Wall clock time and date at job start Tue Mar 31 2020 20:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46961 * 2 1 4 4 C 1.46496 * 120.00352 * 270.00003 * 3 2 1 5 5 C 1.50704 * 109.47056 * 270.00510 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00450 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47239 * 89.99207 * 9 7 5 11 11 H 1.48493 * 109.47018 * 209.99837 * 9 7 5 12 12 H 1.48505 * 109.46823 * 329.99385 * 9 7 5 13 13 C 1.34776 * 119.99801 * 90.00424 * 3 2 1 14 14 O 1.21282 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46895 * 110.99789 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47035 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47170 * 295.00626 * 18 17 16 20 20 C 1.52991 * 109.47237 * 174.99958 * 18 17 16 21 21 N 1.46505 * 109.46955 * 54.99785 * 18 17 16 22 22 C 1.34776 * 120.00192 * 204.99828 * 21 18 17 23 23 O 1.21603 * 119.99726 * 0.02562 * 22 21 18 24 24 C 1.47401 * 120.00174 * 180.02562 * 22 21 18 25 25 N 1.31614 * 125.86410 * 359.69132 * 24 22 21 26 26 C 1.33104 * 109.09668 * 179.83525 * 25 24 22 27 27 C 1.35570 * 108.34645 * 0.43207 * 26 25 24 28 28 N 1.35393 * 107.16089 * 359.73934 * 27 26 25 29 29 H 0.97003 * 126.44058 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46794 * 60.00269 * 1 2 3 31 31 H 1.09009 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46892 * 299.99690 * 1 2 3 33 33 H 1.09000 * 109.46892 * 240.00310 * 2 1 3 34 34 H 1.09002 * 109.46990 * 120.00456 * 2 1 3 35 35 H 1.09002 * 109.47248 * 30.00186 * 4 3 2 36 36 H 1.09000 * 109.47481 * 150.00438 * 4 3 2 37 37 H 0.96994 * 120.00664 * 180.02562 * 8 7 5 38 38 H 1.08992 * 109.46894 * 60.00096 * 15 13 3 39 39 H 1.09004 * 109.47113 * 300.00247 * 15 13 3 40 40 H 1.00902 * 111.00068 * 56.04268 * 16 15 13 41 41 H 1.08996 * 109.47424 * 299.99656 * 17 16 15 42 42 H 1.09002 * 109.47411 * 60.00282 * 17 16 15 43 43 H 1.09003 * 109.47519 * 299.99638 * 20 18 17 44 44 H 1.08997 * 109.47213 * 60.00408 * 20 18 17 45 45 H 1.09007 * 109.47274 * 180.02562 * 20 18 17 46 46 H 0.97001 * 119.99639 * 25.00515 * 21 18 17 47 47 H 1.07998 * 125.82374 * 180.14199 * 26 25 24 48 48 H 1.08000 * 126.41596 * 179.77812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0976 -3.4164 10 1 5.9776 0.8769 -4.2595 11 1 6.3928 3.2653 -4.1987 12 1 6.7737 1.9177 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0747 1.5464 4.8802 18 6 2.4165 2.5125 6.0163 19 1 3.4834 2.7349 5.9955 20 6 2.0552 1.8711 7.3574 21 7 1.6559 3.7532 5.8476 22 6 2.1178 4.9040 6.3757 23 8 3.1662 4.9125 6.9917 24 6 1.3522 6.1522 6.2065 25 7 0.2125 6.2761 5.5598 26 6 -0.1851 7.5450 5.6175 27 6 0.7382 8.2502 6.3161 28 7 1.7067 7.3807 6.6890 29 1 2.5030 7.5904 7.2019 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6878 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6754 3.5173 -4.4433 38 1 2.6212 0.4185 2.5301 39 1 0.9433 1.0123 2.5299 40 1 1.7841 3.0653 3.5216 41 1 1.0272 1.2542 4.9541 42 1 2.7052 0.6604 4.9552 43 1 0.9883 1.6488 7.3782 44 1 2.6212 0.9481 7.4829 45 1 2.2983 2.5596 8.1667 46 1 0.8197 3.7464 5.3560 47 1 -1.0869 7.9454 5.1783 48 1 0.7067 9.3074 6.5348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483225076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:20 Heat of formation + Delta-G solvation = -39.137633 kcal Electronic energy + Delta-G solvation = -29081.593749 eV Core-core repulsion = 24978.424152 eV Total energy + Delta-G solvation = -4103.169597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.20955 -40.85464 -40.52816 -37.96979 -36.89923 -35.40728 -34.83202 -33.77795 -32.45783 -31.58721 -30.38862 -29.77479 -28.04234 -25.67028 -24.97365 -24.42142 -23.62443 -22.54515 -22.18479 -21.41870 -20.16890 -19.72226 -18.63596 -18.03431 -17.77455 -17.38530 -17.09228 -16.73199 -16.63767 -16.15257 -15.83799 -15.53463 -15.34163 -14.97498 -14.91183 -14.70960 -14.56432 -14.51120 -14.26283 -14.07521 -13.61482 -13.41662 -13.26485 -13.13694 -13.10937 -12.89227 -12.71595 -12.65464 -12.46550 -12.16573 -12.00280 -11.80854 -11.70923 -11.47370 -11.37393 -11.34577 -10.64172 -10.55491 -10.28334 -9.57104 -9.45386 -9.32077 -8.22187 -6.36923 0.30036 1.34973 1.38656 1.48915 1.53735 1.62361 1.88884 2.26950 2.33801 2.41807 2.52300 3.06838 3.14400 3.29795 3.74397 3.82076 4.03814 4.13698 4.19175 4.28994 4.33882 4.34782 4.45879 4.47225 4.50563 4.67440 4.68481 4.73016 4.76794 4.93524 4.95905 5.01631 5.04311 5.07313 5.22659 5.27849 5.39398 5.41582 5.59032 5.59588 5.84909 5.96610 6.07811 6.12572 6.25961 6.29008 6.71627 6.77301 6.85926 7.01495 7.29505 7.55294 8.84696 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002604 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.986801 B =10751.126203 C =11705.099325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.059 3.941 16 N -0.697 5.697 17 C 0.058 3.942 18 C 0.143 3.857 19 H 0.073 0.927 20 C -0.152 4.152 21 N -0.691 5.691 22 C 0.606 3.394 23 O -0.574 6.574 24 C 0.105 3.895 25 N -0.463 5.463 26 C -0.055 4.055 27 C 0.004 3.996 28 N -0.520 5.520 29 H 0.438 0.562 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.021 0.979 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.341 0.659 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.413 0.587 47 H 0.201 0.799 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 -1.336 24.037 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.200 1.200 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.072 4.072 16 N -0.330 5.330 17 C -0.071 4.071 18 C 0.039 3.961 19 H 0.091 0.909 20 C -0.211 4.211 21 N -0.342 5.342 22 C 0.391 3.609 23 O -0.453 6.453 24 C -0.154 4.154 25 N -0.186 5.186 26 C -0.207 4.207 27 C -0.136 4.136 28 N -0.123 5.123 29 H 0.279 0.721 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.160 0.840 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.249 0.751 47 H 0.218 0.782 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.947 -1.563 23.885 25.554 hybrid contribution 0.382 1.315 -0.562 1.481 sum -8.564 -0.247 23.323 24.847 Atomic orbital electron populations 1.22153 0.94559 1.03500 1.01603 1.21761 0.95286 0.81256 1.04003 1.48283 1.64076 1.15190 1.06108 1.18648 0.95150 0.91370 0.80619 1.21724 0.97974 1.31887 1.06436 0.93006 1.25867 1.02400 0.94485 0.96498 1.70048 1.37785 1.34252 1.14798 0.85421 0.79010 0.78256 0.78153 1.18569 1.20666 1.19970 1.21393 0.77305 0.86695 0.86697 1.90652 1.47508 1.20936 1.87949 1.21831 1.02514 0.96147 0.86734 1.60030 1.64148 1.07304 1.01542 1.22389 1.01876 0.96930 0.85882 1.21204 0.96524 0.82482 0.95863 0.90898 1.22077 1.03172 1.01305 0.94507 1.45675 1.26497 1.07194 1.54794 1.16637 0.83216 0.82263 0.78748 1.90799 1.24037 1.86511 1.43944 1.22511 0.97212 0.88618 1.07082 1.70127 1.09115 1.22559 1.16796 1.23112 1.03430 0.88794 1.05407 1.23780 0.89453 0.98819 1.01544 1.43048 1.21368 1.07312 1.40570 0.72100 0.94575 0.88529 0.92026 0.91178 0.87857 0.96067 0.98939 0.92441 0.86176 0.89272 0.83992 0.91720 0.87220 0.90737 0.89122 0.93514 0.75064 0.78212 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.93 5.93 86.38 0.51 3.44 16 3 N -0.60 -25.78 2.46 -826.15 -2.03 -27.81 16 4 C 0.26 14.62 5.16 85.64 0.44 15.06 16 5 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.49 20.68 7.71 87.66 0.68 21.36 16 14 O -0.59 -31.99 15.78 -3.04 -0.05 -32.03 16 15 C 0.06 1.59 4.72 85.56 0.40 2.00 16 16 N -0.70 -19.06 6.12 -517.92 -3.17 -22.23 16 17 C 0.06 1.00 5.30 86.31 0.46 1.45 16 18 C 0.14 2.86 2.88 44.99 0.13 2.99 16 19 H 0.07 1.89 7.58 -2.39 -0.02 1.87 16 20 C -0.15 -2.22 9.48 71.98 0.68 -1.54 16 21 N -0.69 -15.71 4.35 -445.83 -1.94 -17.65 16 22 C 0.61 16.53 7.78 86.66 0.67 17.20 16 23 O -0.57 -18.26 16.76 -4.04 -0.07 -18.33 16 24 C 0.11 2.61 7.95 136.27 1.08 3.70 16 25 N -0.46 -11.46 10.89 -189.53 -2.06 -13.52 16 26 C -0.05 -0.98 11.85 83.88 0.99 0.01 16 27 C 0.00 0.05 12.00 83.53 1.00 1.06 16 28 N -0.52 -9.25 6.14 -188.02 -1.16 -10.41 16 29 H 0.44 6.04 8.96 -92.71 -0.83 5.21 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 33 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 34 H 0.10 2.24 6.44 -2.39 -0.02 2.22 16 35 H 0.02 1.19 8.07 -2.39 -0.02 1.18 16 36 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 39 H 0.09 1.78 7.18 -2.38 -0.02 1.76 16 40 H 0.34 10.47 7.28 -89.69 -0.65 9.82 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.41 8.71 7.83 -92.71 -0.73 7.98 16 47 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 48 H 0.23 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -89.27 405.19 -0.87 -90.15 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -1.21 Total: 28.28 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 8.50 Total: 32.61 kcal Atomic # 7 Polarization: -138.84 SS G_CDS: -10.07 Total: -148.91 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.12 Total: -50.36 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -89.27 -0.87 -90.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483225076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.008 kcal (2) G-P(sol) polarization free energy of solvation -89.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds