbital electron populations 1.21772 0.93198 1.03487 1.02336 1.22717 0.96063 0.81970 1.01584 1.87896 1.19897 1.29080 1.95750 1.20982 0.82469 0.87532 1.03308 1.22613 0.89911 0.96580 0.82579 1.68128 1.19107 1.11379 1.29506 1.22030 0.86926 0.88606 0.97030 1.20888 1.04537 1.00455 0.90029 1.22167 1.12997 1.04584 0.90242 1.18536 0.88966 0.88978 0.85087 1.43073 1.75722 1.11088 0.93696 1.44354 1.75657 1.13004 0.94600 1.15751 0.78591 0.82403 0.82215 1.91000 1.61011 1.66916 1.30297 1.45039 1.73889 1.08671 1.10744 1.21290 1.01147 0.92011 0.83689 1.21491 1.01712 0.91843 0.98765 1.19469 0.96736 0.93803 0.95122 1.21464 1.46203 0.95413 0.93662 0.94182 1.25955 0.94340 0.94854 1.03998 1.70048 1.49450 1.06449 1.33085 0.85739 0.79724 0.78587 0.79102 1.19354 1.21221 1.17068 1.67515 1.22540 1.09249 1.32071 0.88707 0.92994 0.92453 0.91480 0.92072 0.88999 0.89833 0.88569 0.87654 0.89843 0.80013 0.70706 0.71302 0.75732 0.92152 0.92004 0.91347 0.91427 0.96049 0.96113 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.41 -8.07 10.33 -148.98 -1.54 -9.61 16 4 C 0.14 2.32 6.37 71.24 0.45 2.77 16 5 C 0.35 7.57 7.27 138.77 1.01 8.58 16 6 N -0.56 -11.39 10.27 -176.28 -1.81 -13.20 16 7 C 0.20 3.01 6.82 42.42 0.29 3.30 16 8 C -0.10 -0.79 10.21 71.24 0.73 -0.06 16 9 C -0.27 -3.73 9.71 22.58 0.22 -3.51 16 10 C 0.43 7.93 7.64 133.16 1.02 8.94 16 11 N -0.50 -8.33 6.41 -55.09 -0.35 -8.68 16 12 N -0.52 -11.63 6.30 -184.75 -1.16 -12.80 16 13 C 0.71 19.69 8.68 179.05 1.55 21.24 16 14 O -0.62 -22.40 17.18 -3.97 -0.07 -22.47 16 15 N -0.73 -17.47 5.52 -478.51 -2.64 -20.11 16 16 C 0.14 4.24 5.67 86.38 0.49 4.73 16 17 C -0.10 -3.35 5.27 30.59 0.16 -3.18 16 18 C -0.01 -0.58 4.04 29.84 0.12 -0.46 16 19 C -0.53 -29.16 9.66 25.60 0.25 -28.92 16 20 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 21 C 0.01 0.31 5.47 84.66 0.46 0.78 16 22 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 23 Si 0.94 43.65 27.47 68.60 1.88 45.53 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 27 N -0.59 -12.99 9.41 -185.44 -1.74 -14.74 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.34 8.09 -2.39 -0.02 0.32 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.45 4.97 6.72 -213.32 -1.43 3.54 16 40 H 0.44 10.35 8.09 -213.32 -1.73 8.63 16 41 H 0.41 7.03 6.39 -92.71 -0.59 6.43 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 47 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 48 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -77.76 405.60 -1.97 -79.73 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -2.81 Total: 20.03 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.97 Total: 14.38 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -7.41 Total: -127.59 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.61 Total: -32.08 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -77.76 -1.97 -79.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468678674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.632 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds