Wall clock time and date at job start Tue Mar 31 2020 20:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47147 * 2 1 4 4 C 1.46504 * 119.99758 * 269.99926 * 3 2 1 5 5 C 1.50700 * 109.46886 * 269.99858 * 4 3 2 6 6 H 1.07997 * 120.00582 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99811 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99903 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47425 * 120.00156 * 9 7 5 12 12 H 1.48504 * 109.46920 * 239.99782 * 9 7 5 13 13 C 1.34771 * 120.00141 * 90.00224 * 3 2 1 14 14 O 1.21283 * 119.99963 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00179 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47164 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99792 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47321 * 34.99815 * 17 16 15 19 19 C 1.53002 * 109.47150 * 275.00127 * 17 16 15 20 20 C 1.53005 * 109.47121 * 155.00037 * 17 16 15 21 21 N 1.46500 * 109.47015 * 304.99698 * 20 17 16 22 22 C 1.34773 * 120.00012 * 179.97438 * 21 20 17 23 23 O 1.21602 * 119.99799 * 0.02562 * 22 21 20 24 24 C 1.47428 * 119.99961 * 180.02562 * 22 21 20 25 25 C 1.41290 * 126.41548 * 0.02720 * 24 22 21 26 26 N 1.30448 * 108.01917 * 179.97438 * 25 24 22 27 27 N 1.39930 * 108.90321 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.75825 * 180.02562 * 27 26 25 29 29 C 1.34259 * 108.48819 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.47285 * 300.00156 * 1 2 3 31 31 H 1.08999 * 109.47028 * 60.00123 * 1 2 3 32 32 H 1.08998 * 109.47484 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47285 * 239.99843 * 2 1 3 34 34 H 1.08999 * 109.47028 * 119.99877 * 2 1 3 35 35 H 1.08998 * 109.47227 * 29.99816 * 4 3 2 36 36 H 1.09000 * 109.46766 * 150.00185 * 4 3 2 37 37 H 0.97001 * 120.00001 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.46955 * 59.99769 * 15 13 3 39 39 H 1.09004 * 109.46936 * 300.00218 * 15 13 3 40 40 H 1.00893 * 111.00406 * 56.04884 * 16 15 13 41 41 H 1.08998 * 109.46933 * 180.02562 * 19 17 16 42 42 H 1.09008 * 109.47105 * 299.99723 * 19 17 16 43 43 H 1.08994 * 109.47415 * 60.00076 * 19 17 16 44 44 H 1.09000 * 109.46620 * 185.00156 * 20 17 16 45 45 H 1.09000 * 109.46951 * 65.00070 * 20 17 16 46 46 H 0.97000 * 119.99853 * 0.02562 * 21 20 17 47 47 H 1.07996 * 125.98525 * 0.02562 * 25 24 22 48 48 H 1.08005 * 126.28791 * 180.26005 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9134 2.0963 -3.4170 10 1 6.6007 1.2403 -2.4170 11 1 5.9205 1.4181 -4.7382 12 1 6.6215 3.3972 -3.5247 13 6 2.2430 2.0165 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0757 1.5463 4.8801 18 1 2.3274 0.4889 4.7983 19 6 0.6029 1.6914 5.2683 20 6 2.9522 2.1977 5.9518 21 7 4.3528 2.1647 5.5235 22 6 5.3117 2.6863 6.3140 23 8 5.0143 3.1840 7.3829 24 6 6.7211 2.6536 5.8827 25 6 7.2164 2.1127 4.6751 26 7 8.5107 2.2747 4.6612 27 7 8.8997 2.9181 5.8414 28 1 9.8078 3.1584 6.0831 29 6 7.8039 3.1465 6.5828 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6876 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6757 3.5175 -4.4432 38 1 2.6212 0.4186 2.5302 39 1 0.9432 1.0126 2.5299 40 1 1.7841 3.0655 3.5214 41 1 0.4299 1.2018 6.2267 42 1 0.3512 2.7488 5.3502 43 1 -0.0215 1.2273 4.5050 44 1 2.8460 1.6518 6.8892 45 1 2.6407 3.2322 6.0964 46 1 4.5900 1.7680 4.6707 47 1 6.6266 1.6474 3.8992 48 1 7.7745 3.6313 7.5475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480427287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:37 Heat of formation + Delta-G solvation = -28.161932 kcal Electronic energy + Delta-G solvation = -29250.495178 eV Core-core repulsion = 25147.801523 eV Total energy + Delta-G solvation = -4102.693654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28792 -40.72839 -40.10295 -38.11323 -36.82511 -35.08979 -34.79212 -32.87450 -32.07513 -31.50262 -31.11675 -29.28627 -27.38379 -26.79636 -24.61808 -23.85043 -23.52755 -22.95643 -21.91980 -20.83993 -19.90880 -19.47747 -18.58909 -17.90350 -17.52136 -16.96856 -16.87286 -16.61004 -16.47714 -16.05333 -15.79180 -15.53956 -15.43456 -15.03329 -14.82993 -14.61898 -14.44403 -14.12133 -13.87598 -13.74307 -13.61963 -13.42664 -13.30317 -13.23687 -13.05427 -12.84233 -12.67930 -12.47252 -12.44912 -12.16798 -12.12573 -11.86390 -11.77790 -11.64490 -10.89238 -10.85459 -10.62591 -10.47047 -10.08152 -9.66605 -9.40916 -9.27008 -8.19712 -6.33808 0.59064 1.15844 1.37095 1.40140 1.51440 1.82053 1.95604 2.30343 2.42559 2.47998 2.55369 3.10038 3.25756 3.70652 3.80645 3.91427 3.93373 4.14613 4.17502 4.22621 4.33602 4.42021 4.43344 4.51347 4.55729 4.69792 4.70587 4.74822 4.88214 4.93415 4.99755 5.04085 5.06718 5.10370 5.26791 5.33017 5.34236 5.43259 5.62008 5.62863 5.89700 6.04769 6.10869 6.24282 6.36311 6.48357 6.75086 6.75728 6.91774 7.33103 7.39018 7.61231 8.87233 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008234 B = 0.003417 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.704411 B = 8191.558025 C =11032.892637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.682 5.682 17 C 0.080 3.920 18 H 0.106 0.894 19 C -0.176 4.176 20 C 0.135 3.865 21 N -0.704 5.704 22 C 0.591 3.409 23 O -0.596 6.596 24 C -0.319 4.319 25 C 0.086 3.914 26 N -0.327 5.327 27 N -0.451 5.451 28 H 0.459 0.541 29 C 0.146 3.854 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.018 0.982 36 H -0.007 1.007 37 H 0.265 0.735 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.345 0.655 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.411 0.589 47 H 0.199 0.801 48 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -9.399 21.889 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.211 1.211 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.072 4.072 16 N -0.315 5.315 17 C -0.030 4.030 18 H 0.124 0.876 19 C -0.236 4.236 20 C 0.011 3.989 21 N -0.353 5.353 22 C 0.380 3.620 23 O -0.479 6.479 24 C -0.334 4.334 25 C -0.102 4.102 26 N -0.148 5.148 27 N -0.157 5.157 28 H 0.307 0.693 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.165 0.835 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.247 0.753 47 H 0.216 0.784 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.684 -8.742 21.747 23.498 hybrid contribution -0.386 0.644 -0.841 1.127 sum 1.297 -8.098 20.906 22.457 Atomic orbital electron populations 1.22153 0.94819 1.03378 1.01539 1.21733 0.95076 0.81426 1.03982 1.48274 1.64177 1.15096 1.06188 1.18635 0.95089 0.91391 0.80694 1.21764 0.97938 1.31535 1.06273 0.92651 1.25833 1.02139 0.94617 0.96594 1.70060 1.37626 1.34488 1.14879 0.85418 0.79353 0.77915 0.78442 1.18870 1.19539 1.21129 1.21370 0.77266 0.86693 0.86538 1.90660 1.47381 1.20744 1.87902 1.21854 1.02426 0.96187 0.86761 1.60147 1.63553 1.07065 1.00740 1.21859 0.94401 0.99357 0.87392 0.87574 1.22386 0.95154 1.02644 1.03376 1.21388 0.79773 1.00789 0.96988 1.45574 1.06741 1.60278 1.22736 1.17420 0.84618 0.76832 0.83175 1.90716 1.83925 1.48652 1.24622 1.20397 0.94494 1.18661 0.99823 1.24370 0.91741 0.97000 0.97129 1.77162 1.14971 1.18542 1.04151 1.46267 1.10330 1.45250 1.13885 0.69258 1.23462 0.85290 0.94388 0.97720 0.92000 0.94712 0.88733 0.91350 0.87722 0.96389 0.98863 0.92574 0.86113 0.89752 0.83539 0.90026 0.92678 0.91381 0.90236 0.93139 0.75266 0.78389 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 10.24 71.98 0.74 -2.83 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.61 -24.18 2.46 -826.16 -2.03 -26.21 16 4 C 0.26 14.06 5.16 85.63 0.44 14.50 16 5 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.49 18.88 7.71 87.66 0.68 19.56 16 14 O -0.59 -29.26 15.78 -3.04 -0.05 -29.31 16 15 C 0.06 1.36 4.52 85.56 0.39 1.75 16 16 N -0.68 -15.37 5.31 -495.56 -2.63 -18.00 16 17 C 0.08 1.19 2.75 44.92 0.12 1.31 16 18 H 0.11 1.21 7.80 -2.39 -0.02 1.19 16 19 C -0.18 -2.10 9.16 71.98 0.66 -1.44 16 20 C 0.13 2.55 5.37 86.38 0.46 3.01 16 21 N -0.70 -15.39 5.38 -466.37 -2.51 -17.90 16 22 C 0.59 15.28 7.81 86.66 0.68 15.96 16 23 O -0.60 -18.70 16.90 -4.04 -0.07 -18.77 16 24 C -0.32 -7.25 6.13 -20.15 -0.12 -7.37 16 25 C 0.09 1.97 11.50 85.65 0.99 2.96 16 26 N -0.33 -7.75 12.63 -56.28 -0.71 -8.47 16 27 N -0.45 -7.23 7.29 -56.31 -0.41 -7.64 16 28 H 0.46 3.79 8.96 -213.43 -1.91 1.88 16 29 C 0.15 2.48 11.82 84.28 1.00 3.48 16 30 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 35 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 36 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.12 2.19 7.31 -2.39 -0.02 2.18 16 39 H 0.08 1.46 6.48 -2.38 -0.02 1.45 16 40 H 0.35 9.01 8.17 -89.70 -0.73 8.28 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 0.76 8.13 -2.38 -0.02 0.74 16 43 H 0.07 0.75 7.45 -2.39 -0.02 0.73 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.41 8.47 7.09 -92.71 -0.66 7.81 16 47 H 0.20 3.98 7.50 -2.91 -0.02 3.96 16 48 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -85.62 403.86 -1.16 -86.78 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -2.30 Total: 24.12 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 7.24 Total: 24.53 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -8.01 Total: -134.61 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.12 Total: -48.08 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -85.62 -1.16 -86.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.616 kcal (2) G-P(sol) polarization free energy of solvation -85.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds