Wall clock time and date at job start Tue Mar 31 2020 20:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 N 1.46902 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.46897 * 110.99930 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47025 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99998 * 179.97438 * 7 6 5 10 10 C 1.37092 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00176 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99724 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00147 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99822 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47102 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46860 * 119.99809 * 14 12 10 17 17 H 1.48498 * 109.47240 * 239.99941 * 14 12 10 18 18 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 2 1 20 20 C 1.50702 * 119.99928 * 0.28128 * 18 2 1 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 2 22 22 C 1.50697 * 109.47491 * 179.97438 * 21 20 18 23 23 C 1.39869 * 126.03919 * 90.01645 * 22 21 20 24 24 N 1.30841 * 108.19752 * 179.97438 * 23 22 21 25 25 N 1.40080 * 108.20885 * 0.02562 * 24 23 22 26 26 C 1.46498 * 126.03779 * 180.02562 * 25 24 23 27 27 C 1.34951 * 107.92655 * 359.76050 * 25 24 23 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 34 34 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 35 35 H 1.00894 * 110.99712 * 56.04829 * 5 4 3 36 36 H 1.09001 * 109.47054 * 300.00083 * 6 5 4 37 37 H 1.09007 * 109.47252 * 60.00123 * 6 5 4 38 38 H 0.96997 * 119.99520 * 0.02562 * 9 7 6 39 39 H 0.96997 * 120.00222 * 180.02562 * 13 12 10 40 40 H 1.09004 * 109.46965 * 299.72211 * 20 18 2 41 41 H 1.08994 * 109.46990 * 59.72065 * 20 18 2 42 42 H 1.09004 * 109.47066 * 299.99797 * 21 20 18 43 43 H 1.09000 * 109.47234 * 59.99288 * 21 20 18 44 44 H 1.07997 * 125.90094 * 0.02562 * 23 22 21 45 45 H 1.09002 * 109.47085 * 89.97616 * 26 25 24 46 46 H 1.09003 * 109.47190 * 209.97570 * 26 25 24 47 47 H 1.09002 * 109.47163 * 329.97803 * 26 25 24 48 48 H 1.07999 * 126.12914 * 180.23785 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2034 4.7431 -2.7738 8 8 4.4932 5.2436 -1.7077 9 7 4.5559 5.3534 -3.9227 10 6 5.2415 6.5401 -3.8861 11 1 5.4988 6.9860 -2.9368 12 6 5.6044 7.1695 -5.0706 13 7 5.2909 6.6271 -6.2257 14 14 6.5380 8.7867 -5.0208 15 1 6.7665 9.1830 -3.6080 16 1 7.8446 8.6253 -5.7078 17 1 5.7444 9.8377 -5.7070 18 6 2.1390 -1.1672 0.0005 19 8 3.3518 -1.1671 0.0010 20 6 1.3855 -2.4723 -0.0053 21 6 2.3798 -3.6352 -0.0104 22 6 1.6264 -4.9403 -0.0156 23 6 1.2150 -5.6485 -1.1494 24 7 0.5929 -6.7290 -0.7528 25 7 0.5883 -6.7423 0.6479 26 6 -0.0058 -7.7769 1.4981 27 6 1.2328 -5.6366 1.0759 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0417 0.9508 -1.9563 34 1 1.5001 1.8406 -1.9564 35 1 4.0449 2.9045 -0.9165 36 1 4.0458 2.6906 -3.3378 37 1 2.5045 3.5812 -3.3370 38 1 4.3244 4.9530 -4.7753 39 1 5.5445 7.0663 -7.0525 40 1 0.7588 -2.5340 0.8844 41 1 0.7590 -2.5261 -0.8955 42 1 3.0065 -3.5735 -0.9001 43 1 3.0065 -3.5813 0.8798 44 1 1.3827 -5.3546 -2.1750 45 1 0.7372 -8.5466 1.7067 46 1 -0.3391 -7.3302 2.4349 47 1 -0.8576 -8.2237 0.9853 48 1 1.4023 -5.3566 2.1051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481318303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:19 Heat of formation + Delta-G solvation = 8.224986 kcal Electronic energy + Delta-G solvation = -27427.076427 eV Core-core repulsion = 23325.960628 eV Total energy + Delta-G solvation = -4101.115799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59602 -40.09282 -38.24963 -36.43905 -34.94574 -34.69298 -33.78417 -32.97545 -31.21407 -30.42758 -29.36589 -27.39562 -27.01499 -25.89518 -24.44480 -23.46301 -21.98291 -21.49539 -20.47044 -19.42297 -19.03812 -17.85910 -17.56041 -16.86269 -16.46270 -16.23764 -15.81592 -15.78916 -15.47301 -14.86656 -14.55650 -14.39968 -14.23636 -13.92042 -13.67902 -13.62320 -13.32356 -13.23903 -13.21988 -13.09659 -12.86099 -12.68234 -12.50190 -12.29281 -12.08254 -11.92964 -11.49883 -11.46753 -11.41500 -11.09753 -10.94741 -10.84746 -10.31682 -10.19576 -9.97154 -9.82421 -9.48926 -8.90864 -8.74945 -8.41686 -8.03976 -7.92658 -6.38669 -3.79321 1.47787 2.11232 2.37380 2.46824 2.81115 3.18905 3.29232 3.36841 3.94620 4.06003 4.16016 4.30583 4.41365 4.48713 4.62673 4.68932 4.76053 4.83235 4.85631 4.89489 5.00225 5.05855 5.13217 5.21553 5.23898 5.28124 5.29708 5.34041 5.44228 5.48440 5.55135 5.79732 5.87775 5.90278 5.93247 5.95697 6.03079 6.25470 6.27561 6.34899 6.58747 7.17299 7.22250 7.29794 7.58495 7.68119 8.01252 8.09860 8.64724 9.21169 9.57785 10.09312 10.79247 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.001433 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805336 B =19537.994291 C =19966.095793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.509 3.491 19 O -0.536 6.536 20 C -0.131 4.131 21 C -0.025 4.025 22 C -0.234 4.234 23 C 0.054 3.946 24 N -0.299 5.299 25 N -0.379 5.379 26 C 0.102 3.898 27 C 0.056 3.944 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.183 0.817 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -27.497 13.724 34.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C -0.007 4.007 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.298 3.702 19 O -0.413 6.413 20 C -0.171 4.171 21 C -0.064 4.064 22 C -0.246 4.246 23 C -0.133 4.133 24 N -0.121 5.121 25 N -0.161 5.161 26 C -0.040 4.040 27 C -0.090 4.090 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.200 0.800 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.275 -27.888 14.072 34.772 hybrid contribution 1.193 0.685 -0.701 1.544 sum -14.082 -27.203 13.371 33.423 Atomic orbital electron populations 1.21838 0.79345 1.03523 1.01938 1.47883 1.07120 1.06226 1.73905 1.21411 0.98250 0.83933 0.97068 1.22252 0.98960 0.90540 0.96677 1.60016 1.28378 1.27918 1.13694 1.21654 1.00202 0.96085 0.90085 1.19807 0.85140 0.87314 0.85038 1.90520 1.59246 1.67263 1.29653 1.41864 1.50045 1.21426 1.06763 1.19765 1.30785 0.97684 0.94574 0.87849 1.25258 0.98209 0.99861 0.94636 1.69619 1.47203 1.40073 0.97470 0.85801 0.78820 0.81145 0.78580 1.19199 1.20788 1.20772 1.20836 0.88147 0.85471 0.75769 1.90727 1.14001 1.87382 1.49173 1.21715 0.99446 0.91735 1.04251 1.19599 0.95298 0.87394 1.04126 1.20114 1.11271 1.01349 0.91837 1.23869 0.97144 0.92201 1.00043 1.77375 1.23903 1.22024 0.88750 1.48476 1.44128 1.18617 1.04895 1.21856 0.99256 0.89715 0.93164 1.22376 0.97744 0.88748 1.00157 0.92467 0.90589 0.90963 0.89452 0.89756 0.95123 0.91218 0.82974 0.93810 0.89655 0.77461 0.91954 0.89178 0.88867 0.90264 0.90652 0.79975 0.90775 0.89451 0.89294 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.25 59.85 0.61 1.06 16 2 N -0.62 -5.87 2.87 -181.57 -0.52 -6.39 16 3 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 4 C 0.05 0.62 6.01 -3.82 -0.02 0.59 16 5 N -0.67 -11.26 6.12 -115.05 -0.70 -11.97 16 6 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 7 C 0.44 10.72 7.82 -10.98 -0.09 10.64 16 8 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 9 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 14 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.51 5.40 7.67 -10.98 -0.08 5.32 16 19 O -0.54 -7.92 15.56 5.55 0.09 -7.83 16 20 C -0.13 -0.91 4.23 -27.88 -0.12 -1.03 16 21 C -0.03 -0.19 4.99 -27.89 -0.14 -0.33 16 22 C -0.23 -1.77 5.35 -105.05 -0.56 -2.33 16 23 C 0.05 0.45 11.96 -17.36 -0.21 0.24 16 24 N -0.30 -2.89 12.58 30.62 0.39 -2.51 16 25 N -0.38 -2.75 4.01 -68.16 -0.27 -3.02 16 26 C 0.10 0.32 11.47 59.85 0.69 1.01 16 27 C 0.06 0.36 11.40 -17.22 -0.20 0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.07 0.30 6.43 -51.93 -0.33 -0.03 16 31 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.35 6.23 8.43 -39.29 -0.33 5.89 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 38 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.09 0.54 7.40 -51.93 -0.38 0.16 16 42 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 44 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -36.88 409.07 -7.14 -44.02 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.60 Total: 10.71 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.41 Total: 9.46 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.45 Total: -62.72 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.17 Total: -23.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.88 -7.14 -44.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481318303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.244 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds