Wall clock time and date at job start Tue Mar 31 2020 20:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 N 1.46902 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.46897 * 110.99930 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47025 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99998 * 179.97438 * 7 6 5 10 10 C 1.37092 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00176 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99724 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00147 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99822 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47102 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46860 * 119.99809 * 14 12 10 17 17 H 1.48498 * 109.47240 * 239.99941 * 14 12 10 18 18 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 2 1 20 20 C 1.50702 * 119.99928 * 0.28128 * 18 2 1 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 2 22 22 C 1.50697 * 109.47491 * 179.97438 * 21 20 18 23 23 C 1.39869 * 126.03919 * 90.01645 * 22 21 20 24 24 N 1.30841 * 108.19752 * 179.97438 * 23 22 21 25 25 N 1.40080 * 108.20885 * 0.02562 * 24 23 22 26 26 C 1.46498 * 126.03779 * 180.02562 * 25 24 23 27 27 C 1.34951 * 107.92655 * 359.76050 * 25 24 23 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 34 34 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 35 35 H 1.00894 * 110.99712 * 56.04829 * 5 4 3 36 36 H 1.09001 * 109.47054 * 300.00083 * 6 5 4 37 37 H 1.09007 * 109.47252 * 60.00123 * 6 5 4 38 38 H 0.96997 * 119.99520 * 0.02562 * 9 7 6 39 39 H 0.96997 * 120.00222 * 180.02562 * 13 12 10 40 40 H 1.09004 * 109.46965 * 299.72211 * 20 18 2 41 41 H 1.08994 * 109.46990 * 59.72065 * 20 18 2 42 42 H 1.09004 * 109.47066 * 299.99797 * 21 20 18 43 43 H 1.09000 * 109.47234 * 59.99288 * 21 20 18 44 44 H 1.07997 * 125.90094 * 0.02562 * 23 22 21 45 45 H 1.09002 * 109.47085 * 89.97616 * 26 25 24 46 46 H 1.09003 * 109.47190 * 209.97570 * 26 25 24 47 47 H 1.09002 * 109.47163 * 329.97803 * 26 25 24 48 48 H 1.07999 * 126.12914 * 180.23785 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2034 4.7431 -2.7738 8 8 4.4932 5.2436 -1.7077 9 7 4.5559 5.3534 -3.9227 10 6 5.2415 6.5401 -3.8861 11 1 5.4988 6.9860 -2.9368 12 6 5.6044 7.1695 -5.0706 13 7 5.2909 6.6271 -6.2257 14 14 6.5380 8.7867 -5.0208 15 1 6.7665 9.1830 -3.6080 16 1 7.8446 8.6253 -5.7078 17 1 5.7444 9.8377 -5.7070 18 6 2.1390 -1.1672 0.0005 19 8 3.3518 -1.1671 0.0010 20 6 1.3855 -2.4723 -0.0053 21 6 2.3798 -3.6352 -0.0104 22 6 1.6264 -4.9403 -0.0156 23 6 1.2150 -5.6485 -1.1494 24 7 0.5929 -6.7290 -0.7528 25 7 0.5883 -6.7423 0.6479 26 6 -0.0058 -7.7769 1.4981 27 6 1.2328 -5.6366 1.0759 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0417 0.9508 -1.9563 34 1 1.5001 1.8406 -1.9564 35 1 4.0449 2.9045 -0.9165 36 1 4.0458 2.6906 -3.3378 37 1 2.5045 3.5812 -3.3370 38 1 4.3244 4.9530 -4.7753 39 1 5.5445 7.0663 -7.0525 40 1 0.7588 -2.5340 0.8844 41 1 0.7590 -2.5261 -0.8955 42 1 3.0065 -3.5735 -0.9001 43 1 3.0065 -3.5813 0.8798 44 1 1.3827 -5.3546 -2.1750 45 1 0.7372 -8.5466 1.7067 46 1 -0.3391 -7.3302 2.4349 47 1 -0.8576 -8.2237 0.9853 48 1 1.4023 -5.3566 2.1051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481318303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:18 Heat of formation + Delta-G solvation = -19.533516 kcal Electronic energy + Delta-G solvation = -27428.280126 eV Core-core repulsion = 23325.960628 eV Total energy + Delta-G solvation = -4102.319498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11557 -40.91454 -40.15116 -37.53369 -36.21110 -35.69358 -35.26037 -33.50022 -33.27765 -31.35287 -30.13125 -28.15965 -27.81477 -27.03908 -25.80747 -24.52070 -22.99942 -21.98851 -21.18732 -20.96876 -20.04853 -19.83403 -18.23999 -17.91162 -17.42967 -17.17500 -17.03180 -16.67210 -16.46350 -16.26162 -15.88102 -15.41797 -15.36297 -15.04899 -15.00595 -14.62400 -14.24972 -14.00254 -13.80443 -13.76468 -13.63245 -13.53458 -13.46355 -13.35853 -13.15117 -12.95792 -12.94087 -12.76408 -12.60180 -12.40704 -12.10848 -12.05054 -12.00175 -11.51995 -11.42112 -10.81837 -10.39478 -10.34842 -10.02446 -9.66910 -9.42815 -9.27338 -8.47142 -5.96144 0.97952 1.36881 1.42216 1.56751 1.67075 1.72875 1.79352 2.03121 2.06892 2.30332 2.98634 3.19840 3.50693 3.62480 3.77775 4.01642 4.03729 4.14304 4.24274 4.25912 4.29504 4.37438 4.39939 4.46133 4.46720 4.50791 4.57510 4.61719 4.71612 4.73181 4.75785 4.82468 4.86659 4.95697 4.99546 5.04362 5.29405 5.37273 5.40819 5.50867 5.73171 5.84104 6.05838 6.18102 6.28645 6.44760 6.58988 6.76475 7.11720 7.23002 7.54555 8.09710 8.70552 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.001433 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805336 B =19537.994291 C =19966.095793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.615 5.615 3 C 0.122 3.878 4 C 0.056 3.944 5 N -0.676 5.676 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.503 3.497 19 O -0.587 6.587 20 C -0.119 4.119 21 C -0.017 4.017 22 C -0.247 4.247 23 C 0.043 3.957 24 N -0.339 5.339 25 N -0.382 5.382 26 C 0.092 3.908 27 C 0.063 3.937 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.087 0.913 35 H 0.343 0.657 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.192 0.808 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.656 -28.135 14.216 35.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C -0.002 4.002 4 C -0.075 4.075 5 N -0.308 5.308 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.195 1.195 18 C 0.293 3.707 19 O -0.468 6.468 20 C -0.158 4.158 21 C -0.056 4.056 22 C -0.259 4.259 23 C -0.142 4.142 24 N -0.161 5.161 25 N -0.164 5.164 26 C -0.047 4.047 27 C -0.084 4.084 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.105 0.895 35 H 0.161 0.839 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.209 0.791 45 H 0.100 0.900 46 H 0.134 0.866 47 H 0.107 0.893 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.097 -28.562 14.542 36.326 hybrid contribution 1.698 0.822 -0.801 2.049 sum -15.400 -27.740 13.741 34.576 Atomic orbital electron populations 1.22117 0.76685 1.04846 1.03490 1.47985 1.08672 1.05084 1.73014 1.21219 0.97925 0.85346 0.95714 1.22262 0.98781 0.88445 0.97965 1.60045 1.28146 1.30044 1.12595 1.21524 1.00522 0.93027 0.91532 1.20816 0.84205 0.88612 0.83890 1.90488 1.60626 1.68796 1.30960 1.41924 1.50304 1.21193 1.07487 1.19729 1.33092 0.99411 0.94240 0.90269 1.26054 0.98389 1.02834 0.93916 1.69676 1.47259 1.41233 0.97950 0.84855 0.77918 0.77149 0.78307 1.19753 1.19622 1.19471 1.21525 0.87748 0.86746 0.74641 1.90707 1.16348 1.88114 1.51596 1.21696 0.99003 0.88985 1.06135 1.19443 0.95240 0.88107 1.02820 1.20102 1.12124 1.01496 0.92136 1.24136 0.97002 0.92142 1.00948 1.77310 1.25344 1.22958 0.90532 1.48813 1.43862 1.19364 1.04410 1.22174 0.99374 0.89505 0.93692 1.22870 0.96310 0.87969 1.01268 0.90781 0.90123 0.88863 0.88312 0.92015 0.96274 0.89483 0.83901 0.92201 0.87350 0.76961 0.91262 0.86679 0.87194 0.92153 0.91496 0.79069 0.89978 0.86561 0.89345 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.25 127.77 1.31 1.91 16 2 N -0.61 -10.66 2.87 -846.74 -2.43 -13.10 16 3 C 0.12 2.72 5.67 86.38 0.49 3.21 16 4 C 0.06 1.42 6.01 86.30 0.52 1.94 16 5 N -0.68 -22.53 6.12 -517.91 -3.17 -25.71 16 6 C 0.07 2.40 6.17 85.56 0.53 2.93 16 7 C 0.44 21.51 7.82 87.66 0.69 22.20 16 8 O -0.62 -35.45 15.78 -3.06 -0.05 -35.50 16 9 N -0.57 -30.09 5.29 -306.98 -1.62 -31.71 16 10 C -0.34 -19.42 9.68 84.04 0.81 -18.60 16 11 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 14 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.50 10.21 7.67 87.66 0.67 10.88 16 19 O -0.59 -17.74 15.56 -3.04 -0.05 -17.79 16 20 C -0.12 -1.41 4.23 29.85 0.13 -1.28 16 21 C -0.02 -0.25 4.99 29.85 0.15 -0.10 16 22 C -0.25 -3.45 5.35 -20.14 -0.11 -3.56 16 23 C 0.04 0.70 11.96 85.24 1.02 1.72 16 24 N -0.34 -6.38 12.58 -57.02 -0.72 -7.10 16 25 N -0.38 -4.93 4.01 -369.56 -1.48 -6.42 16 26 C 0.09 0.40 11.47 127.77 1.47 1.87 16 27 C 0.06 0.68 11.40 83.54 0.95 1.63 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 30 H 0.09 0.43 6.43 -2.39 -0.02 0.41 16 31 H 0.10 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.06 1.67 7.42 -2.38 -0.02 1.66 16 33 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.34 12.39 8.43 -89.70 -0.76 11.63 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 38 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 39 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.12 0.83 8.11 -2.38 -0.02 0.81 16 41 H 0.11 0.98 7.40 -2.39 -0.02 0.96 16 42 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 43 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 44 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -81.94 409.07 1.37 -80.57 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.51 Total: 36.69 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 9.09 Total: 24.54 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -9.15 Total: -134.01 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -81.94 1.37 -80.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481318303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.037 kcal (2) G-P(sol) polarization free energy of solvation -81.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds