Wall clock time and date at job start Tue Mar 31 2020 21:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99662 * 2 1 4 4 H 1.08004 * 119.99682 * 203.04545 * 3 2 1 5 5 C 1.38809 * 120.00340 * 23.04549 * 3 2 1 6 6 N 1.31614 * 119.99834 * 12.93464 * 5 3 2 7 7 Si 1.86799 * 119.99993 * 192.94019 * 5 3 2 8 8 H 1.48497 * 109.47461 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47287 * 119.99782 * 7 5 3 10 10 H 1.48496 * 109.47064 * 239.99765 * 7 5 3 11 11 C 1.46508 * 120.00128 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46948 * 90.00090 * 11 2 1 13 13 C 1.52996 * 109.46888 * 180.02562 * 12 11 2 14 14 N 1.46504 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99970 * 179.97438 * 14 13 12 16 16 O 1.21598 * 120.00040 * 359.97438 * 15 14 13 17 17 C 1.47524 * 119.99893 * 179.97438 * 15 14 13 18 18 C 1.36597 * 125.77012 * 180.30356 * 17 15 14 19 19 N 1.34812 * 106.83791 * 180.18741 * 18 17 15 20 20 C 1.46501 * 126.59169 * 179.85797 * 19 18 17 21 21 C 1.53175 * 109.54022 * 274.70272 * 20 19 18 22 22 C 1.53094 * 109.16337 * 176.84976 * 21 20 19 23 23 O 1.42895 * 109.41432 * 302.39115 * 22 21 20 24 24 C 1.42903 * 114.09801 * 61.16086 * 23 22 21 25 25 C 1.53091 * 109.41080 * 298.83947 * 24 23 22 26 26 N 1.40208 * 106.81330 * 359.58546 * 19 18 17 27 27 N 1.28759 * 108.36588 * 0.26451 * 26 19 18 28 28 H 1.08997 * 109.47046 * 275.12076 * 1 2 3 29 29 H 1.08997 * 109.47511 * 35.12695 * 1 2 3 30 30 H 1.09011 * 109.47024 * 155.12691 * 1 2 3 31 31 H 0.97000 * 120.00028 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46793 * 330.00169 * 11 2 1 33 33 H 1.08998 * 109.47045 * 209.99976 * 11 2 1 34 34 H 1.09003 * 109.46990 * 59.99538 * 12 11 2 35 35 H 1.09005 * 109.46546 * 300.00092 * 12 11 2 36 36 H 1.08993 * 109.47428 * 59.99618 * 13 12 11 37 37 H 1.09008 * 109.46916 * 299.99559 * 13 12 11 38 38 H 0.97004 * 119.99694 * 359.97438 * 14 13 12 39 39 H 1.08003 * 126.58067 * 0.03643 * 18 17 15 40 40 H 1.09001 * 109.54625 * 154.53173 * 20 19 18 41 41 H 1.09001 * 109.52386 * 56.94177 * 21 20 19 42 42 H 1.08999 * 109.57910 * 296.78510 * 21 20 19 43 43 H 1.09004 * 109.48060 * 182.41055 * 22 21 20 44 44 H 1.09000 * 109.47990 * 62.37697 * 22 21 20 45 45 H 1.08999 * 109.48065 * 58.82440 * 24 23 22 46 46 H 1.08995 * 109.48029 * 178.85947 * 24 23 22 47 47 H 1.08999 * 109.52442 * 297.70228 * 25 24 23 48 48 H 1.09003 * 109.57341 * 177.54803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3156 4.0073 0.1452 8 1 3.5697 3.8265 -0.6293 9 1 1.3713 4.8507 -0.6309 10 1 2.6240 4.6704 1.4376 11 6 2.1976 -1.2688 0.0006 12 6 2.4526 -1.7111 -1.4418 13 6 3.2170 -3.0363 -1.4412 14 7 3.4618 -3.4595 -2.8223 15 6 4.1244 -4.6071 -3.0680 16 8 4.5196 -5.2910 -2.1435 17 6 4.3703 -5.0335 -4.4587 18 6 5.0209 -6.1719 -4.8416 19 7 5.0329 -6.1802 -6.1896 20 6 5.6254 -7.2062 -7.0514 21 6 7.1151 -6.9105 -7.2503 22 6 7.7423 -8.0292 -8.0863 23 8 7.5377 -9.2829 -7.4318 24 6 6.1632 -9.6345 -7.2610 25 6 5.4726 -8.5802 -6.3919 26 7 4.3639 -5.0214 -6.6083 27 7 3.9876 -4.3702 -5.5632 28 1 -0.3633 0.0917 1.0235 29 1 -0.3634 0.8405 -0.5913 30 1 -0.3634 -0.9324 -0.4323 31 1 -0.0153 3.0662 1.4744 32 1 1.6085 -2.0282 0.5147 33 1 3.1500 -1.1382 0.5143 34 1 3.0416 -0.9515 -1.9560 35 1 1.5001 -1.8416 -1.9555 36 1 2.6277 -3.7955 -0.9271 37 1 4.1695 -2.9061 -0.9273 38 1 3.1468 -2.9138 -3.5598 39 1 5.4463 -6.9204 -4.1895 40 1 5.1215 -7.2061 -8.0179 41 1 7.6092 -6.8600 -6.2800 42 1 7.2325 -5.9589 -7.7688 43 1 8.8113 -7.8461 -8.1950 44 1 7.2754 -8.0526 -9.0709 45 1 5.6756 -9.6789 -8.2349 46 1 6.0946 -10.6077 -6.7752 47 1 5.9334 -8.5635 -5.4043 48 1 4.4141 -8.8225 -6.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479807456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:20 Heat of formation + Delta-G solvation = 6.407439 kcal Electronic energy + Delta-G solvation = -28130.513845 eV Core-core repulsion = 24029.319231 eV Total energy + Delta-G solvation = -4101.194614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.40378 -40.62793 -40.22417 -37.94414 -36.53189 -36.18213 -33.80863 -32.71960 -32.37700 -32.16467 -31.28495 -27.95997 -27.34556 -26.46228 -25.01685 -24.52564 -23.47448 -23.27570 -22.14379 -21.38766 -21.21720 -19.31780 -18.71015 -17.69495 -17.36811 -17.24377 -16.97431 -16.81740 -16.52563 -16.40934 -15.90485 -15.78530 -15.58995 -15.33608 -15.00923 -14.92578 -14.70631 -14.58895 -14.45326 -13.50749 -13.42486 -13.36579 -13.02780 -12.81401 -12.79014 -12.65344 -12.60368 -12.50047 -12.44251 -12.28030 -12.26215 -12.05854 -11.82613 -11.51583 -11.46431 -11.32588 -11.28761 -10.74925 -10.63285 -10.49250 -10.06503 -8.76104 -7.81156 -5.30460 0.04842 0.54144 0.91368 1.46437 1.47716 1.58231 2.08378 2.17738 2.52435 2.87760 3.07433 3.13310 3.32261 3.42291 3.60646 3.67227 3.74043 3.79168 3.84339 4.07748 4.14249 4.14480 4.20799 4.28163 4.44809 4.50048 4.52887 4.58503 4.66624 4.68969 4.76487 4.81864 4.87888 4.87980 4.94694 4.95420 5.03909 5.25843 5.30928 5.35446 5.38497 5.52831 5.65599 5.72965 6.17296 6.34527 6.38622 6.82408 7.07588 7.17257 7.89679 8.33167 9.22148 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.001643 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.736167 B =17042.649136 C =17486.435979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.259 4.259 4 H 0.071 0.929 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.266 1.266 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.151 3.849 12 C -0.131 4.131 13 C 0.132 3.868 14 N -0.707 5.707 15 C 0.602 3.398 16 O -0.569 6.569 17 C -0.120 4.120 18 C 0.110 3.890 19 N -0.343 5.343 20 C 0.143 3.857 21 C -0.164 4.164 22 C 0.067 3.933 23 O -0.398 6.398 24 C 0.065 3.935 25 C -0.167 4.167 26 N -0.084 5.084 27 N -0.224 5.224 28 H 0.004 0.996 29 H 0.013 0.987 30 H 0.032 0.968 31 H 0.247 0.753 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.413 0.587 39 H 0.229 0.771 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.491 -27.896 -21.793 37.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.191 1.191 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.025 3.975 12 C -0.171 4.171 13 C 0.009 3.991 14 N -0.357 5.357 15 C 0.387 3.613 16 O -0.448 6.448 17 C -0.260 4.260 18 C -0.048 4.048 19 N -0.127 5.127 20 C 0.043 3.957 21 C -0.203 4.203 22 C -0.010 4.010 23 O -0.317 6.317 24 C -0.012 4.012 25 C -0.205 4.205 26 N -0.063 5.063 27 N -0.097 5.097 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.245 0.755 40 H 0.145 0.855 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.107 0.893 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.347 -27.547 -22.234 37.833 hybrid contribution -0.063 1.285 0.548 1.398 sum 13.283 -26.262 -21.686 36.557 Atomic orbital electron populations 1.20540 0.82862 0.95921 0.97607 1.44160 1.02144 1.01797 1.86327 1.19564 0.98451 0.86797 1.34159 0.91089 1.25805 0.98718 1.01933 0.98683 1.70240 1.20914 1.27474 1.40147 0.85189 0.78009 0.80097 0.77081 1.19052 1.21866 1.21932 1.20780 0.95906 0.86899 0.93952 1.22192 0.99839 0.94892 1.00178 1.21294 1.00203 0.95987 0.81662 1.45875 1.56555 1.23207 1.10089 1.16947 0.77554 0.80931 0.85840 1.90785 1.53572 1.55347 1.45057 1.21429 1.12513 0.98362 0.93688 1.23631 0.96697 0.98741 0.85683 1.50914 1.37887 1.18362 1.05519 1.22061 0.94729 0.84481 0.94445 1.22678 0.92662 1.01610 1.03336 1.22672 1.02605 0.81151 0.94595 1.87992 1.25994 1.37846 1.79870 1.22711 0.81100 0.97785 0.99567 1.22730 1.04156 0.92080 1.01565 1.81933 1.13344 0.93913 1.17115 1.74631 1.14854 1.23412 0.96816 0.97746 0.96806 0.94907 0.94340 0.92895 0.93514 0.92502 0.91882 0.90953 0.91533 0.75118 0.75517 0.85455 0.90521 0.89575 0.86920 0.90812 0.90888 0.86395 0.89342 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 8.98 127.77 1.15 9.99 16 2 N -0.62 -31.51 2.92 -726.91 -2.12 -33.63 16 3 C -0.26 -14.43 9.65 84.03 0.81 -13.62 16 4 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 5 C -0.06 -3.24 5.10 84.86 0.43 -2.81 16 6 N -0.94 -56.83 10.71 21.65 0.23 -56.60 16 7 Si 0.97 45.91 29.57 68.60 2.03 47.94 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 C 0.15 6.02 5.65 86.38 0.49 6.51 16 12 C -0.13 -4.29 5.65 30.59 0.17 -4.12 16 13 C 0.13 3.77 5.67 86.38 0.49 4.26 16 14 N -0.71 -19.15 5.55 -466.28 -2.59 -21.74 16 15 C 0.60 16.72 7.82 86.69 0.68 17.40 16 16 O -0.57 -18.20 16.86 -4.02 -0.07 -18.27 16 17 C -0.12 -2.85 6.99 40.82 0.29 -2.56 16 18 C 0.11 1.84 10.39 83.85 0.87 2.71 16 19 N -0.34 -5.11 3.55 -325.98 -1.16 -6.27 16 20 C 0.14 1.05 3.32 45.11 0.15 1.20 16 21 C -0.16 -1.07 5.75 30.68 0.18 -0.89 16 22 C 0.07 0.29 6.84 72.01 0.49 0.78 16 23 O -0.40 -3.10 10.77 -148.98 -1.60 -4.70 16 24 C 0.07 0.19 6.84 72.01 0.49 0.69 16 25 C -0.17 -0.67 5.13 30.68 0.16 -0.51 16 26 N -0.08 -1.86 13.78 37.02 0.51 -1.35 16 27 N -0.22 -5.70 12.04 -49.99 -0.60 -6.31 16 28 H 0.00 0.24 7.34 -2.39 -0.02 0.22 16 29 H 0.01 0.73 7.34 -2.39 -0.02 0.71 16 30 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 31 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 32 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.41 10.54 8.16 -92.71 -0.76 9.78 16 39 H 0.23 2.42 7.26 -2.91 -0.02 2.40 16 40 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.11 0.32 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.09 0.38 7.07 -2.39 -0.02 0.37 16 48 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -74.33 396.06 1.68 -72.65 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.21 Total: 9.25 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 6.85 Total: 19.03 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.73 Total: -125.89 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.67 Total: -22.97 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.33 1.68 -72.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479807456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.055 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds