Wall clock time and date at job start Tue Mar 31 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46961 * 2 1 4 4 C 1.46496 * 120.00352 * 270.00003 * 3 2 1 5 5 C 1.50704 * 109.47056 * 270.00510 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00450 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47239 * 89.99207 * 9 7 5 11 11 H 1.48493 * 109.47018 * 209.99837 * 9 7 5 12 12 H 1.48505 * 109.46823 * 329.99385 * 9 7 5 13 13 C 1.34776 * 119.99801 * 90.00424 * 3 2 1 14 14 O 1.21282 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46895 * 110.99789 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47035 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47170 * 295.00626 * 18 17 16 20 20 C 1.52991 * 109.47237 * 174.99958 * 18 17 16 21 21 N 1.46505 * 109.46955 * 54.99785 * 18 17 16 22 22 C 1.34776 * 120.00192 * 204.99828 * 21 18 17 23 23 O 1.21603 * 119.99726 * 0.02562 * 22 21 18 24 24 C 1.47401 * 120.00174 * 180.02562 * 22 21 18 25 25 N 1.31614 * 125.86410 * 359.69132 * 24 22 21 26 26 C 1.33104 * 109.09668 * 179.83525 * 25 24 22 27 27 C 1.35570 * 108.34645 * 0.43207 * 26 25 24 28 28 N 1.35393 * 107.16089 * 359.73934 * 27 26 25 29 29 H 0.97003 * 126.44058 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46794 * 60.00269 * 1 2 3 31 31 H 1.09009 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46892 * 299.99690 * 1 2 3 33 33 H 1.09000 * 109.46892 * 240.00310 * 2 1 3 34 34 H 1.09002 * 109.46990 * 120.00456 * 2 1 3 35 35 H 1.09002 * 109.47248 * 30.00186 * 4 3 2 36 36 H 1.09000 * 109.47481 * 150.00438 * 4 3 2 37 37 H 0.96994 * 120.00664 * 180.02562 * 8 7 5 38 38 H 1.08992 * 109.46894 * 60.00096 * 15 13 3 39 39 H 1.09004 * 109.47113 * 300.00247 * 15 13 3 40 40 H 1.00902 * 111.00068 * 56.04268 * 16 15 13 41 41 H 1.08996 * 109.47424 * 299.99656 * 17 16 15 42 42 H 1.09002 * 109.47411 * 60.00282 * 17 16 15 43 43 H 1.09003 * 109.47519 * 299.99638 * 20 18 17 44 44 H 1.08997 * 109.47213 * 60.00408 * 20 18 17 45 45 H 1.09007 * 109.47274 * 180.02562 * 20 18 17 46 46 H 0.97001 * 119.99639 * 25.00515 * 21 18 17 47 47 H 1.07998 * 125.82374 * 180.14199 * 26 25 24 48 48 H 1.08000 * 126.41596 * 179.77812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0976 -3.4164 10 1 5.9776 0.8769 -4.2595 11 1 6.3928 3.2653 -4.1987 12 1 6.7737 1.9177 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0747 1.5464 4.8802 18 6 2.4165 2.5125 6.0163 19 1 3.4834 2.7349 5.9955 20 6 2.0552 1.8711 7.3574 21 7 1.6559 3.7532 5.8476 22 6 2.1178 4.9040 6.3757 23 8 3.1662 4.9125 6.9917 24 6 1.3522 6.1522 6.2065 25 7 0.2125 6.2761 5.5598 26 6 -0.1851 7.5450 5.6175 27 6 0.7382 8.2502 6.3161 28 7 1.7067 7.3807 6.6890 29 1 2.5030 7.5904 7.2019 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6878 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6754 3.5173 -4.4433 38 1 2.6212 0.4185 2.5301 39 1 0.9433 1.0123 2.5299 40 1 1.7841 3.0653 3.5216 41 1 1.0272 1.2542 4.9541 42 1 2.7052 0.6604 4.9552 43 1 0.9883 1.6488 7.3782 44 1 2.6212 0.9481 7.4829 45 1 2.2983 2.5596 8.1667 46 1 0.8197 3.7464 5.3560 47 1 -1.0869 7.9454 5.1783 48 1 0.7067 9.3074 6.5348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483225076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:22 Heat of formation + Delta-G solvation = -8.902042 kcal Electronic energy + Delta-G solvation = -29080.282635 eV Core-core repulsion = 24978.424152 eV Total energy + Delta-G solvation = -4101.858483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46577 -39.81322 -39.04813 -36.96424 -35.26057 -34.28994 -33.01857 -32.72117 -31.58882 -30.07186 -29.63388 -28.31096 -26.51499 -24.54699 -23.88102 -22.97948 -22.08727 -21.83942 -21.37824 -20.55486 -19.25822 -18.28919 -16.99713 -16.66057 -16.37291 -16.14467 -15.98512 -15.78471 -15.19418 -14.73153 -14.51350 -14.46005 -14.26113 -14.14846 -13.89412 -13.84293 -13.41019 -13.29923 -12.96661 -12.62392 -12.55775 -12.27364 -12.00424 -11.90606 -11.69915 -11.54049 -11.17231 -11.15165 -10.87107 -10.70627 -10.60249 -10.55871 -10.49204 -10.48329 -10.08510 -9.58637 -9.40879 -8.88268 -8.83941 -8.39438 -8.34876 -7.60807 -6.00113 -4.04400 1.10916 2.29798 2.36121 3.20376 3.25428 3.33158 3.39844 3.43396 3.50335 3.72698 4.04948 4.29412 4.49785 4.62752 4.70225 4.94283 4.94928 5.06123 5.08154 5.12723 5.27294 5.31717 5.34644 5.40845 5.44900 5.48636 5.61745 5.62295 5.67648 5.79283 5.80694 5.94318 6.03384 6.20774 6.24541 6.28402 6.48300 6.80529 6.83546 7.13252 7.15197 7.37398 7.49373 7.54569 7.60689 7.90884 7.96885 8.28493 8.48108 8.95675 9.17041 9.60673 11.07955 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002604 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.986801 B =10751.126203 C =11705.099325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.672 5.672 17 C 0.052 3.948 18 C 0.144 3.856 19 H 0.102 0.898 20 C -0.162 4.162 21 N -0.697 5.697 22 C 0.613 3.387 23 O -0.541 6.541 24 C 0.144 3.856 25 N -0.441 5.441 26 C -0.026 4.026 27 C -0.024 4.024 28 N -0.525 5.525 29 H 0.430 0.570 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.351 0.649 41 H 0.036 0.964 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.410 0.590 47 H 0.180 0.820 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 0.349 22.630 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.091 4.091 16 N -0.305 5.305 17 C -0.078 4.078 18 C 0.040 3.960 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.349 5.349 22 C 0.397 3.603 23 O -0.417 6.417 24 C -0.117 4.117 25 N -0.164 5.164 26 C -0.179 4.179 27 C -0.164 4.164 28 N -0.127 5.127 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.246 0.754 47 H 0.197 0.803 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.358 0.215 22.462 23.968 hybrid contribution 0.286 0.703 -0.121 0.769 sum -8.072 0.918 22.341 23.772 Atomic orbital electron populations 1.22225 0.96910 1.01323 1.02245 1.21397 0.93385 0.84367 1.02614 1.48247 1.64065 1.13208 1.07700 1.19241 0.96198 0.93607 0.78105 1.21450 0.96963 1.31744 1.06150 0.92481 1.24933 0.97818 0.94937 0.96451 1.69927 1.35695 1.33534 1.14339 0.86505 0.84803 0.77602 0.78577 1.20701 1.21125 1.19857 1.20173 0.78935 0.87149 0.84878 1.90688 1.44740 1.17956 1.86889 1.21916 0.99931 0.96698 0.90544 1.60049 1.63394 1.07159 0.99909 1.22304 0.99789 0.97153 0.88571 1.21149 0.98134 0.82528 0.94172 0.88010 1.22160 1.01934 1.01233 0.96759 1.45644 1.26549 1.07184 1.55478 1.16381 0.83445 0.81435 0.79049 1.90838 1.22689 1.85930 1.42255 1.22662 0.96390 0.87949 1.04702 1.70205 1.08829 1.20777 1.16551 1.22533 1.01860 0.89307 1.04241 1.23014 0.91453 0.97411 1.04484 1.42938 1.20820 1.07828 1.41064 0.73061 0.92029 0.92227 0.93230 0.89969 0.91863 0.95107 0.93974 0.92780 0.88607 0.92921 0.82858 0.94565 0.89076 0.92281 0.91056 0.91809 0.75447 0.80332 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.64 2.46 -175.06 -0.43 -13.07 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.30 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.50 10.53 7.71 -10.98 -0.08 10.44 16 14 O -0.53 -13.61 15.78 5.56 0.09 -13.52 16 15 C 0.04 0.61 4.72 -4.97 -0.02 0.58 16 16 N -0.67 -9.56 6.12 -115.06 -0.70 -10.27 16 17 C 0.05 0.51 5.30 -3.82 -0.02 0.49 16 18 C 0.14 1.48 2.88 -67.93 -0.20 1.29 16 19 H 0.10 1.28 7.58 -51.93 -0.39 0.88 16 20 C -0.16 -1.31 9.48 37.15 0.35 -0.96 16 21 N -0.70 -7.77 4.35 -54.89 -0.24 -8.01 16 22 C 0.61 7.96 7.78 -12.53 -0.10 7.86 16 23 O -0.54 -8.14 16.76 5.28 0.09 -8.05 16 24 C 0.14 1.74 7.95 -154.52 -1.23 0.51 16 25 N -0.44 -5.39 10.89 -11.26 -0.12 -5.51 16 26 C -0.03 -0.25 11.85 -17.95 -0.21 -0.46 16 27 C -0.02 -0.18 12.00 -16.93 -0.20 -0.38 16 28 N -0.52 -4.77 6.14 -10.78 -0.07 -4.84 16 29 H 0.43 3.01 8.96 -40.82 -0.37 2.65 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 33 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.10 1.27 7.40 -51.93 -0.38 0.88 16 39 H 0.05 0.64 7.18 -51.93 -0.37 0.27 16 40 H 0.35 5.35 7.28 -39.29 -0.29 5.06 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.41 4.26 7.83 -40.82 -0.32 3.94 16 47 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.19 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 405.19 15.07 6.11 6.11 Total: -1.00 -37.71 405.19 -8.77 -46.49 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.41 Total: 7.72 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.80 Total: 11.94 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.83 Total: -67.96 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.18 Total: -21.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.71 -8.77 -46.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483225076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.587 kcal (2) G-P(sol) polarization free energy of solvation -37.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds