Wall clock time and date at job start Tue Mar 31 2020 21:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37363 * 125.83402 * 2 1 4 4 N 1.29394 * 108.82907 * 180.02562 * 3 2 1 5 5 N 1.40164 * 108.14364 * 359.97438 * 4 3 2 6 6 C 1.46498 * 126.35078 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47576 * 270.02556 * 6 5 4 8 8 C 1.50700 * 109.47436 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99861 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.05547 * 326.41583 * 11 10 8 13 13 C 1.54267 * 110.03218 * 87.82957 * 11 10 8 14 14 C 1.54891 * 104.19324 * 95.67887 * 13 11 10 15 15 C 1.54888 * 102.75120 * 37.94011 * 14 13 11 16 16 C 1.53876 * 110.03560 * 204.99827 * 11 10 8 17 17 H 1.08998 * 110.02768 * 0.02562 * 16 11 10 18 18 C 1.53005 * 110.03214 * 121.37954 * 16 11 10 19 19 N 1.46495 * 109.46716 * 185.00298 * 18 16 11 20 20 C 1.36940 * 119.99784 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47408 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47391 * 120.00483 * 24 22 20 27 27 H 1.48509 * 109.47280 * 240.00079 * 24 22 20 28 28 C 1.34813 * 125.83259 * 180.32824 * 2 1 3 29 29 O 1.21811 * 126.30671 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47287 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47086 * 119.97647 * 1 2 3 32 32 H 1.09002 * 109.47144 * 239.98186 * 1 2 3 33 33 H 1.08004 * 125.57944 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.46791 * 150.02453 * 6 5 4 35 35 H 1.08996 * 109.47250 * 30.03025 * 6 5 4 36 36 H 1.09000 * 109.46800 * 59.99448 * 7 6 5 37 37 H 1.09003 * 109.46782 * 299.99982 * 7 6 5 38 38 H 0.97001 * 120.00044 * 359.97438 * 10 8 7 39 39 H 1.09004 * 110.48597 * 214.35526 * 13 11 10 40 40 H 1.08994 * 110.48679 * 337.00052 * 13 11 10 41 41 H 1.09005 * 110.75269 * 279.62515 * 14 13 11 42 42 H 1.09004 * 110.91555 * 156.33330 * 14 13 11 43 43 H 1.09000 * 110.48622 * 203.37816 * 15 14 13 44 44 H 1.08999 * 110.48451 * 80.73628 * 15 14 13 45 45 H 1.09001 * 109.46912 * 305.00022 * 18 16 11 46 46 H 1.08996 * 109.46774 * 65.00178 * 18 16 11 47 47 H 0.96997 * 120.00268 * 359.97438 * 19 18 16 48 48 H 0.96998 * 120.00047 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5109 -0.0013 7 6 5.1471 -1.8047 -1.4441 8 6 6.3780 -2.6742 -1.4451 9 8 6.8742 -3.0240 -0.3951 10 7 6.9280 -3.0622 -2.6127 11 6 8.1249 -3.9069 -2.6137 12 1 8.7573 -3.6602 -1.7609 13 6 7.7215 -5.3950 -2.5593 14 6 7.7323 -5.8457 -4.0411 15 6 8.9520 -5.0870 -4.6204 16 6 8.9073 -3.7112 -3.9241 17 1 8.3966 -2.9873 -4.5592 18 6 10.3275 -3.2302 -3.6198 19 7 11.0221 -2.9338 -4.8751 20 6 12.3157 -2.4851 -4.8524 21 1 12.8237 -2.3494 -3.9090 22 6 12.9741 -2.2047 -6.0418 23 7 12.3552 -2.3706 -7.1915 24 14 14.7384 -1.5920 -6.0107 25 1 15.2026 -1.4905 -4.6038 26 1 15.6059 -2.5431 -6.7512 27 1 14.8095 -0.2547 -6.6526 28 6 2.2542 -1.0930 -0.0063 29 8 1.8806 -2.2523 -0.0133 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3633 -0.5141 0.8898 33 1 1.9249 2.1373 -0.0004 34 1 4.5153 -2.4476 0.5125 35 1 5.5417 -0.9934 0.5121 36 1 5.3630 -0.8680 -1.9579 37 1 4.3367 -2.3223 -1.9575 38 1 6.5314 -2.7821 -3.4524 39 1 8.4481 -5.9663 -1.9815 40 1 6.7238 -5.5045 -2.1345 41 1 6.8140 -5.5420 -4.5439 42 1 7.8752 -6.9236 -4.1190 43 1 8.8521 -4.9718 -5.6997 44 1 9.8772 -5.6086 -4.3755 45 1 10.2826 -2.3293 -3.0079 46 1 10.8672 -4.0089 -3.0810 47 1 10.5660 -3.0560 -5.7224 48 1 12.8151 -2.1743 -8.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482682186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:20 Heat of formation + Delta-G solvation = 11.594976 kcal Electronic energy + Delta-G solvation = -28658.199836 eV Core-core repulsion = 24557.230170 eV Total energy + Delta-G solvation = -4100.969666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76619 -40.11452 -38.12673 -37.57311 -35.99720 -34.50517 -33.47446 -33.05032 -31.36191 -30.30299 -28.57829 -28.09298 -27.43855 -25.14530 -24.27484 -22.77772 -22.09133 -21.51408 -20.95836 -19.96650 -19.51441 -18.10085 -17.38695 -17.07478 -16.74620 -16.44545 -16.28571 -15.92748 -15.50777 -14.95700 -14.90876 -14.55740 -14.42440 -14.09423 -13.63904 -13.42753 -13.36350 -13.28900 -13.11297 -13.02871 -12.77615 -12.61996 -12.26495 -12.00160 -11.64346 -11.47916 -11.30278 -10.93828 -10.82003 -10.77324 -10.60650 -10.56524 -10.50357 -10.40414 -10.26225 -9.99611 -9.83869 -9.69073 -8.98496 -8.92579 -8.85831 -6.90370 -5.75727 -3.03863 1.37576 1.56969 2.31655 2.57451 2.69587 3.22057 3.44237 3.50290 3.52383 4.00693 4.31034 4.48634 4.53367 4.56706 4.68141 4.73052 4.80812 4.82466 4.88974 4.99055 5.09690 5.16563 5.31857 5.47437 5.48817 5.57196 5.57308 5.64257 5.70389 5.83224 5.83798 5.87488 5.92213 6.07598 6.14501 6.18912 6.23388 6.30044 6.50893 6.60704 6.62612 6.79732 6.92341 7.24563 7.47568 7.68940 7.72439 8.17416 8.43440 9.54831 10.12565 10.47644 11.47291 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.001995 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.611264 B =14034.330184 C =15066.332593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.251 3.749 4 N -0.278 5.278 5 N -0.450 5.450 6 C 0.177 3.823 7 C -0.161 4.161 8 C 0.521 3.479 9 O -0.542 6.542 10 N -0.716 5.716 11 C 0.145 3.855 12 H 0.094 0.906 13 C -0.130 4.130 14 C -0.126 4.126 15 C -0.112 4.112 16 C -0.103 4.103 17 H 0.077 0.923 18 C 0.161 3.839 19 N -0.731 5.731 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.642 3.358 29 O -0.552 6.552 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.400 0.600 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.861 4.727 12.914 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.048 4.048 4 N -0.099 5.099 5 N -0.271 5.271 6 C 0.056 3.944 7 C -0.203 4.203 8 C 0.306 3.694 9 O -0.420 6.420 10 N -0.367 5.367 11 C 0.040 3.960 12 H 0.112 0.888 13 C -0.169 4.169 14 C -0.163 4.163 15 C -0.150 4.150 16 C -0.122 4.122 17 H 0.095 0.905 18 C 0.033 3.967 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.341 3.659 29 O -0.425 6.425 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.235 0.765 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.562 3.938 13.752 29.292 hybrid contribution -0.169 0.434 -0.925 1.035 sum -25.730 4.372 12.827 29.081 Atomic orbital electron populations 1.21807 0.74143 1.04176 1.03986 1.45978 1.08940 1.06741 1.67646 1.25994 0.85858 0.94730 0.98213 1.77050 1.18137 0.92018 1.22680 1.49058 1.06237 1.03113 1.68730 1.21197 0.83325 0.93666 0.96172 1.22053 0.97290 1.01561 0.99354 1.20219 0.84783 0.80244 0.84124 1.90724 1.63286 1.56799 1.31164 1.46182 1.29916 1.52308 1.08286 1.21693 0.85312 0.89426 0.99535 0.88803 1.22738 1.01550 0.95456 0.97123 1.22543 0.98572 0.99858 0.95356 1.22371 0.98064 0.94568 0.99966 1.22225 0.97334 0.98051 0.94605 0.90463 1.20736 0.88966 0.96659 0.90301 1.42331 1.12726 1.79881 1.02540 1.19291 0.89146 1.35698 0.92658 0.91150 1.24733 0.98471 1.02608 0.95313 1.69670 1.36652 1.55412 0.96589 0.86116 0.84780 0.78080 0.77234 1.20553 1.21891 1.21918 1.16812 0.82160 0.85127 0.81809 1.91105 1.77739 1.15194 1.58473 0.88818 0.90433 0.90470 0.75276 0.87776 0.87619 0.87930 0.88451 0.76549 0.90751 0.91718 0.92025 0.91756 0.91291 0.90777 0.96419 0.96008 0.78283 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.30 11.08 59.85 0.66 0.96 16 2 N -0.56 -3.87 3.14 -130.10 -0.41 -4.27 16 3 C 0.25 1.28 12.61 -89.12 -1.12 0.15 16 4 N -0.28 -2.46 12.53 29.87 0.37 -2.09 16 5 N -0.45 -4.78 3.63 -65.12 -0.24 -5.01 16 6 C 0.18 1.88 5.68 -4.04 -0.02 1.86 16 7 C -0.16 -1.58 6.02 -27.88 -0.17 -1.75 16 8 C 0.52 6.54 7.83 -10.99 -0.09 6.45 16 9 O -0.54 -8.64 15.64 5.56 0.09 -8.55 16 10 N -0.72 -8.53 5.03 -52.72 -0.27 -8.79 16 11 C 0.15 2.02 2.90 -66.81 -0.19 1.82 16 12 H 0.09 1.49 7.10 -51.93 -0.37 1.12 16 13 C -0.13 -1.65 6.54 -25.07 -0.16 -1.82 16 14 C -0.13 -1.53 6.91 -24.74 -0.17 -1.70 16 15 C -0.11 -1.67 6.08 -25.08 -0.15 -1.83 16 16 C -0.10 -1.61 2.72 -89.50 -0.24 -1.86 16 17 H 0.08 1.21 7.62 -51.93 -0.40 0.81 16 18 C 0.16 3.26 5.32 -4.04 -0.02 3.24 16 19 N -0.73 -18.43 5.45 -59.91 -0.33 -18.76 16 20 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 21 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 C 0.64 7.25 8.60 -86.73 -0.75 6.50 16 29 O -0.55 -8.13 17.77 5.09 0.09 -8.04 16 30 H 0.09 -0.07 8.07 -51.93 -0.42 -0.49 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.23 -0.11 8.06 -52.48 -0.42 -0.53 16 34 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 3.91 8.32 -40.82 -0.34 3.57 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.22 7.76 -51.93 -0.40 0.82 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 47 H 0.38 10.07 7.55 -40.82 -0.31 9.76 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -37.73 401.01 -9.30 -47.03 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.68 Total: 7.71 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.68 Total: 4.66 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.14 Total: -66.47 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.18 Total: -16.59 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.73 -9.30 -47.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482682186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.628 kcal (2) G-P(sol) polarization free energy of solvation -37.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds