Wall clock time and date at job start Tue Mar 31 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00320 * 2 1 4 4 C 1.53000 * 109.47197 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47073 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47059 * 180.02562 * 5 4 3 7 7 C 1.34959 * 125.97454 * 124.72020 * 6 5 4 8 8 C 1.35253 * 107.85309 * 179.83882 * 7 6 5 9 9 C 1.40390 * 107.86866 * 0.41974 * 8 7 6 10 10 N 1.40199 * 125.97211 * 179.75996 * 9 8 7 11 11 C 1.34776 * 119.99850 * 0.02562 * 10 9 8 12 12 O 1.21589 * 120.00206 * 355.03887 * 11 10 9 13 13 N 1.34778 * 120.00041 * 175.04474 * 11 10 9 14 14 C 1.46971 * 120.59286 * 4.71239 * 13 11 10 15 15 C 1.53809 * 108.39793 * 124.75972 * 14 13 11 16 16 N 1.46962 * 108.57855 * 49.63529 * 15 14 13 17 17 C 1.36938 * 120.59177 * 124.62879 * 16 15 14 18 18 H 1.07997 * 119.99847 * 214.95356 * 17 16 15 19 19 C 1.38817 * 120.00157 * 34.94538 * 17 16 15 20 20 N 1.31614 * 119.99794 * 15.44150 * 19 17 16 21 21 Si 1.86805 * 120.00032 * 195.43884 * 19 17 16 22 22 H 1.48505 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46859 * 120.00231 * 21 19 17 24 24 H 1.48498 * 109.46787 * 240.00250 * 21 19 17 25 25 C 1.46959 * 118.81287 * 304.64316 * 16 15 14 26 26 C 1.46958 * 120.59400 * 184.98940 * 13 11 10 27 27 N 1.31205 * 108.05857 * 359.74033 * 9 8 7 28 28 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 300.00073 * 1 2 3 30 30 H 1.09005 * 109.46795 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.47128 * 60.00063 * 3 2 1 32 32 H 1.08995 * 109.47440 * 299.99876 * 3 2 1 33 33 H 1.09000 * 109.46787 * 60.00151 * 4 3 2 34 34 H 1.09002 * 109.47463 * 300.00413 * 4 3 2 35 35 H 1.08992 * 109.47014 * 300.00036 * 5 4 3 36 36 H 1.09000 * 109.47190 * 60.00399 * 5 4 3 37 37 H 1.07996 * 126.07353 * 359.97438 * 7 6 5 38 38 H 1.08003 * 126.06284 * 180.16317 * 8 7 6 39 39 H 0.97002 * 119.99946 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.60381 * 244.54438 * 14 13 11 41 41 H 1.08998 * 109.60873 * 5.04681 * 14 13 11 42 42 H 1.08999 * 109.74230 * 289.84565 * 15 14 13 43 43 H 1.09000 * 109.53197 * 169.30347 * 15 14 13 44 44 H 0.97000 * 119.99803 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.61565 * 295.48130 * 25 16 15 46 46 H 1.09000 * 109.74872 * 175.05684 * 25 16 15 47 47 H 1.09000 * 109.61182 * 354.94912 * 26 13 11 48 48 H 1.09006 * 109.60983 * 115.28644 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4665 0.0000 7 6 6.4577 3.0236 -0.8980 8 6 7.7204 2.6864 -0.5501 9 6 7.6507 1.8841 0.5999 10 7 8.7406 1.3214 1.2788 11 6 9.9948 1.5355 0.8343 12 8 10.1766 2.1401 -0.2049 13 7 11.0476 1.0792 1.5415 14 6 10.8422 0.2589 2.7435 15 6 11.6205 -1.0567 2.5722 16 7 12.9941 -0.7376 2.1586 17 6 14.0637 -1.2004 2.8777 18 1 14.9521 -0.5940 2.9749 19 6 14.0060 -2.4489 3.4818 20 7 13.0753 -3.3092 3.1270 21 14 15.2493 -2.9078 4.7983 22 1 16.1836 -1.7738 5.0137 23 1 14.5384 -3.2106 6.0665 24 1 16.0138 -4.1036 4.3617 25 6 13.1993 0.0873 0.9598 26 6 12.4212 1.3982 1.1279 27 7 6.3872 1.7534 0.9286 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8574 0.6435 -0.8891 34 1 3.8568 0.6437 0.8908 35 1 3.8366 3.1226 -0.8904 36 1 3.8360 3.1238 0.8895 37 1 6.1721 3.6326 -1.7429 38 1 8.6221 2.9786 -1.0677 39 1 8.5921 0.7786 2.0689 40 1 11.2107 0.7939 3.6187 41 1 9.7802 0.0446 2.8630 42 1 11.1421 -1.6708 1.8093 43 1 11.6394 -1.5950 3.5198 44 1 13.0352 -4.1817 3.5489 45 1 12.8334 -0.4453 0.0821 46 1 14.2607 0.3047 0.8396 47 1 12.4023 1.9365 0.1803 48 1 12.8986 2.0150 1.8894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476179972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:12 Heat of formation + Delta-G solvation = 30.351846 kcal Electronic energy + Delta-G solvation = -28778.523285 eV Core-core repulsion = 24678.366979 eV Total energy + Delta-G solvation = -4100.156307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40274 -41.22777 -38.98575 -38.60953 -36.41260 -35.70178 -34.95228 -33.13992 -31.93359 -31.32968 -30.83747 -28.72728 -27.71908 -26.01928 -25.42521 -24.56797 -23.39108 -22.80839 -22.14653 -21.37890 -20.44557 -19.48078 -18.46606 -18.01959 -17.59833 -17.22867 -17.03890 -16.86223 -16.65080 -16.14325 -15.90554 -15.75182 -15.50189 -15.25105 -15.22768 -15.03129 -14.98653 -14.36735 -14.22668 -13.92475 -13.37506 -13.30028 -13.23014 -13.12239 -12.72399 -12.68520 -12.51319 -12.20159 -12.16812 -12.08311 -12.05927 -11.95912 -11.77348 -11.64097 -11.59319 -11.06124 -10.62843 -10.60729 -9.97390 -9.78727 -9.14534 -8.57553 -7.88982 -5.44357 0.85818 1.04116 1.47972 1.50813 1.61165 1.62226 1.84906 2.32720 2.50487 2.68831 2.87606 3.26144 3.57951 3.68889 3.92326 4.02857 4.09792 4.18050 4.21133 4.24353 4.29297 4.39675 4.45846 4.48380 4.51951 4.55591 4.57593 4.58277 4.68410 4.77103 4.83689 4.86395 4.89333 5.01085 5.05971 5.14051 5.19691 5.21679 5.44912 5.57050 5.66585 5.75960 5.85911 6.17752 6.26419 6.39314 6.52453 6.94138 7.11618 7.35872 7.77040 8.35280 9.15850 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002067 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.531973 B =13541.202382 C =14967.092839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.066 3.934 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.367 5.367 7 C 0.087 3.913 8 C -0.301 4.301 9 C 0.300 3.700 10 N -0.647 5.647 11 C 0.714 3.286 12 O -0.599 6.599 13 N -0.611 5.611 14 C 0.099 3.901 15 C 0.169 3.831 16 N -0.605 5.605 17 C -0.268 4.268 18 H 0.069 0.931 19 C -0.042 4.042 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.295 1.295 25 C 0.131 3.869 26 C 0.125 3.875 27 N -0.352 5.352 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.225 0.775 38 H 0.154 0.846 39 H 0.416 0.584 40 H 0.080 0.920 41 H 0.089 0.911 42 H -0.002 1.002 43 H 0.066 0.934 44 H 0.252 0.748 45 H 0.006 0.994 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.837 15.089 -6.126 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.011 4.011 4 C -0.167 4.167 5 C 0.021 3.979 6 N -0.151 5.151 7 C -0.060 4.060 8 C -0.331 4.331 9 C 0.044 3.956 10 N -0.300 5.300 11 C 0.415 3.585 12 O -0.478 6.478 13 N -0.347 5.347 14 C -0.025 4.025 15 C 0.043 3.957 16 N -0.329 5.329 17 C -0.398 4.398 18 H 0.087 0.913 19 C -0.238 4.238 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.215 1.215 24 H -0.222 1.222 25 C 0.004 3.996 26 C 0.001 3.999 27 N -0.183 5.183 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.117 0.883 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.489 14.708 -5.967 29.183 hybrid contribution 1.131 -0.911 0.579 1.563 sum -23.359 13.797 -5.388 27.659 Atomic orbital electron populations 1.22917 0.79203 1.03654 1.01186 1.87857 1.21762 1.29327 1.95704 1.22476 0.91818 0.84566 1.02243 1.21681 0.94714 0.97226 1.03030 1.21878 0.71945 0.97355 1.06732 1.48427 1.07045 1.39315 1.20315 1.23167 0.88494 0.98312 0.96021 1.21875 0.99602 1.10119 1.01531 1.19136 0.86762 0.95898 0.93799 1.41769 1.02359 1.53981 1.31878 1.15631 0.80138 0.79720 0.82986 1.90776 1.84409 1.48340 1.24282 1.47244 1.05317 1.53588 1.28523 1.22488 1.00307 0.92899 0.86840 1.20949 0.84159 0.92072 0.98553 1.44140 1.01920 1.59800 1.27039 1.19495 0.96441 0.97649 1.26186 0.91349 1.25999 1.00012 0.95098 1.02706 1.70171 1.37601 1.06489 1.43451 0.85201 0.78722 0.77688 0.78731 1.18815 1.21465 1.22207 1.21417 0.98899 0.90753 0.88500 1.22012 0.79181 0.97431 1.01276 1.77240 1.00543 1.23177 1.17299 0.89275 0.92937 0.92547 0.91540 0.90524 0.92006 0.92515 0.84011 0.88285 0.75881 0.82812 0.74454 0.90150 0.89281 0.98433 0.91585 0.93932 0.97593 0.90452 0.88937 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.31 10.70 -148.98 -1.59 -8.91 16 3 C 0.07 0.71 5.94 71.98 0.43 1.14 16 4 C -0.13 -1.91 5.77 30.60 0.18 -1.74 16 5 C 0.14 1.52 6.51 86.38 0.56 2.09 16 6 N -0.37 -7.58 3.68 -348.11 -1.28 -8.86 16 7 C 0.09 1.69 11.44 83.52 0.96 2.64 16 8 C -0.30 -8.80 9.61 22.11 0.21 -8.59 16 9 C 0.30 9.64 8.11 133.31 1.08 10.72 16 10 N -0.65 -21.09 5.36 -321.24 -1.72 -22.81 16 11 C 0.71 26.16 8.26 179.05 1.48 27.64 16 12 O -0.60 -24.21 12.90 -3.99 -0.05 -24.26 16 13 N -0.61 -22.06 2.94 -835.14 -2.46 -24.52 16 14 C 0.10 3.47 6.59 86.56 0.57 4.04 16 15 C 0.17 7.81 5.48 86.56 0.47 8.29 16 16 N -0.61 -29.67 2.93 -697.37 -2.04 -31.72 16 17 C -0.27 -14.21 9.51 84.03 0.80 -13.41 16 18 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 19 C -0.04 -2.26 4.90 84.86 0.42 -1.84 16 20 N -0.93 -54.09 11.60 21.65 0.25 -53.84 16 21 Si 0.97 43.55 29.58 68.60 2.03 45.58 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 25 C 0.13 5.49 6.67 86.42 0.58 6.07 16 26 C 0.13 4.46 6.60 86.42 0.57 5.03 16 27 N -0.35 -10.29 12.43 -54.44 -0.68 -10.96 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.14 0.33 8.07 -2.39 -0.02 0.31 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.15 5.09 5.93 -2.91 -0.02 5.07 16 39 H 0.42 12.10 6.29 -92.71 -0.58 11.51 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.09 2.62 5.61 -2.39 -0.01 2.60 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 3.34 6.46 -2.39 -0.02 3.33 16 44 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.08 3.06 7.94 -2.39 -0.02 3.04 16 47 H 0.09 3.19 6.99 -2.39 -0.02 3.18 16 48 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -75.90 389.06 2.39 -73.51 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.39 Total: 23.21 kcal Atomic # 6 Polarization: 34.04 SS G_CDS: 9.55 Total: 43.59 kcal Atomic # 7 Polarization: -144.79 SS G_CDS: -7.93 Total: -152.71 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.65 Total: -33.17 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -75.90 2.39 -73.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.858 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds