Wall clock time and date at job start Tue Mar 31 2020 20:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46751 * 2 1 4 4 C 1.46495 * 120.00396 * 269.99994 * 3 2 1 5 5 C 1.50705 * 109.47323 * 270.00651 * 4 3 2 6 6 H 1.07997 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99635 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47186 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46920 * 119.99798 * 9 7 5 12 12 H 1.48496 * 109.46913 * 239.99596 * 9 7 5 13 13 C 1.34778 * 119.99665 * 90.00682 * 3 2 1 14 14 O 1.21292 * 119.99826 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00274 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47251 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00216 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.46968 * 325.00646 * 17 16 15 19 19 C 1.53002 * 109.46691 * 85.00426 * 17 16 15 20 20 C 1.53001 * 109.47394 * 205.00365 * 17 16 15 21 21 N 1.46504 * 109.46758 * 55.00298 * 20 17 16 22 22 C 1.34773 * 119.99639 * 179.97438 * 21 20 17 23 23 O 1.21611 * 120.00144 * 0.02562 * 22 21 20 24 24 C 1.47434 * 120.00031 * 179.97438 * 22 21 20 25 25 C 1.41284 * 126.41045 * 359.68855 * 24 22 21 26 26 N 1.30451 * 108.02018 * 180.26412 * 25 24 22 27 27 N 1.39937 * 108.89927 * 359.97438 * 26 25 24 28 28 H 0.96991 * 125.75494 * 179.97438 * 27 26 25 29 29 C 1.34258 * 108.48917 * 0.02562 * 27 26 25 30 30 H 1.09001 * 109.46826 * 299.99210 * 1 2 3 31 31 H 1.08997 * 109.47171 * 59.99709 * 1 2 3 32 32 H 1.09004 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47252 * 240.00508 * 2 1 3 34 34 H 1.08993 * 109.47611 * 120.00114 * 2 1 3 35 35 H 1.08999 * 109.47016 * 30.00308 * 4 3 2 36 36 H 1.09002 * 109.47824 * 150.00083 * 4 3 2 37 37 H 0.97004 * 119.99338 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47131 * 60.00408 * 15 13 3 39 39 H 1.09000 * 109.47575 * 300.00664 * 15 13 3 40 40 H 1.00887 * 111.00647 * 303.96125 * 16 15 13 41 41 H 1.08999 * 109.46985 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.47106 * 300.00109 * 19 17 16 43 43 H 1.08998 * 109.47235 * 60.00384 * 19 17 16 44 44 H 1.08992 * 109.46829 * 295.00268 * 20 17 16 45 45 H 1.08997 * 109.46746 * 174.99840 * 20 17 16 46 46 H 0.97001 * 120.00027 * 359.97438 * 21 20 17 47 47 H 1.08001 * 125.99432 * 0.22954 * 25 24 22 48 48 H 1.07998 * 126.29194 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1269 -3.6174 9 14 5.9137 2.0978 -3.4165 10 1 6.6014 1.2425 -2.4161 11 1 5.9215 1.4194 -4.7374 12 1 6.6208 3.3991 -3.5242 13 6 2.2430 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9915 1.3062 2.4723 16 7 2.3104 2.2060 3.5889 17 6 2.0761 1.5460 4.8803 18 1 1.2153 0.8824 4.7982 19 6 3.3122 0.7324 5.2688 20 6 1.8042 2.6038 5.9517 21 7 0.6947 3.4591 5.5230 22 6 0.2765 4.4672 6.3138 23 8 0.8205 4.6671 7.3829 24 6 -0.8396 5.3284 5.8822 25 6 -1.5601 5.2234 4.6714 26 7 -2.4626 6.1653 4.6559 27 7 -2.3645 6.9065 5.8387 28 1 -2.9189 7.6649 6.0800 29 6 -1.3726 6.3916 6.5829 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1412 -1.1384 37 1 3.6753 3.5174 -4.4433 38 1 2.6214 0.4186 2.5301 39 1 0.9434 1.0123 2.5299 40 1 3.2588 2.5435 3.5218 41 1 3.1382 0.2424 6.2268 42 1 3.5059 -0.0212 4.5055 43 1 4.1729 1.3961 5.3509 44 1 2.6969 3.2120 6.0965 45 1 1.5431 2.1126 6.8891 46 1 0.2611 3.2999 4.6701 47 1 -1.3928 4.4920 3.8946 48 1 -1.0513 6.7441 7.5518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480427288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:42 Heat of formation + Delta-G solvation = -28.433325 kcal Electronic energy + Delta-G solvation = -29133.018979 eV Core-core repulsion = 25030.313556 eV Total energy + Delta-G solvation = -4102.705423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.27846 -40.72598 -40.09814 -38.11307 -36.82302 -35.09011 -34.80137 -32.86664 -32.07597 -31.49402 -31.10795 -29.28915 -27.38851 -26.79845 -24.61868 -23.85336 -23.51384 -22.94265 -21.91869 -20.83843 -19.92172 -19.47231 -18.59654 -17.90284 -17.45343 -16.94162 -16.92128 -16.59776 -16.49803 -16.24003 -15.79582 -15.52021 -15.11667 -15.03972 -14.90059 -14.60189 -14.48558 -14.19349 -13.88548 -13.72043 -13.62544 -13.40879 -13.31151 -13.23136 -13.07949 -12.82005 -12.67680 -12.47827 -12.43628 -12.16319 -12.11479 -11.86442 -11.78830 -11.65972 -10.88838 -10.84379 -10.63703 -10.48799 -10.07744 -9.66084 -9.37147 -9.31402 -8.20604 -6.35300 0.59523 1.17140 1.36196 1.38837 1.50079 1.82495 1.95765 2.29314 2.42170 2.47891 2.55973 3.08751 3.25604 3.71373 3.80872 3.91260 3.94365 4.14142 4.17827 4.22443 4.35217 4.43059 4.45180 4.47619 4.55300 4.70467 4.73148 4.74744 4.88070 4.92685 5.02239 5.04929 5.05942 5.11127 5.27090 5.32347 5.35425 5.46004 5.61302 5.62349 5.89453 6.03733 6.09934 6.24638 6.33638 6.49120 6.74103 6.76343 6.91685 7.31651 7.39982 7.61021 8.86211 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.002589 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.300289 B =10810.309043 C =11639.271374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.681 5.681 17 C 0.080 3.920 18 H 0.109 0.891 19 C -0.178 4.178 20 C 0.135 3.865 21 N -0.703 5.703 22 C 0.590 3.410 23 O -0.597 6.597 24 C -0.319 4.319 25 C 0.087 3.913 26 N -0.326 5.326 27 N -0.451 5.451 28 H 0.459 0.541 29 C 0.145 3.855 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.018 0.982 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.344 0.656 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.412 0.588 47 H 0.203 0.797 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 -5.607 21.799 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.210 1.210 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.073 4.073 16 N -0.313 5.313 17 C -0.030 4.030 18 H 0.127 0.873 19 C -0.237 4.237 20 C 0.011 3.989 21 N -0.352 5.352 22 C 0.379 3.621 23 O -0.480 6.480 24 C -0.334 4.334 25 C -0.101 4.101 26 N -0.147 5.147 27 N -0.158 5.158 28 H 0.307 0.693 29 C -0.009 4.009 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.248 0.752 47 H 0.219 0.781 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.740 -3.985 21.654 24.952 hybrid contribution 1.968 -0.197 -0.804 2.135 sum -9.772 -4.181 20.849 23.402 Atomic orbital electron populations 1.22158 0.94571 1.03399 1.01789 1.21734 0.95304 0.81379 1.03805 1.48272 1.64234 1.15041 1.06185 1.18634 0.95023 0.91452 0.80705 1.21748 0.97950 1.31636 1.06341 0.92858 1.25861 1.02267 0.94595 0.96587 1.70065 1.37662 1.34371 1.14835 0.85388 0.79201 0.77918 0.78408 1.18982 1.19528 1.20993 1.21362 0.77311 0.86654 0.86534 1.90663 1.47553 1.20564 1.87907 1.21866 1.04459 0.94153 0.86791 1.60188 1.32681 1.37702 1.00748 1.21859 0.99805 0.93884 0.87422 0.87334 1.22396 0.97422 1.00531 1.03358 1.21368 0.88948 0.91627 0.96952 1.45549 1.35596 1.31367 1.22727 1.17454 0.81749 0.79749 0.83179 1.90724 1.59761 1.72832 1.24692 1.20389 1.07008 1.06141 0.99873 1.24387 0.91834 0.96797 0.97068 1.77155 1.24579 1.08945 1.04032 1.46265 1.28014 1.27764 1.13721 0.69270 1.23447 0.87679 0.92066 0.97757 0.91573 0.94700 0.88789 0.91495 0.87921 0.96379 0.98788 0.92525 0.90300 0.85571 0.83674 0.89943 0.91608 0.92832 0.93277 0.90215 0.75178 0.78085 0.76657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.10 2.77 5.93 86.38 0.51 3.28 16 3 N -0.61 -24.22 2.46 -826.16 -2.03 -26.25 16 4 C 0.26 14.08 5.16 85.64 0.44 14.52 16 5 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.32 5.46 84.66 0.46 0.79 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 9 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.49 18.90 7.71 87.65 0.68 19.58 16 14 O -0.59 -29.27 15.78 -3.07 -0.05 -29.32 16 15 C 0.06 1.35 4.52 85.55 0.39 1.74 16 16 N -0.68 -15.35 5.31 -495.56 -2.63 -17.98 16 17 C 0.08 1.20 2.75 44.92 0.12 1.32 16 18 H 0.11 1.18 7.80 -2.39 -0.02 1.16 16 19 C -0.18 -2.29 9.16 71.98 0.66 -1.63 16 20 C 0.14 2.52 5.37 86.38 0.46 2.99 16 21 N -0.70 -14.63 5.38 -466.36 -2.51 -17.14 16 22 C 0.59 14.67 7.81 86.67 0.68 15.35 16 23 O -0.60 -18.40 16.90 -4.07 -0.07 -18.46 16 24 C -0.32 -6.80 6.13 -20.15 -0.12 -6.92 16 25 C 0.09 1.81 11.50 85.65 0.99 2.79 16 26 N -0.33 -7.02 12.63 -56.28 -0.71 -7.73 16 27 N -0.45 -6.55 7.29 -56.32 -0.41 -6.96 16 28 H 0.46 3.16 8.96 -213.44 -1.91 1.24 16 29 C 0.15 2.29 11.82 84.28 1.00 3.29 16 30 H 0.07 1.27 7.22 -2.39 -0.02 1.25 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 35 H 0.02 0.99 8.07 -2.39 -0.02 0.98 16 36 H -0.01 -0.38 7.42 -2.39 -0.02 -0.39 16 37 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.08 1.48 6.69 -2.38 -0.02 1.46 16 39 H 0.13 2.13 7.10 -2.39 -0.02 2.12 16 40 H 0.34 9.33 8.17 -89.70 -0.73 8.60 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.82 7.45 -2.39 -0.02 0.80 16 43 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.41 7.78 7.09 -92.71 -0.66 7.12 16 47 H 0.20 3.42 7.50 -2.91 -0.02 3.40 16 48 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -85.49 403.86 -1.16 -86.65 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -2.30 Total: 22.76 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 7.24 Total: 23.73 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -8.01 Total: -132.32 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.12 Total: -47.79 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -85.49 -1.16 -86.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.216 kcal (2) G-P(sol) polarization free energy of solvation -85.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds