Wall clock time and date at job start Tue Mar 31 2020 20:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46902 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.46897 * 110.99930 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99998 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99828 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00176 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99724 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00147 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47073 * 60.00011 * 15 13 11 17 17 H 1.48500 * 109.47220 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47140 * 300.00114 * 15 13 11 19 19 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99928 * 0.28128 * 19 3 2 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 3 23 23 N 1.36884 * 126.58864 * 264.68309 * 22 21 19 24 24 H 0.96999 * 126.39659 * 0.02562 * 23 22 21 25 25 C 1.35040 * 107.20193 * 179.90414 * 23 22 21 26 26 N 1.30496 * 108.70283 * 0.36694 * 25 23 22 27 27 C 1.34128 * 109.25476 * 359.77143 * 26 25 23 28 28 C 1.50699 * 125.98938 * 179.97438 * 27 26 25 29 29 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 31 31 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 32 32 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 35 35 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 36 36 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 37 37 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 38 38 H 1.00894 * 110.99712 * 56.04829 * 6 5 4 39 39 H 1.09001 * 109.47054 * 300.00083 * 7 6 5 40 40 H 1.09007 * 109.47252 * 60.00123 * 7 6 5 41 41 H 0.96997 * 119.99520 * 0.02562 * 10 8 7 42 42 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.46965 * 299.72211 * 21 19 3 44 44 H 1.08994 * 109.46990 * 59.72065 * 21 19 3 45 45 H 1.08006 * 125.64740 * 180.10538 * 25 23 22 46 46 H 1.09000 * 109.47429 * 270.00103 * 28 27 26 47 47 H 1.09000 * 109.47229 * 30.00186 * 28 27 26 48 48 H 1.09002 * 109.47125 * 149.99725 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9526 2.5243 -2.9823 7 6 5.3332 2.3148 -3.4384 8 6 5.5464 3.0383 -4.7431 9 8 4.6379 3.6669 -5.2436 10 7 6.7471 2.9876 -5.3534 11 6 6.9412 3.6462 -6.5401 12 1 6.1319 4.2052 -6.9860 13 6 8.1788 3.5935 -7.1695 14 7 9.1634 2.9128 -6.6271 15 14 8.4431 4.4902 -8.7867 16 1 8.2008 5.9425 -8.5928 17 1 9.8389 4.2790 -9.2475 18 1 7.4999 3.9627 -9.8051 19 6 2.2429 2.0167 1.1672 20 8 2.6468 3.1603 1.1671 21 6 1.9977 1.3042 2.4723 22 6 2.3292 2.2258 3.6176 23 7 3.5150 2.2870 4.2987 24 1 4.3019 1.7441 4.1343 25 6 3.3856 3.2460 5.2406 26 7 2.1853 3.7517 5.1607 27 6 1.5139 3.1433 4.1716 28 6 0.0957 3.4350 3.7540 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8406 38 1 3.7425 3.5080 -2.9045 39 1 6.0255 2.7017 -2.6906 40 1 5.5110 1.2488 -3.5812 41 1 7.4738 2.4851 -4.9530 42 1 10.0274 2.8763 -7.0663 43 1 0.9499 1.0100 2.5343 44 1 2.6281 0.4167 2.5258 45 1 4.1478 3.5422 5.9462 46 1 -0.5873 2.8002 4.3185 47 1 -0.1336 4.4820 3.9525 48 1 -0.0180 3.2340 2.6887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482965825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:45 Heat of formation + Delta-G solvation = -16.147874 kcal Electronic energy + Delta-G solvation = -28489.390422 eV Core-core repulsion = 24387.217736 eV Total energy + Delta-G solvation = -4102.172686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39900 -40.18774 -38.28727 -36.64908 -35.34704 -33.86450 -33.36972 -33.09174 -31.41653 -31.14643 -29.76447 -28.60268 -26.48563 -25.62602 -24.01112 -23.72916 -22.36443 -21.85025 -20.13939 -19.44452 -19.07745 -18.02664 -17.89455 -17.54657 -16.60789 -16.20228 -15.71556 -15.56147 -15.25816 -14.85341 -14.53475 -14.35873 -14.22365 -13.92930 -13.86093 -13.61948 -13.52404 -13.21446 -13.08185 -13.02358 -12.94432 -12.61841 -12.35727 -12.31980 -12.14190 -12.01908 -11.54953 -11.51486 -11.49460 -11.11648 -10.97066 -10.44089 -10.23250 -10.21380 -10.19770 -10.00481 -9.49971 -9.02709 -8.48053 -8.46439 -8.09380 -7.96176 -6.41554 -3.82379 1.67383 2.32626 2.60322 2.85981 2.92701 3.20534 3.25949 3.30674 3.90829 4.11713 4.15905 4.25713 4.38142 4.45676 4.47468 4.55626 4.75695 4.91955 4.94648 4.97228 5.01852 5.05947 5.16238 5.17375 5.26871 5.34670 5.36671 5.47955 5.48507 5.66893 5.72059 5.75619 5.78911 5.83301 5.88155 5.89873 5.97284 6.20058 6.28929 6.50139 7.04250 7.11923 7.16360 7.55218 7.61919 7.82334 7.90337 8.06116 8.61331 9.17810 9.54124 10.05678 10.76161 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.001866 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.914314 B =15000.425176 C =15846.421143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 N -0.611 5.611 4 C 0.117 3.883 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.511 3.489 20 O -0.521 6.521 21 C -0.063 4.063 22 C -0.011 4.011 23 N -0.563 5.563 24 H 0.418 0.582 25 C 0.191 3.809 26 N -0.492 5.492 27 C 0.021 3.979 28 C -0.068 4.068 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.208 0.792 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -10.892 23.322 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.345 5.345 4 C -0.005 4.005 5 C -0.083 4.083 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.297 3.703 20 O -0.396 6.396 21 C -0.104 4.104 22 C -0.126 4.126 23 N -0.166 5.166 24 H 0.256 0.744 25 C -0.093 4.093 26 N -0.212 5.212 27 C -0.108 4.108 28 C -0.126 4.126 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.171 0.829 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.225 0.775 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.658 -9.729 23.027 28.978 hybrid contribution 2.157 -0.392 -0.518 2.253 sum -12.502 -10.121 22.508 27.665 Atomic orbital electron populations 1.22231 0.95503 1.02569 1.02889 1.21652 0.94780 0.82183 1.03608 1.47981 1.66085 1.14503 1.05945 1.21411 0.96501 0.98785 0.83834 1.22244 0.95985 0.99579 0.90540 1.60013 1.23719 1.18406 1.27808 1.21651 0.89054 1.01166 0.96119 1.19788 0.83993 0.86282 0.87313 1.90522 1.42361 1.46530 1.67246 1.41852 1.10631 1.46126 1.21416 1.19662 0.97871 1.27638 0.97734 0.87940 1.25270 0.95176 0.97642 0.99902 1.69601 1.03180 1.41421 1.40189 0.85904 0.77155 0.79734 0.81345 1.19897 1.20991 1.19863 1.20526 0.77804 0.86903 0.85028 1.90776 1.44221 1.17530 1.87039 1.20087 1.04739 0.96851 0.88714 1.20154 0.87836 1.04855 0.99763 1.43129 1.13586 1.31791 1.28093 0.74447 1.24893 0.97282 0.91225 0.95898 1.70178 1.04195 1.26701 1.20116 1.20429 0.97692 0.96345 0.96329 1.20033 0.89410 1.02674 1.00462 0.91227 0.92396 0.91761 0.89616 0.90437 0.89268 0.89728 0.95364 0.91211 0.82932 0.93916 0.89662 0.77476 0.91830 0.86632 0.88262 0.77520 0.91474 0.90971 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.10 0.52 5.94 -4.04 -0.02 0.49 16 3 N -0.61 -5.29 2.47 -173.68 -0.43 -5.72 16 4 C 0.12 1.29 5.67 -4.04 -0.02 1.27 16 5 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 6 N -0.67 -11.05 6.12 -115.05 -0.70 -11.75 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.63 7.82 -10.98 -0.09 10.54 16 9 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 10 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 11 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 15 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.51 5.24 7.67 -10.98 -0.08 5.15 16 20 O -0.52 -7.89 15.61 5.55 0.09 -7.80 16 21 C -0.06 -0.43 4.37 -29.03 -0.13 -0.55 16 22 C -0.01 -0.10 5.73 -81.60 -0.47 -0.57 16 23 N -0.56 -4.42 6.15 -10.30 -0.06 -4.49 16 24 H 0.42 1.96 8.96 -40.82 -0.37 1.60 16 25 C 0.19 1.70 13.04 -90.38 -1.18 0.52 16 26 N -0.49 -6.06 11.25 -10.88 -0.12 -6.18 16 27 C 0.02 0.24 7.09 -82.86 -0.59 -0.34 16 28 C -0.07 -0.62 10.13 36.00 0.36 -0.26 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.25 7.24 -51.93 -0.38 -0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.24 6.43 -51.93 -0.33 -0.09 16 34 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.08 1.10 7.42 -51.93 -0.39 0.71 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.35 6.19 8.43 -39.29 -0.33 5.86 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.12 0.55 7.11 -51.93 -0.37 0.18 16 44 H 0.10 0.41 7.40 -51.93 -0.38 0.03 16 45 H 0.21 1.00 8.06 -52.48 -0.42 0.57 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -37.73 405.24 -8.95 -46.69 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -7.43 Total: 12.27 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.13 Total: 9.26 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -0.65 Total: -66.74 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.73 -8.95 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482965825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.538 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds