Wall clock time and date at job start Tue Mar 31 2020 21:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37363 * 125.83402 * 2 1 4 4 N 1.29394 * 108.82907 * 180.02562 * 3 2 1 5 5 N 1.40164 * 108.14364 * 359.97438 * 4 3 2 6 6 C 1.46498 * 126.35078 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47576 * 270.02556 * 6 5 4 8 8 C 1.50700 * 109.47436 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99861 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.05547 * 326.41583 * 11 10 8 13 13 C 1.54267 * 110.03218 * 87.82957 * 11 10 8 14 14 C 1.54891 * 104.19324 * 95.67887 * 13 11 10 15 15 C 1.54888 * 102.75120 * 37.94011 * 14 13 11 16 16 C 1.53876 * 110.03560 * 204.99827 * 11 10 8 17 17 H 1.08998 * 110.02768 * 0.02562 * 16 11 10 18 18 C 1.53005 * 110.03214 * 121.37954 * 16 11 10 19 19 N 1.46495 * 109.46716 * 185.00298 * 18 16 11 20 20 C 1.36940 * 119.99784 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00073 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47408 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47391 * 120.00483 * 24 22 20 27 27 H 1.48509 * 109.47280 * 240.00079 * 24 22 20 28 28 C 1.34813 * 125.83259 * 180.32824 * 2 1 3 29 29 O 1.21811 * 126.30671 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47287 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47086 * 119.97647 * 1 2 3 32 32 H 1.09002 * 109.47144 * 239.98186 * 1 2 3 33 33 H 1.08004 * 125.57944 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.46791 * 150.02453 * 6 5 4 35 35 H 1.08996 * 109.47250 * 30.03025 * 6 5 4 36 36 H 1.09000 * 109.46800 * 59.99448 * 7 6 5 37 37 H 1.09003 * 109.46782 * 299.99982 * 7 6 5 38 38 H 0.97001 * 120.00044 * 359.97438 * 10 8 7 39 39 H 1.09004 * 110.48597 * 214.35526 * 13 11 10 40 40 H 1.08994 * 110.48679 * 337.00052 * 13 11 10 41 41 H 1.09005 * 110.75269 * 279.62515 * 14 13 11 42 42 H 1.09004 * 110.91555 * 156.33330 * 14 13 11 43 43 H 1.09000 * 110.48622 * 203.37816 * 15 14 13 44 44 H 1.08999 * 110.48451 * 80.73628 * 15 14 13 45 45 H 1.09001 * 109.46912 * 305.00022 * 18 16 11 46 46 H 1.08996 * 109.46774 * 65.00178 * 18 16 11 47 47 H 0.96997 * 120.00268 * 359.97438 * 19 18 16 48 48 H 0.96998 * 120.00047 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5109 -0.0013 7 6 5.1471 -1.8047 -1.4441 8 6 6.3780 -2.6742 -1.4451 9 8 6.8742 -3.0240 -0.3951 10 7 6.9280 -3.0622 -2.6127 11 6 8.1249 -3.9069 -2.6137 12 1 8.7573 -3.6602 -1.7609 13 6 7.7215 -5.3950 -2.5593 14 6 7.7323 -5.8457 -4.0411 15 6 8.9520 -5.0870 -4.6204 16 6 8.9073 -3.7112 -3.9241 17 1 8.3966 -2.9873 -4.5592 18 6 10.3275 -3.2302 -3.6198 19 7 11.0221 -2.9338 -4.8751 20 6 12.3157 -2.4851 -4.8524 21 1 12.8237 -2.3494 -3.9090 22 6 12.9741 -2.2047 -6.0418 23 7 12.3552 -2.3706 -7.1915 24 14 14.7384 -1.5920 -6.0107 25 1 15.2026 -1.4905 -4.6038 26 1 15.6059 -2.5431 -6.7512 27 1 14.8095 -0.2547 -6.6526 28 6 2.2542 -1.0930 -0.0063 29 8 1.8806 -2.2523 -0.0133 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3633 -0.5141 0.8898 33 1 1.9249 2.1373 -0.0004 34 1 4.5153 -2.4476 0.5125 35 1 5.5417 -0.9934 0.5121 36 1 5.3630 -0.8680 -1.9579 37 1 4.3367 -2.3223 -1.9575 38 1 6.5314 -2.7821 -3.4524 39 1 8.4481 -5.9663 -1.9815 40 1 6.7238 -5.5045 -2.1345 41 1 6.8140 -5.5420 -4.5439 42 1 7.8752 -6.9236 -4.1190 43 1 8.8521 -4.9718 -5.6997 44 1 9.8772 -5.6086 -4.3755 45 1 10.2826 -2.3293 -3.0079 46 1 10.8672 -4.0089 -3.0810 47 1 10.5660 -3.0560 -5.7224 48 1 12.8151 -2.1743 -8.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482682186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:18 Heat of formation + Delta-G solvation = -14.351602 kcal Electronic energy + Delta-G solvation = -28659.324964 eV Core-core repulsion = 24557.230170 eV Total energy + Delta-G solvation = -4102.094794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.40283 -41.21354 -39.33228 -38.41558 -36.69044 -36.31644 -34.65211 -33.76465 -33.25571 -31.07029 -30.20126 -28.92321 -28.13913 -26.43757 -25.61902 -23.91517 -23.29506 -22.32605 -21.91291 -21.12122 -20.74275 -19.24102 -18.77192 -17.95855 -17.68417 -17.51397 -17.09524 -16.73713 -16.54659 -16.41689 -15.93823 -15.81698 -15.46281 -15.21256 -14.98942 -14.76432 -14.52982 -14.34508 -14.25468 -13.88888 -13.46715 -13.38938 -13.27652 -13.19256 -12.88651 -12.85656 -12.59801 -12.46935 -12.37937 -12.12961 -11.95134 -11.88591 -11.73866 -11.63883 -11.47728 -11.36926 -11.16716 -10.95962 -10.86470 -10.07852 -9.66524 -9.00824 -7.96583 -5.24982 0.72904 1.09632 1.46739 1.47010 1.54429 1.55906 1.57463 2.08311 2.35156 2.55172 3.36530 3.44427 3.46812 3.62203 3.66664 3.83271 3.92252 3.98726 4.12694 4.15414 4.30379 4.33551 4.40061 4.46692 4.50541 4.52373 4.63125 4.65812 4.67039 4.69738 4.76095 4.82307 4.96427 4.97951 5.01145 5.05726 5.10129 5.17384 5.24422 5.35259 5.46971 5.49537 5.60100 5.69791 6.26084 6.49386 6.63707 6.93640 7.18193 7.32949 8.07396 8.32972 9.26830 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.001995 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.611264 B =14034.330184 C =15066.332593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.318 5.318 5 N -0.458 5.458 6 C 0.179 3.821 7 C -0.144 4.144 8 C 0.521 3.479 9 O -0.578 6.578 10 N -0.708 5.708 11 C 0.152 3.848 12 H 0.072 0.928 13 C -0.125 4.125 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.091 4.091 17 H 0.081 0.919 18 C 0.161 3.839 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.269 1.269 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.625 3.375 29 O -0.599 6.599 30 H 0.142 0.858 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.289 0.711 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.010 0.990 46 H 0.018 0.982 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.575 6.288 13.024 32.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.139 5.139 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.185 4.185 8 C 0.308 3.692 9 O -0.458 6.458 10 N -0.360 5.360 11 C 0.047 3.953 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.110 4.110 17 H 0.099 0.901 18 C 0.034 3.966 19 N -0.382 5.382 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.266 4.266 23 N -0.617 5.617 24 Si 0.802 3.198 25 H -0.194 1.194 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.324 3.676 29 O -0.476 6.476 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.304 0.696 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.028 0.972 46 H 0.036 0.964 47 H 0.209 0.791 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -27.315 5.538 13.876 31.134 hybrid contribution 0.288 0.028 -0.892 0.937 sum -27.027 5.566 12.984 30.497 Atomic orbital electron populations 1.22165 0.71793 1.07220 1.03555 1.46201 1.10216 1.05949 1.66224 1.27192 0.84406 0.96105 0.94083 1.77079 1.20423 0.90520 1.25877 1.49028 1.05839 1.04164 1.68690 1.21026 0.83571 0.93199 0.96456 1.21914 0.95921 1.01542 0.99111 1.20640 0.85131 0.79893 0.83507 1.90711 1.64476 1.58191 1.32470 1.46063 1.29137 1.51831 1.08927 1.21444 0.85681 0.90767 0.97440 0.90971 1.22688 1.01745 0.94198 0.97692 1.22474 0.97703 1.00291 0.94426 1.22305 0.98735 0.94212 0.99590 1.22059 0.94670 0.98542 0.95716 0.90069 1.20841 0.91314 0.96139 0.88274 1.42473 1.12215 1.79718 1.03788 1.19644 0.90441 1.35038 0.92732 0.91111 1.25535 1.02495 1.03495 0.95051 1.69809 1.38168 1.56735 0.96984 0.85089 0.80000 0.77178 0.77577 1.19393 1.21858 1.21849 1.17143 0.82856 0.85547 0.82102 1.91050 1.78572 1.17297 1.60712 0.84012 0.90894 0.90986 0.69558 0.89477 0.88042 0.86459 0.87582 0.75002 0.90883 0.91156 0.90339 0.90376 0.91909 0.92632 0.97186 0.96387 0.79111 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.08 127.77 1.42 1.73 16 2 N -0.56 -6.49 3.14 -683.68 -2.15 -8.64 16 3 C 0.28 1.92 12.61 179.82 2.27 4.18 16 4 N -0.32 -5.09 12.53 -59.41 -0.74 -5.83 16 5 N -0.46 -9.59 3.63 -478.02 -1.73 -11.33 16 6 C 0.18 3.91 5.68 86.38 0.49 4.40 16 7 C -0.14 -2.76 6.02 29.85 0.18 -2.58 16 8 C 0.52 13.00 7.83 87.66 0.69 13.68 16 9 O -0.58 -18.82 15.64 -3.04 -0.05 -18.87 16 10 N -0.71 -16.29 5.03 -439.11 -2.21 -18.50 16 11 C 0.15 4.18 2.90 45.72 0.13 4.31 16 12 H 0.07 2.34 7.10 -2.39 -0.02 2.32 16 13 C -0.12 -3.03 6.54 31.67 0.21 -2.82 16 14 C -0.11 -2.50 6.91 31.89 0.22 -2.28 16 15 C -0.11 -3.25 6.08 31.67 0.19 -3.06 16 16 C -0.09 -2.82 2.72 -10.07 -0.03 -2.85 16 17 H 0.08 2.48 7.62 -2.39 -0.02 2.47 16 18 C 0.16 6.63 5.32 86.38 0.46 7.09 16 19 N -0.74 -37.84 5.45 -343.46 -1.87 -39.71 16 20 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 24 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 C 0.62 13.99 8.60 178.99 1.54 15.53 16 29 O -0.60 -18.24 17.77 -4.70 -0.08 -18.32 16 30 H 0.14 -0.89 8.07 -2.39 -0.02 -0.91 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 33 H 0.29 -1.92 8.06 -2.91 -0.02 -1.94 16 34 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.10 2.24 8.10 -2.39 -0.02 2.22 16 36 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 7.42 8.32 -92.71 -0.77 6.65 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.84 7.76 -2.39 -0.02 1.82 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.02 0.76 8.01 -2.39 -0.02 0.75 16 47 H 0.38 20.11 7.55 -92.71 -0.70 19.41 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -84.69 401.01 2.05 -82.64 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.49 Total: 28.24 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 9.07 Total: 20.35 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -8.42 Total: -142.74 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.13 Total: -37.19 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -84.69 2.05 -82.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482682186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.286 kcal (2) G-P(sol) polarization free energy of solvation -84.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds