Wall clock time and date at job start Tue Mar 31 2020 20:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46902 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.46897 * 110.99930 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99998 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99828 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00176 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99724 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00147 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47073 * 60.00011 * 15 13 11 17 17 H 1.48500 * 109.47220 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47140 * 300.00114 * 15 13 11 19 19 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99928 * 0.28128 * 19 3 2 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 3 23 23 N 1.36884 * 126.58864 * 264.68309 * 22 21 19 24 24 H 0.96999 * 126.39659 * 0.02562 * 23 22 21 25 25 C 1.35040 * 107.20193 * 179.90414 * 23 22 21 26 26 N 1.30496 * 108.70283 * 0.36694 * 25 23 22 27 27 C 1.34128 * 109.25476 * 359.77143 * 26 25 23 28 28 C 1.50699 * 125.98938 * 179.97438 * 27 26 25 29 29 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 31 31 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 32 32 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 35 35 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 36 36 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 37 37 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 38 38 H 1.00894 * 110.99712 * 56.04829 * 6 5 4 39 39 H 1.09001 * 109.47054 * 300.00083 * 7 6 5 40 40 H 1.09007 * 109.47252 * 60.00123 * 7 6 5 41 41 H 0.96997 * 119.99520 * 0.02562 * 10 8 7 42 42 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.46965 * 299.72211 * 21 19 3 44 44 H 1.08994 * 109.46990 * 59.72065 * 21 19 3 45 45 H 1.08006 * 125.64740 * 180.10538 * 25 23 22 46 46 H 1.09000 * 109.47429 * 270.00103 * 28 27 26 47 47 H 1.09000 * 109.47229 * 30.00186 * 28 27 26 48 48 H 1.09002 * 109.47125 * 149.99725 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9526 2.5243 -2.9823 7 6 5.3332 2.3148 -3.4384 8 6 5.5464 3.0383 -4.7431 9 8 4.6379 3.6669 -5.2436 10 7 6.7471 2.9876 -5.3534 11 6 6.9412 3.6462 -6.5401 12 1 6.1319 4.2052 -6.9860 13 6 8.1788 3.5935 -7.1695 14 7 9.1634 2.9128 -6.6271 15 14 8.4431 4.4902 -8.7867 16 1 8.2008 5.9425 -8.5928 17 1 9.8389 4.2790 -9.2475 18 1 7.4999 3.9627 -9.8051 19 6 2.2429 2.0167 1.1672 20 8 2.6468 3.1603 1.1671 21 6 1.9977 1.3042 2.4723 22 6 2.3292 2.2258 3.6176 23 7 3.5150 2.2870 4.2987 24 1 4.3019 1.7441 4.1343 25 6 3.3856 3.2460 5.2406 26 7 2.1853 3.7517 5.1607 27 6 1.5139 3.1433 4.1716 28 6 0.0957 3.4350 3.7540 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 4.3884 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8406 38 1 3.7425 3.5080 -2.9045 39 1 6.0255 2.7017 -2.6906 40 1 5.5110 1.2488 -3.5812 41 1 7.4738 2.4851 -4.9530 42 1 10.0274 2.8763 -7.0663 43 1 0.9499 1.0100 2.5343 44 1 2.6281 0.4167 2.5258 45 1 4.1478 3.5422 5.9462 46 1 -0.5873 2.8002 4.3185 47 1 -0.1336 4.4820 3.9525 48 1 -0.0180 3.2340 2.6887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482965825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:44 Heat of formation + Delta-G solvation = -44.633521 kcal Electronic energy + Delta-G solvation = -28490.625653 eV Core-core repulsion = 24387.217736 eV Total energy + Delta-G solvation = -4103.407916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.06267 -40.96772 -40.17229 -37.62303 -36.51879 -35.83026 -34.04750 -33.82009 -33.30023 -32.05254 -30.52818 -29.55800 -27.75104 -26.71489 -25.52311 -24.27206 -23.38063 -22.57853 -21.22220 -20.78374 -20.03979 -19.83539 -18.65500 -18.28322 -17.88199 -17.29202 -17.06528 -16.55941 -16.42045 -16.04169 -15.85434 -15.56737 -15.34851 -14.99516 -14.88676 -14.74231 -14.31919 -14.21810 -13.96342 -13.72239 -13.66636 -13.61963 -13.50063 -13.36052 -13.14131 -13.06442 -12.93958 -12.73237 -12.61128 -12.45265 -12.13406 -12.06290 -11.91239 -11.52647 -11.01511 -10.93962 -10.74892 -10.42084 -10.04668 -9.75118 -9.45877 -9.16420 -8.48692 -5.97801 1.00272 1.38700 1.40697 1.51796 1.58425 1.90775 2.01404 2.18059 2.27902 2.32175 2.96113 3.18003 3.48055 3.56475 3.70291 3.87240 3.99313 4.02675 4.12319 4.15177 4.26944 4.36387 4.41250 4.44272 4.46033 4.47962 4.52081 4.55562 4.66110 4.79834 4.83659 4.90294 4.98227 5.00312 5.04112 5.07859 5.24108 5.38643 5.45426 5.52174 5.81234 5.82102 6.03618 6.24250 6.38756 6.57056 6.57836 7.09671 7.14135 7.16658 7.52448 8.07711 8.68447 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.001866 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.914314 B =15000.425176 C =15846.421143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 N -0.604 5.604 4 C 0.124 3.876 5 C 0.057 3.943 6 N -0.677 5.677 7 C 0.067 3.933 8 C 0.436 3.564 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.271 1.271 19 C 0.508 3.492 20 O -0.579 6.579 21 C -0.054 4.054 22 C -0.014 4.014 23 N -0.555 5.555 24 H 0.433 0.567 25 C 0.189 3.811 26 N -0.540 5.540 27 C -0.016 4.016 28 C -0.064 4.064 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.090 0.910 38 H 0.342 0.658 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.241 0.759 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 -13.384 23.961 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 N -0.337 5.337 4 C 0.000 4.000 5 C -0.073 4.073 6 N -0.309 5.309 7 C -0.065 4.065 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.196 1.196 19 C 0.297 3.703 20 O -0.458 6.458 21 C -0.095 4.095 22 C -0.130 4.130 23 N -0.160 5.160 24 H 0.273 0.727 25 C -0.095 4.095 26 N -0.260 5.260 27 C -0.144 4.144 28 C -0.122 4.122 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.257 0.743 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.301 -12.301 23.682 30.277 hybrid contribution 2.027 0.358 -0.676 2.166 sum -12.274 -11.944 23.006 28.681 Atomic orbital electron populations 1.22215 0.94924 1.03606 1.02239 1.21980 0.95240 0.80019 1.05448 1.48049 1.65273 1.15729 1.04602 1.21185 0.95688 0.97766 0.85348 1.22256 0.96681 0.99998 0.88354 1.60044 1.22632 1.18085 1.30110 1.21519 0.90456 1.01580 0.92963 1.20828 0.82768 0.85367 0.88652 1.90491 1.43469 1.48156 1.68811 1.41918 1.11442 1.46345 1.21187 1.19643 0.98106 1.29331 0.99460 0.90291 1.26070 0.94419 0.97951 1.02883 1.69660 1.03494 1.41583 1.41292 0.84970 0.77667 0.78365 0.77221 1.19803 1.19377 1.19564 1.21138 0.76581 0.86290 0.86289 1.90760 1.47034 1.20151 1.87864 1.20193 1.07005 0.96829 0.85451 1.20489 0.87847 1.04677 0.99988 1.43148 1.13774 1.31557 1.27473 0.72662 1.25564 0.97072 0.90677 0.96152 1.70129 1.05954 1.28403 1.21552 1.20858 0.98871 0.97535 0.97169 1.20027 0.89343 1.02101 1.00760 0.89303 0.92105 0.93440 0.89027 0.87386 0.88320 0.92410 0.96426 0.89144 0.84032 0.92306 0.87187 0.76939 0.91223 0.84165 0.84694 0.74286 0.89610 0.92527 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 71.98 0.74 -0.29 16 2 C 0.09 0.64 5.94 86.38 0.51 1.15 16 3 N -0.60 -9.30 2.47 -821.80 -2.03 -11.34 16 4 C 0.12 2.64 5.67 86.38 0.49 3.13 16 5 C 0.06 1.38 6.01 86.30 0.52 1.90 16 6 N -0.68 -22.06 6.12 -517.91 -3.17 -25.24 16 7 C 0.07 2.38 6.17 85.56 0.53 2.90 16 8 C 0.44 21.26 7.82 87.66 0.69 21.95 16 9 O -0.62 -35.31 15.78 -3.06 -0.05 -35.36 16 10 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 11 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 15 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.51 9.71 7.67 87.66 0.67 10.38 16 20 O -0.58 -17.74 15.61 -3.04 -0.05 -17.79 16 21 C -0.05 -0.59 4.37 29.10 0.13 -0.46 16 22 C -0.01 -0.24 5.73 40.95 0.23 -0.01 16 23 N -0.56 -7.83 6.15 -186.49 -1.15 -8.98 16 24 H 0.43 3.09 8.96 -92.71 -0.83 2.26 16 25 C 0.19 3.21 13.04 180.26 2.35 5.56 16 26 N -0.54 -13.39 11.25 -188.32 -2.12 -15.51 16 27 C -0.02 -0.36 7.09 41.39 0.29 -0.07 16 28 C -0.06 -1.20 10.13 71.24 0.72 -0.48 16 29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 0.34 7.24 -2.39 -0.02 0.32 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.09 0.58 8.07 -2.39 -0.02 0.56 16 33 H 0.11 0.12 6.43 -2.39 -0.02 0.11 16 34 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 35 H 0.06 1.56 7.42 -2.38 -0.02 1.54 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.34 12.28 8.43 -89.70 -0.76 11.53 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 41 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 42 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.14 0.83 7.11 -2.38 -0.02 0.81 16 44 H 0.14 0.49 7.40 -2.39 -0.02 0.47 16 45 H 0.24 1.93 8.06 -2.91 -0.02 1.90 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.16 7.89 -2.39 -0.02 1.14 16 Total: -1.00 -85.26 405.24 -0.04 -85.30 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -1.31 Total: 37.78 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 9.15 Total: 26.90 kcal Atomic # 7 Polarization: -132.30 SS G_CDS: -9.81 Total: -142.11 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.10 Total: -53.14 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -85.26 -0.04 -85.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482965825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.664 kcal (2) G-P(sol) polarization free energy of solvation -85.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds