Wall clock time and date at job start Tue Mar 31 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47147 * 2 1 4 4 C 1.46504 * 119.99758 * 269.99926 * 3 2 1 5 5 C 1.50700 * 109.46886 * 269.99858 * 4 3 2 6 6 H 1.07997 * 120.00582 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99811 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99903 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47425 * 120.00156 * 9 7 5 12 12 H 1.48504 * 109.46920 * 239.99782 * 9 7 5 13 13 C 1.34771 * 120.00141 * 90.00224 * 3 2 1 14 14 O 1.21283 * 119.99963 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00179 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47164 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99792 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47321 * 34.99815 * 17 16 15 19 19 C 1.53002 * 109.47150 * 275.00127 * 17 16 15 20 20 C 1.53005 * 109.47121 * 155.00037 * 17 16 15 21 21 N 1.46500 * 109.47015 * 304.99698 * 20 17 16 22 22 C 1.34773 * 120.00012 * 179.97438 * 21 20 17 23 23 O 1.21602 * 119.99799 * 0.02562 * 22 21 20 24 24 C 1.47428 * 119.99961 * 180.02562 * 22 21 20 25 25 C 1.41290 * 126.41548 * 0.02720 * 24 22 21 26 26 N 1.30448 * 108.01917 * 179.97438 * 25 24 22 27 27 N 1.39930 * 108.90321 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.75825 * 180.02562 * 27 26 25 29 29 C 1.34259 * 108.48819 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.47285 * 300.00156 * 1 2 3 31 31 H 1.08999 * 109.47028 * 60.00123 * 1 2 3 32 32 H 1.08998 * 109.47484 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47285 * 239.99843 * 2 1 3 34 34 H 1.08999 * 109.47028 * 119.99877 * 2 1 3 35 35 H 1.08998 * 109.47227 * 29.99816 * 4 3 2 36 36 H 1.09000 * 109.46766 * 150.00185 * 4 3 2 37 37 H 0.97001 * 120.00001 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.46955 * 59.99769 * 15 13 3 39 39 H 1.09004 * 109.46936 * 300.00218 * 15 13 3 40 40 H 1.00893 * 111.00406 * 56.04884 * 16 15 13 41 41 H 1.08998 * 109.46933 * 180.02562 * 19 17 16 42 42 H 1.09008 * 109.47105 * 299.99723 * 19 17 16 43 43 H 1.08994 * 109.47415 * 60.00076 * 19 17 16 44 44 H 1.09000 * 109.46620 * 185.00156 * 20 17 16 45 45 H 1.09000 * 109.46951 * 65.00070 * 20 17 16 46 46 H 0.97000 * 119.99853 * 0.02562 * 21 20 17 47 47 H 1.07996 * 125.98525 * 0.02562 * 25 24 22 48 48 H 1.08005 * 126.28791 * 180.26005 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9134 2.0963 -3.4170 10 1 6.6007 1.2403 -2.4170 11 1 5.9205 1.4181 -4.7382 12 1 6.6215 3.3972 -3.5247 13 6 2.2430 2.0165 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0757 1.5463 4.8801 18 1 2.3274 0.4889 4.7983 19 6 0.6029 1.6914 5.2683 20 6 2.9522 2.1977 5.9518 21 7 4.3528 2.1647 5.5235 22 6 5.3117 2.6863 6.3140 23 8 5.0143 3.1840 7.3829 24 6 6.7211 2.6536 5.8827 25 6 7.2164 2.1127 4.6751 26 7 8.5107 2.2747 4.6612 27 7 8.8997 2.9181 5.8414 28 1 9.8078 3.1584 6.0831 29 6 7.8039 3.1465 6.5828 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6876 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6757 3.5175 -4.4432 38 1 2.6212 0.4186 2.5302 39 1 0.9432 1.0126 2.5299 40 1 1.7841 3.0655 3.5214 41 1 0.4299 1.2018 6.2267 42 1 0.3512 2.7488 5.3502 43 1 -0.0215 1.2273 4.5050 44 1 2.8460 1.6518 6.8892 45 1 2.6407 3.2322 6.0964 46 1 4.5900 1.7680 4.6707 47 1 6.6266 1.6474 3.8992 48 1 7.7745 3.6313 7.5475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480427287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:38 Heat of formation + Delta-G solvation = 1.575011 kcal Electronic energy + Delta-G solvation = -29249.205687 eV Core-core repulsion = 25147.801523 eV Total energy + Delta-G solvation = -4101.404164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46797 -39.42958 -38.98231 -37.14525 -35.26291 -34.03197 -32.80637 -32.02302 -31.10090 -30.31294 -30.08128 -27.61877 -26.60399 -25.38565 -23.04269 -22.82400 -22.23668 -22.10898 -21.12653 -19.97146 -18.74913 -18.35465 -16.77526 -16.40166 -16.31046 -16.04448 -15.76150 -15.50611 -15.01529 -14.96224 -14.72757 -14.44834 -14.11612 -14.08882 -13.78537 -13.42684 -13.22492 -12.97857 -12.75066 -12.69207 -12.58051 -12.53655 -12.04967 -11.82808 -11.67427 -11.56693 -11.30233 -11.20464 -11.12966 -10.88871 -10.73456 -10.53437 -10.11442 -10.04148 -9.88227 -9.60197 -9.14768 -8.92142 -8.81600 -8.42544 -8.40725 -7.65179 -6.03211 -4.07592 1.38186 2.05909 2.50468 3.30300 3.31178 3.38457 3.40783 3.46111 3.48053 3.70726 4.28043 4.47258 4.52641 4.62509 4.65514 4.84162 5.01778 5.04051 5.08675 5.17433 5.23967 5.31682 5.32775 5.39008 5.49090 5.53049 5.59336 5.64566 5.67120 5.74179 5.81199 5.91241 5.99423 6.18981 6.20534 6.43964 6.50906 6.81663 6.86319 7.11115 7.28888 7.34456 7.45430 7.56297 7.66616 7.93628 8.24867 8.33981 8.43701 8.92396 9.12175 9.57807 11.04900 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008234 B = 0.003417 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.704411 B = 8191.558025 C =11032.892637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.040 3.960 16 N -0.667 5.667 17 C 0.069 3.931 18 H 0.085 0.915 19 C -0.181 4.181 20 C 0.136 3.864 21 N -0.709 5.709 22 C 0.594 3.406 23 O -0.562 6.562 24 C -0.291 4.291 25 C 0.090 3.910 26 N -0.294 5.294 27 N -0.466 5.466 28 H 0.443 0.557 29 C 0.129 3.871 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.355 0.645 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.408 0.592 47 H 0.193 0.807 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -7.017 20.195 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.092 4.092 16 N -0.300 5.300 17 C -0.041 4.041 18 H 0.103 0.897 19 C -0.240 4.240 20 C 0.012 3.988 21 N -0.359 5.359 22 C 0.382 3.618 23 O -0.443 6.443 24 C -0.306 4.306 25 C -0.098 4.098 26 N -0.115 5.115 27 N -0.171 5.171 28 H 0.288 0.712 29 C -0.024 4.024 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.175 0.825 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.244 0.756 47 H 0.210 0.790 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.339 -6.288 20.052 21.057 hybrid contribution -0.267 -0.127 -0.351 0.459 sum 1.072 -6.415 19.700 20.746 Atomic orbital electron populations 1.22222 0.96941 1.01339 1.02217 1.21393 0.93358 0.84380 1.02615 1.48257 1.63966 1.13190 1.07749 1.19248 0.96249 0.93579 0.78101 1.21469 0.96910 1.31718 1.06167 0.92385 1.24931 0.97796 0.94942 0.96437 1.69940 1.35581 1.33560 1.14374 0.86464 0.84722 0.78091 0.78278 1.19732 1.21044 1.20905 1.20182 0.78966 0.87156 0.84865 1.90692 1.44830 1.17904 1.86904 1.21955 1.00101 0.96603 0.90558 1.60186 1.63043 1.07128 0.99616 1.21861 0.93709 0.98949 0.89624 0.89667 1.22433 0.96488 1.02809 1.02305 1.21295 0.80236 1.01372 0.95936 1.45540 1.06393 1.61044 1.22957 1.17189 0.83851 0.77263 0.83502 1.90745 1.83342 1.46925 1.23248 1.20328 0.94508 1.16763 0.99030 1.24215 0.91695 0.97059 0.96855 1.77234 1.14679 1.17171 1.02400 1.46269 1.09449 1.46424 1.14979 0.71208 1.23021 0.85997 0.96071 0.97299 0.93266 0.92041 0.92229 0.89969 0.91867 0.95161 0.93990 0.92821 0.88750 0.92875 0.82486 0.91653 0.91864 0.92077 0.91279 0.91464 0.75601 0.79034 0.79298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 5 C -0.52 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.50 9.67 7.71 -10.99 -0.08 9.59 16 14 O -0.53 -12.66 15.78 5.56 0.09 -12.57 16 15 C 0.04 0.52 4.52 -4.98 -0.02 0.49 16 16 N -0.67 -8.04 5.31 -107.99 -0.57 -8.62 16 17 C 0.07 0.61 2.75 -67.71 -0.19 0.42 16 18 H 0.09 0.67 7.80 -51.93 -0.40 0.27 16 19 C -0.18 -1.34 9.16 37.16 0.34 -1.00 16 20 C 0.14 1.38 5.37 -4.04 -0.02 1.36 16 21 N -0.71 -8.05 5.38 -61.38 -0.33 -8.38 16 22 C 0.59 7.81 7.81 -12.52 -0.10 7.71 16 23 O -0.56 -8.90 16.90 5.28 0.09 -8.81 16 24 C -0.29 -3.41 6.13 -105.07 -0.64 -4.06 16 25 C 0.09 1.06 11.50 -16.98 -0.20 0.87 16 26 N -0.29 -3.60 12.63 30.86 0.39 -3.21 16 27 N -0.47 -4.09 7.29 30.85 0.22 -3.86 16 28 H 0.44 2.23 8.96 -182.73 -1.64 0.60 16 29 C 0.13 1.20 11.82 -16.56 -0.20 1.00 16 30 H 0.05 0.57 7.22 -51.93 -0.37 0.19 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 35 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 36 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 1.07 7.31 -51.93 -0.38 0.69 16 39 H 0.05 0.58 6.48 -51.93 -0.34 0.24 16 40 H 0.35 4.70 8.17 -39.30 -0.32 4.38 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.49 8.13 -51.92 -0.42 0.07 16 43 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.41 4.41 7.09 -40.82 -0.29 4.12 16 47 H 0.19 1.94 7.50 -52.49 -0.39 1.55 16 48 H 0.19 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -37.12 403.86 -8.53 -45.65 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.59 Total: 5.80 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.20 Total: 9.20 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.02 Total: -62.18 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.12 -8.53 -45.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.221 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds