Wall clock time and date at job start Tue Mar 31 2020 20:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46751 * 2 1 4 4 C 1.46495 * 120.00396 * 269.99994 * 3 2 1 5 5 C 1.50705 * 109.47323 * 270.00651 * 4 3 2 6 6 H 1.07997 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99635 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47186 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46920 * 119.99798 * 9 7 5 12 12 H 1.48496 * 109.46913 * 239.99596 * 9 7 5 13 13 C 1.34778 * 119.99665 * 90.00682 * 3 2 1 14 14 O 1.21292 * 119.99826 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00274 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47251 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00216 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.46968 * 325.00646 * 17 16 15 19 19 C 1.53002 * 109.46691 * 85.00426 * 17 16 15 20 20 C 1.53001 * 109.47394 * 205.00365 * 17 16 15 21 21 N 1.46504 * 109.46758 * 55.00298 * 20 17 16 22 22 C 1.34773 * 119.99639 * 179.97438 * 21 20 17 23 23 O 1.21611 * 120.00144 * 0.02562 * 22 21 20 24 24 C 1.47434 * 120.00031 * 179.97438 * 22 21 20 25 25 C 1.41284 * 126.41045 * 359.68855 * 24 22 21 26 26 N 1.30451 * 108.02018 * 180.26412 * 25 24 22 27 27 N 1.39937 * 108.89927 * 359.97438 * 26 25 24 28 28 H 0.96991 * 125.75494 * 179.97438 * 27 26 25 29 29 C 1.34258 * 108.48917 * 0.02562 * 27 26 25 30 30 H 1.09001 * 109.46826 * 299.99210 * 1 2 3 31 31 H 1.08997 * 109.47171 * 59.99709 * 1 2 3 32 32 H 1.09004 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47252 * 240.00508 * 2 1 3 34 34 H 1.08993 * 109.47611 * 120.00114 * 2 1 3 35 35 H 1.08999 * 109.47016 * 30.00308 * 4 3 2 36 36 H 1.09002 * 109.47824 * 150.00083 * 4 3 2 37 37 H 0.97004 * 119.99338 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47131 * 60.00408 * 15 13 3 39 39 H 1.09000 * 109.47575 * 300.00664 * 15 13 3 40 40 H 1.00887 * 111.00647 * 303.96125 * 16 15 13 41 41 H 1.08999 * 109.46985 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.47106 * 300.00109 * 19 17 16 43 43 H 1.08998 * 109.47235 * 60.00384 * 19 17 16 44 44 H 1.08992 * 109.46829 * 295.00268 * 20 17 16 45 45 H 1.08997 * 109.46746 * 174.99840 * 20 17 16 46 46 H 0.97001 * 120.00027 * 359.97438 * 21 20 17 47 47 H 1.08001 * 125.99432 * 0.22954 * 25 24 22 48 48 H 1.07998 * 126.29194 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1269 -3.6174 9 14 5.9137 2.0978 -3.4165 10 1 6.6014 1.2425 -2.4161 11 1 5.9215 1.4194 -4.7374 12 1 6.6208 3.3991 -3.5242 13 6 2.2430 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9915 1.3062 2.4723 16 7 2.3104 2.2060 3.5889 17 6 2.0761 1.5460 4.8803 18 1 1.2153 0.8824 4.7982 19 6 3.3122 0.7324 5.2688 20 6 1.8042 2.6038 5.9517 21 7 0.6947 3.4591 5.5230 22 6 0.2765 4.4672 6.3138 23 8 0.8205 4.6671 7.3829 24 6 -0.8396 5.3284 5.8822 25 6 -1.5601 5.2234 4.6714 26 7 -2.4626 6.1653 4.6559 27 7 -2.3645 6.9065 5.8387 28 1 -2.9189 7.6649 6.0800 29 6 -1.3726 6.3916 6.5829 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1412 -1.1384 37 1 3.6753 3.5174 -4.4433 38 1 2.6214 0.4186 2.5301 39 1 0.9434 1.0123 2.5299 40 1 3.2588 2.5435 3.5218 41 1 3.1382 0.2424 6.2268 42 1 3.5059 -0.0212 4.5055 43 1 4.1729 1.3961 5.3509 44 1 2.6969 3.2120 6.0965 45 1 1.5431 2.1126 6.8891 46 1 0.2611 3.2999 4.6701 47 1 -1.3928 4.4920 3.8946 48 1 -1.0513 6.7441 7.5518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480427288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:44 Heat of formation + Delta-G solvation = 1.210372 kcal Electronic energy + Delta-G solvation = -29131.733532 eV Core-core repulsion = 25030.313556 eV Total energy + Delta-G solvation = -4101.419976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52479 -39.43992 -38.99637 -37.14779 -35.25928 -34.05395 -32.82193 -32.07419 -31.11828 -30.35292 -30.07184 -27.61971 -26.61112 -25.39094 -23.03438 -22.86562 -22.24271 -22.16477 -21.12947 -20.01935 -18.79225 -18.37194 -16.75684 -16.46155 -16.25843 -16.05454 -15.74369 -15.45118 -15.30286 -14.99381 -14.78950 -14.43655 -14.13864 -13.99508 -13.67002 -13.43331 -13.26869 -13.08912 -12.84231 -12.71278 -12.55567 -12.42598 -12.04799 -11.88662 -11.73935 -11.45182 -11.36688 -11.19563 -11.12607 -10.89908 -10.75303 -10.54830 -10.13566 -10.10439 -9.91889 -9.62042 -9.18910 -8.94177 -8.85622 -8.44214 -8.39294 -7.65302 -6.04772 -4.09440 1.33135 1.99631 2.44659 3.26903 3.28802 3.36176 3.38819 3.43974 3.44998 3.70038 4.28540 4.44474 4.47085 4.58169 4.65491 4.84107 4.97386 5.04385 5.10500 5.11827 5.24154 5.30016 5.36924 5.39154 5.45189 5.49704 5.60694 5.64215 5.66083 5.76596 5.82677 5.93318 6.00989 6.12559 6.21681 6.46190 6.47883 6.80553 6.81761 7.11247 7.22392 7.34362 7.46250 7.55807 7.63126 7.92004 8.23495 8.30639 8.43911 8.90617 9.11924 9.55859 11.03233 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.002589 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.300289 B =10810.309043 C =11639.271374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.040 3.960 16 N -0.668 5.668 17 C 0.069 3.931 18 H 0.085 0.915 19 C -0.182 4.182 20 C 0.136 3.864 21 N -0.708 5.708 22 C 0.593 3.407 23 O -0.561 6.561 24 C -0.291 4.291 25 C 0.090 3.910 26 N -0.295 5.295 27 N -0.466 5.466 28 H 0.444 0.556 29 C 0.130 3.870 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.356 0.644 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.407 0.593 47 H 0.192 0.808 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -3.409 20.205 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.092 4.092 16 N -0.301 5.301 17 C -0.041 4.041 18 H 0.103 0.897 19 C -0.241 4.241 20 C 0.011 3.989 21 N -0.359 5.359 22 C 0.381 3.619 23 O -0.441 6.441 24 C -0.306 4.306 25 C -0.099 4.099 26 N -0.116 5.116 27 N -0.171 5.171 28 H 0.288 0.712 29 C -0.023 4.023 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.177 0.823 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.243 0.757 47 H 0.209 0.791 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.443 -1.730 20.060 23.159 hybrid contribution 1.948 -0.926 -0.343 2.184 sum -9.495 -2.656 19.717 22.044 Atomic orbital electron populations 1.22223 0.96783 1.01340 1.02386 1.21399 0.93511 0.84343 1.02520 1.48252 1.64016 1.13147 1.07740 1.19248 0.96152 0.93669 0.78126 1.21461 0.96950 1.31775 1.06204 0.92560 1.24936 0.97788 0.94952 0.96452 1.69942 1.35559 1.33456 1.14331 0.86462 0.84728 0.78043 0.78282 1.19882 1.20993 1.20883 1.20179 0.79014 0.87103 0.84867 1.90695 1.45033 1.17705 1.86914 1.21954 1.02139 0.94574 0.90575 1.60215 1.33348 1.36904 0.99611 1.21855 0.98402 0.94232 0.89633 0.89708 1.22436 0.98495 1.00852 1.02317 1.21303 0.89933 0.91663 0.95960 1.45533 1.35742 1.31750 1.22868 1.17199 0.81649 0.79514 0.83547 1.90754 1.58416 1.71753 1.23221 1.20335 1.06425 1.04885 0.98944 1.24186 0.92130 0.96692 0.96871 1.77215 1.23800 1.08145 1.02437 1.46259 1.28241 1.27850 1.14755 0.71181 1.23030 0.88687 0.93272 0.97331 0.93027 0.92000 0.92272 0.90050 0.91968 0.95115 0.93879 0.92783 0.92825 0.88801 0.82318 0.91669 0.92019 0.91809 0.91418 0.91256 0.75694 0.79092 0.79274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -11.93 2.46 -175.06 -0.43 -12.36 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 5 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.50 9.68 7.71 -10.99 -0.08 9.60 16 14 O -0.53 -12.67 15.78 5.55 0.09 -12.58 16 15 C 0.04 0.51 4.52 -4.98 -0.02 0.49 16 16 N -0.67 -8.06 5.31 -107.99 -0.57 -8.63 16 17 C 0.07 0.61 2.75 -67.71 -0.19 0.43 16 18 H 0.08 0.65 7.80 -51.93 -0.40 0.25 16 19 C -0.18 -1.42 9.16 37.16 0.34 -1.08 16 20 C 0.14 1.35 5.37 -4.04 -0.02 1.33 16 21 N -0.71 -7.67 5.38 -61.38 -0.33 -8.00 16 22 C 0.59 7.47 7.81 -12.52 -0.10 7.38 16 23 O -0.56 -8.68 16.90 5.27 0.09 -8.59 16 24 C -0.29 -3.18 6.13 -105.07 -0.64 -3.82 16 25 C 0.09 0.95 11.50 -16.98 -0.20 0.75 16 26 N -0.30 -3.27 12.63 30.86 0.39 -2.88 16 27 N -0.47 -3.68 7.29 30.85 0.22 -3.46 16 28 H 0.44 1.87 8.96 -182.73 -1.64 0.24 16 29 C 0.13 1.11 11.82 -16.56 -0.20 0.92 16 30 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.05 0.62 6.69 -51.93 -0.35 0.27 16 39 H 0.09 1.01 7.10 -51.93 -0.37 0.64 16 40 H 0.36 4.90 8.17 -39.30 -0.32 4.58 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 43 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.41 4.07 7.09 -40.82 -0.29 3.78 16 47 H 0.19 1.65 7.50 -52.49 -0.39 1.26 16 48 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -37.00 403.86 -8.53 -45.52 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.59 Total: 5.08 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.20 Total: 8.79 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.02 Total: -61.01 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.00 -8.53 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.735 kcal (2) G-P(sol) polarization free energy of solvation -36.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds