Wall clock time and date at job start Tue Mar 31 2020 21:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99662 * 2 1 4 4 H 1.08004 * 119.99682 * 203.04545 * 3 2 1 5 5 C 1.38809 * 120.00340 * 23.04549 * 3 2 1 6 6 N 1.31614 * 119.99834 * 12.93464 * 5 3 2 7 7 Si 1.86799 * 119.99993 * 192.94019 * 5 3 2 8 8 H 1.48497 * 109.47461 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47287 * 119.99782 * 7 5 3 10 10 H 1.48496 * 109.47064 * 239.99765 * 7 5 3 11 11 C 1.46508 * 120.00128 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46948 * 90.00090 * 11 2 1 13 13 C 1.52996 * 109.46888 * 180.02562 * 12 11 2 14 14 N 1.46504 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99970 * 179.97438 * 14 13 12 16 16 O 1.21598 * 120.00040 * 359.97438 * 15 14 13 17 17 C 1.47524 * 119.99893 * 179.97438 * 15 14 13 18 18 C 1.36597 * 125.77012 * 180.30356 * 17 15 14 19 19 N 1.34812 * 106.83791 * 180.18741 * 18 17 15 20 20 C 1.46501 * 126.59169 * 179.85797 * 19 18 17 21 21 C 1.53175 * 109.54022 * 274.70272 * 20 19 18 22 22 C 1.53094 * 109.16337 * 176.84976 * 21 20 19 23 23 O 1.42895 * 109.41432 * 302.39115 * 22 21 20 24 24 C 1.42903 * 114.09801 * 61.16086 * 23 22 21 25 25 C 1.53091 * 109.41080 * 298.83947 * 24 23 22 26 26 N 1.40208 * 106.81330 * 359.58546 * 19 18 17 27 27 N 1.28759 * 108.36588 * 0.26451 * 26 19 18 28 28 H 1.08997 * 109.47046 * 275.12076 * 1 2 3 29 29 H 1.08997 * 109.47511 * 35.12695 * 1 2 3 30 30 H 1.09011 * 109.47024 * 155.12691 * 1 2 3 31 31 H 0.97000 * 120.00028 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46793 * 330.00169 * 11 2 1 33 33 H 1.08998 * 109.47045 * 209.99976 * 11 2 1 34 34 H 1.09003 * 109.46990 * 59.99538 * 12 11 2 35 35 H 1.09005 * 109.46546 * 300.00092 * 12 11 2 36 36 H 1.08993 * 109.47428 * 59.99618 * 13 12 11 37 37 H 1.09008 * 109.46916 * 299.99559 * 13 12 11 38 38 H 0.97004 * 119.99694 * 359.97438 * 14 13 12 39 39 H 1.08003 * 126.58067 * 0.03643 * 18 17 15 40 40 H 1.09001 * 109.54625 * 154.53173 * 20 19 18 41 41 H 1.09001 * 109.52386 * 56.94177 * 21 20 19 42 42 H 1.08999 * 109.57910 * 296.78510 * 21 20 19 43 43 H 1.09004 * 109.48060 * 182.41055 * 22 21 20 44 44 H 1.09000 * 109.47990 * 62.37697 * 22 21 20 45 45 H 1.08999 * 109.48065 * 58.82440 * 24 23 22 46 46 H 1.08995 * 109.48029 * 178.85947 * 24 23 22 47 47 H 1.08999 * 109.52442 * 297.70228 * 25 24 23 48 48 H 1.09003 * 109.57341 * 177.54803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3156 4.0073 0.1452 8 1 3.5697 3.8265 -0.6293 9 1 1.3713 4.8507 -0.6309 10 1 2.6240 4.6704 1.4376 11 6 2.1976 -1.2688 0.0006 12 6 2.4526 -1.7111 -1.4418 13 6 3.2170 -3.0363 -1.4412 14 7 3.4618 -3.4595 -2.8223 15 6 4.1244 -4.6071 -3.0680 16 8 4.5196 -5.2910 -2.1435 17 6 4.3703 -5.0335 -4.4587 18 6 5.0209 -6.1719 -4.8416 19 7 5.0329 -6.1802 -6.1896 20 6 5.6254 -7.2062 -7.0514 21 6 7.1151 -6.9105 -7.2503 22 6 7.7423 -8.0292 -8.0863 23 8 7.5377 -9.2829 -7.4318 24 6 6.1632 -9.6345 -7.2610 25 6 5.4726 -8.5802 -6.3919 26 7 4.3639 -5.0214 -6.6083 27 7 3.9876 -4.3702 -5.5632 28 1 -0.3633 0.0917 1.0235 29 1 -0.3634 0.8405 -0.5913 30 1 -0.3634 -0.9324 -0.4323 31 1 -0.0153 3.0662 1.4744 32 1 1.6085 -2.0282 0.5147 33 1 3.1500 -1.1382 0.5143 34 1 3.0416 -0.9515 -1.9560 35 1 1.5001 -1.8416 -1.9555 36 1 2.6277 -3.7955 -0.9271 37 1 4.1695 -2.9061 -0.9273 38 1 3.1468 -2.9138 -3.5598 39 1 5.4463 -6.9204 -4.1895 40 1 5.1215 -7.2061 -8.0179 41 1 7.6092 -6.8600 -6.2800 42 1 7.2325 -5.9589 -7.7688 43 1 8.8113 -7.8461 -8.1950 44 1 7.2754 -8.0526 -9.0709 45 1 5.6756 -9.6789 -8.2349 46 1 6.0946 -10.6077 -6.7752 47 1 5.9334 -8.5635 -5.4043 48 1 4.4141 -8.8225 -6.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479807456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:21 Heat of formation + Delta-G solvation = 31.211552 kcal Electronic energy + Delta-G solvation = -28129.438258 eV Core-core repulsion = 24029.319231 eV Total energy + Delta-G solvation = -4100.119027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61403 -40.11008 -39.28657 -36.22977 -35.99974 -34.73156 -32.25594 -32.09033 -31.88459 -31.14697 -29.77816 -26.41735 -25.88068 -25.41174 -24.54316 -23.53519 -22.83715 -21.83297 -20.80762 -20.74474 -20.09073 -18.49300 -17.10023 -16.90226 -16.68179 -16.37588 -16.08634 -15.88738 -15.56231 -15.32622 -15.16301 -14.80213 -14.58015 -14.46965 -13.94210 -13.89986 -13.29573 -13.24476 -12.89336 -12.65132 -12.63770 -12.36831 -12.26082 -11.94448 -11.75095 -11.66837 -11.38574 -11.19916 -10.98411 -10.76884 -10.75515 -10.68730 -10.48027 -10.43975 -10.19647 -10.09080 -9.81153 -9.74910 -9.60321 -8.93157 -8.50710 -6.69275 -5.67587 -3.14475 0.80119 1.50408 1.53741 3.08435 3.14323 3.21801 3.40858 3.48018 3.50238 3.53365 3.74923 3.89818 4.01800 4.08383 4.33081 4.36970 4.47666 4.54190 4.59507 4.70073 4.73795 4.84208 4.91698 4.96394 5.12857 5.18661 5.26318 5.32486 5.47410 5.50486 5.52216 5.85650 5.94577 5.97248 6.14882 6.21669 6.38504 6.46850 6.57941 6.79856 6.82225 6.99748 7.42635 7.44875 7.72199 7.78197 7.85759 8.17274 8.45107 9.28931 9.92654 10.41680 11.37243 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.001643 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.736167 B =17042.649136 C =17486.435979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.156 3.844 12 C -0.152 4.152 13 C 0.121 3.879 14 N -0.708 5.708 15 C 0.600 3.400 16 O -0.544 6.544 17 C -0.097 4.097 18 C 0.093 3.907 19 N -0.358 5.358 20 C 0.151 3.849 21 C -0.169 4.169 22 C 0.066 3.934 23 O -0.378 6.378 24 C 0.067 3.933 25 C -0.172 4.172 26 N -0.065 5.065 27 N -0.202 5.202 28 H 0.031 0.969 29 H 0.039 0.961 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.408 0.592 39 H 0.202 0.798 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.280 -26.120 -20.242 35.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.028 3.972 12 C -0.192 4.192 13 C -0.003 4.003 14 N -0.358 5.358 15 C 0.383 3.617 16 O -0.421 6.421 17 C -0.236 4.236 18 C -0.064 4.064 19 N -0.143 5.143 20 C 0.049 3.951 21 C -0.208 4.208 22 C -0.012 4.012 23 O -0.296 6.296 24 C -0.011 4.011 25 C -0.211 4.211 26 N -0.044 5.044 27 N -0.075 5.075 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.244 0.756 39 H 0.219 0.781 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.126 0.874 47 H 0.107 0.893 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.111 -25.738 -20.629 35.138 hybrid contribution 0.255 0.881 0.123 0.925 sum 12.366 -24.857 -20.506 34.516 Atomic orbital electron populations 1.20787 0.82680 0.95328 0.99437 1.43898 1.01854 1.00689 1.86114 1.19235 0.98253 0.85630 1.35163 0.91377 1.25029 0.97933 0.98541 0.98300 1.70081 1.19489 1.27002 1.38776 0.86197 0.78561 0.84407 0.77470 1.20322 1.21673 1.21771 1.20598 0.96352 0.88500 0.91799 1.22550 0.99613 0.94166 1.02920 1.21530 1.00610 0.97159 0.80972 1.45959 1.56474 1.22993 1.10423 1.16765 0.78287 0.81424 0.85196 1.90806 1.52490 1.54666 1.44090 1.21571 1.10464 0.96883 0.94681 1.23275 0.98401 0.99503 0.85173 1.50655 1.39342 1.18897 1.05399 1.21646 0.94452 0.84704 0.94269 1.22718 0.93269 1.01269 1.03563 1.22597 1.02068 0.82131 0.94376 1.88014 1.24711 1.37292 1.79577 1.22572 0.81985 0.97678 0.98824 1.22728 1.03619 0.93116 1.01609 1.82014 1.12460 0.92698 1.17256 1.74660 1.13972 1.22482 0.96427 0.95104 0.94190 0.98389 0.93861 0.94379 0.93242 0.91411 0.92094 0.91470 0.91327 0.75626 0.78113 0.86644 0.89697 0.89201 0.87577 0.92256 0.92253 0.87439 0.89296 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.98 59.85 0.54 4.61 16 2 N -0.60 -15.36 2.92 -181.11 -0.53 -15.89 16 3 C -0.25 -7.05 9.65 -15.06 -0.15 -7.19 16 4 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -26.97 10.71 55.49 0.59 -26.37 16 7 Si 0.90 22.19 29.57 -169.99 -5.03 17.16 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 C 0.16 3.18 5.65 -4.03 -0.02 3.16 16 12 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 13 C 0.12 1.79 5.67 -4.04 -0.02 1.77 16 14 N -0.71 -9.92 5.55 -61.35 -0.34 -10.26 16 15 C 0.60 8.59 7.82 -12.48 -0.10 8.50 16 16 O -0.54 -8.98 16.86 5.28 0.09 -8.89 16 17 C -0.10 -1.19 6.99 -83.55 -0.58 -1.78 16 18 C 0.09 0.85 10.39 -16.84 -0.17 0.68 16 19 N -0.36 -2.97 3.55 -54.39 -0.19 -3.17 16 20 C 0.15 0.71 3.32 -67.75 -0.23 0.49 16 21 C -0.17 -0.70 5.75 -26.59 -0.15 -0.85 16 22 C 0.07 0.21 6.84 37.21 0.25 0.46 16 23 O -0.38 -1.87 10.77 -35.23 -0.38 -2.25 16 24 C 0.07 0.18 6.84 37.20 0.25 0.44 16 25 C -0.17 -0.55 5.13 -26.60 -0.14 -0.69 16 26 N -0.06 -0.75 13.78 60.35 0.83 0.08 16 27 N -0.20 -2.63 12.04 32.85 0.40 -2.24 16 28 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 29 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 30 H 0.00 -0.05 8.03 -51.92 -0.42 -0.47 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 38 H 0.41 5.36 8.16 -40.82 -0.33 5.03 16 39 H 0.20 1.31 7.26 -52.48 -0.38 0.93 16 40 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 46 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.09 0.30 7.07 -51.93 -0.37 -0.06 16 48 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -34.62 396.06 -7.06 -41.69 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.72 Total: -2.60 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.76 Total: 6.77 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.76 Total: -57.85 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.29 Total: -11.14 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.62 -7.06 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479807456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.900 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds