Wall clock time and date at job start Tue Mar 31 2020 21:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00320 * 2 1 4 4 C 1.53000 * 109.47197 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47073 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47059 * 180.02562 * 5 4 3 7 7 C 1.34959 * 125.97454 * 124.72020 * 6 5 4 8 8 C 1.35253 * 107.85309 * 179.83882 * 7 6 5 9 9 C 1.40390 * 107.86866 * 0.41974 * 8 7 6 10 10 N 1.40199 * 125.97211 * 179.75996 * 9 8 7 11 11 C 1.34776 * 119.99850 * 0.02562 * 10 9 8 12 12 O 1.21589 * 120.00206 * 355.03887 * 11 10 9 13 13 N 1.34778 * 120.00041 * 175.04474 * 11 10 9 14 14 C 1.46971 * 120.59286 * 4.71239 * 13 11 10 15 15 C 1.53809 * 108.39793 * 124.75972 * 14 13 11 16 16 N 1.46962 * 108.57855 * 49.63529 * 15 14 13 17 17 C 1.36938 * 120.59177 * 124.62879 * 16 15 14 18 18 H 1.07997 * 119.99847 * 214.95356 * 17 16 15 19 19 C 1.38817 * 120.00157 * 34.94538 * 17 16 15 20 20 N 1.31614 * 119.99794 * 15.44150 * 19 17 16 21 21 Si 1.86805 * 120.00032 * 195.43884 * 19 17 16 22 22 H 1.48505 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46859 * 120.00231 * 21 19 17 24 24 H 1.48498 * 109.46787 * 240.00250 * 21 19 17 25 25 C 1.46959 * 118.81287 * 304.64316 * 16 15 14 26 26 C 1.46958 * 120.59400 * 184.98940 * 13 11 10 27 27 N 1.31205 * 108.05857 * 359.74033 * 9 8 7 28 28 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 300.00073 * 1 2 3 30 30 H 1.09005 * 109.46795 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.47128 * 60.00063 * 3 2 1 32 32 H 1.08995 * 109.47440 * 299.99876 * 3 2 1 33 33 H 1.09000 * 109.46787 * 60.00151 * 4 3 2 34 34 H 1.09002 * 109.47463 * 300.00413 * 4 3 2 35 35 H 1.08992 * 109.47014 * 300.00036 * 5 4 3 36 36 H 1.09000 * 109.47190 * 60.00399 * 5 4 3 37 37 H 1.07996 * 126.07353 * 359.97438 * 7 6 5 38 38 H 1.08003 * 126.06284 * 180.16317 * 8 7 6 39 39 H 0.97002 * 119.99946 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.60381 * 244.54438 * 14 13 11 41 41 H 1.08998 * 109.60873 * 5.04681 * 14 13 11 42 42 H 1.08999 * 109.74230 * 289.84565 * 15 14 13 43 43 H 1.09000 * 109.53197 * 169.30347 * 15 14 13 44 44 H 0.97000 * 119.99803 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.61565 * 295.48130 * 25 16 15 46 46 H 1.09000 * 109.74872 * 175.05684 * 25 16 15 47 47 H 1.09000 * 109.61182 * 354.94912 * 26 13 11 48 48 H 1.09006 * 109.60983 * 115.28644 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4665 0.0000 7 6 6.4577 3.0236 -0.8980 8 6 7.7204 2.6864 -0.5501 9 6 7.6507 1.8841 0.5999 10 7 8.7406 1.3214 1.2788 11 6 9.9948 1.5355 0.8343 12 8 10.1766 2.1401 -0.2049 13 7 11.0476 1.0792 1.5415 14 6 10.8422 0.2589 2.7435 15 6 11.6205 -1.0567 2.5722 16 7 12.9941 -0.7376 2.1586 17 6 14.0637 -1.2004 2.8777 18 1 14.9521 -0.5940 2.9749 19 6 14.0060 -2.4489 3.4818 20 7 13.0753 -3.3092 3.1270 21 14 15.2493 -2.9078 4.7983 22 1 16.1836 -1.7738 5.0137 23 1 14.5384 -3.2106 6.0665 24 1 16.0138 -4.1036 4.3617 25 6 13.1993 0.0873 0.9598 26 6 12.4212 1.3982 1.1279 27 7 6.3872 1.7534 0.9286 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8574 0.6435 -0.8891 34 1 3.8568 0.6437 0.8908 35 1 3.8366 3.1226 -0.8904 36 1 3.8360 3.1238 0.8895 37 1 6.1721 3.6326 -1.7429 38 1 8.6221 2.9786 -1.0677 39 1 8.5921 0.7786 2.0689 40 1 11.2107 0.7939 3.6187 41 1 9.7802 0.0446 2.8630 42 1 11.1421 -1.6708 1.8093 43 1 11.6394 -1.5950 3.5198 44 1 13.0352 -4.1817 3.5489 45 1 12.8334 -0.4453 0.0821 46 1 14.2607 0.3047 0.8396 47 1 12.4023 1.9365 0.1803 48 1 12.8986 2.0150 1.8894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476179972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:14 Heat of formation + Delta-G solvation = 52.286864 kcal Electronic energy + Delta-G solvation = -28777.572112 eV Core-core repulsion = 24678.366979 eV Total energy + Delta-G solvation = -4099.205133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.32272 -39.87446 -38.41981 -37.01019 -35.35436 -34.20361 -33.71663 -31.39701 -30.47337 -30.09926 -29.87815 -27.34616 -26.81817 -25.18062 -23.80242 -22.99923 -22.32731 -21.76657 -21.01478 -20.09435 -19.00102 -18.00615 -17.46989 -16.80968 -16.66238 -16.23088 -16.01635 -15.66506 -15.24526 -14.98355 -14.93680 -14.54627 -14.26483 -13.84276 -13.66290 -13.53045 -13.35253 -13.29544 -12.92260 -12.88661 -12.62379 -12.42450 -12.15302 -11.63524 -11.55614 -11.46198 -11.36624 -10.85924 -10.77654 -10.69847 -10.61048 -10.46683 -10.29745 -10.13239 -10.11519 -9.84693 -9.57686 -8.79317 -8.60761 -8.40531 -7.98078 -6.63477 -5.87247 -3.38268 1.85285 2.09447 2.80772 2.93072 3.32417 3.35028 3.41164 3.43297 3.65992 4.05268 4.29502 4.43222 4.55831 4.63278 4.72576 4.78681 4.86774 4.91420 4.95409 5.01713 5.21311 5.24409 5.31827 5.33472 5.60581 5.70224 5.72605 5.80351 5.83483 5.89204 5.90838 6.07236 6.15729 6.29702 6.31366 6.47785 6.69126 6.75454 6.90046 6.94934 7.02545 7.08255 7.22496 7.37075 7.72413 7.75969 8.20581 8.39312 8.76886 9.11292 9.72172 10.33729 11.20230 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002067 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.531973 B =13541.202382 C =14967.092839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.148 3.852 6 N -0.375 5.375 7 C 0.057 3.943 8 C -0.261 4.261 9 C 0.327 3.673 10 N -0.651 5.651 11 C 0.714 3.286 12 O -0.580 6.580 13 N -0.607 5.607 14 C 0.083 3.917 15 C 0.163 3.837 16 N -0.589 5.589 17 C -0.261 4.261 18 H 0.065 0.935 19 C 0.010 3.990 20 N -0.898 5.898 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.130 3.870 26 C 0.114 3.886 27 N -0.329 5.329 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.090 0.910 44 H 0.255 0.745 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.984 12.736 -5.882 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.160 5.160 7 C -0.088 4.088 8 C -0.292 4.292 9 C 0.070 3.930 10 N -0.305 5.305 11 C 0.415 3.585 12 O -0.458 6.458 13 N -0.343 5.343 14 C -0.042 4.042 15 C 0.036 3.964 16 N -0.311 5.311 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.190 4.190 20 N -0.541 5.541 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.003 3.997 26 C -0.011 4.011 27 N -0.159 5.159 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.191 0.809 38 H 0.191 0.809 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.595 12.333 -5.735 26.373 hybrid contribution 0.701 -0.200 0.612 0.952 sum -21.894 12.134 -5.123 25.551 Atomic orbital electron populations 1.22761 0.80758 1.03005 0.99974 1.87909 1.19888 1.27659 1.95411 1.22401 0.93390 0.85092 1.00351 1.21787 0.93077 0.96966 1.05422 1.21421 0.74707 0.97602 1.03703 1.48007 1.05549 1.40942 1.21463 1.22564 0.90029 1.00149 0.96082 1.21904 0.98408 1.08021 1.00831 1.18892 0.86532 0.94722 0.92849 1.41937 1.02701 1.54092 1.31749 1.15592 0.79679 0.79900 0.83317 1.90783 1.83986 1.47478 1.23543 1.47237 1.05181 1.53436 1.28400 1.22729 0.99362 0.95508 0.86604 1.21140 0.84225 0.90167 1.00882 1.43875 1.01761 1.59498 1.26009 1.19170 0.95827 0.97631 1.26462 0.91693 1.25259 0.98095 0.95054 1.00610 1.70025 1.35685 1.06241 1.42109 0.86229 0.80871 0.78166 0.81504 1.20075 1.21463 1.21604 1.21348 0.97823 0.90128 0.90358 1.22174 0.79427 0.99102 1.00358 1.77312 1.00756 1.22139 1.15717 0.89458 0.93960 0.94030 0.92931 0.93100 0.90387 0.89315 0.88540 0.89853 0.80872 0.80906 0.75029 0.91333 0.92049 0.95503 0.89226 0.93493 0.95726 0.91346 0.89661 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.57 10.70 -35.23 -0.38 -3.95 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -1.11 5.77 -26.73 -0.15 -1.26 16 5 C 0.15 1.06 6.51 -4.04 -0.03 1.03 16 6 N -0.38 -4.33 3.68 -61.38 -0.23 -4.56 16 7 C 0.06 0.63 11.44 -17.24 -0.20 0.44 16 8 C -0.26 -3.91 9.61 -39.84 -0.38 -4.29 16 9 C 0.33 5.28 8.11 -154.37 -1.25 4.03 16 10 N -0.65 -10.58 5.36 -15.51 -0.08 -10.67 16 11 C 0.71 13.06 8.26 -86.92 -0.72 12.35 16 12 O -0.58 -11.64 12.90 5.29 0.07 -11.57 16 13 N -0.61 -11.04 2.94 -177.94 -0.52 -11.56 16 14 C 0.08 1.46 6.59 -3.36 -0.02 1.44 16 15 C 0.16 3.65 5.48 -3.37 -0.02 3.63 16 16 N -0.59 -14.21 2.93 -171.77 -0.50 -14.71 16 17 C -0.26 -6.89 9.51 -15.06 -0.14 -7.04 16 18 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.01 0.26 4.90 -17.43 -0.09 0.18 16 20 N -0.90 -25.34 11.60 55.49 0.64 -24.69 16 21 Si 0.90 20.98 29.58 -169.99 -5.03 15.96 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.72 6.67 -3.60 -0.02 2.69 16 26 C 0.11 2.06 6.60 -3.60 -0.02 2.03 16 27 N -0.33 -4.92 12.43 31.44 0.39 -4.53 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.39 8.07 -51.93 -0.42 -0.03 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.17 2.83 5.93 -52.48 -0.31 2.52 16 39 H 0.41 5.98 6.29 -40.82 -0.26 5.73 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.92 5.61 -51.93 -0.29 0.62 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 2.19 6.46 -51.93 -0.34 1.86 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 47 H 0.09 1.50 6.99 -51.93 -0.36 1.13 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -33.56 389.06 -8.92 -42.48 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.43 Total: 4.76 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -1.71 Total: 17.18 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.30 Total: -70.72 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.31 Total: -15.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.56 -8.92 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.769 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds