Wall clock time and date at job start Tue Mar 31 2020 20:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99980 * 2 1 4 4 C 1.52996 * 109.47160 * 269.99831 * 3 2 1 5 5 C 1.52999 * 109.47320 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47070 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99956 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47127 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00328 * 359.97438 * 8 7 6 10 10 N 1.34788 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99951 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00065 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99853 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99941 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47205 * 59.99441 * 15 13 11 17 17 H 1.48492 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46779 * 300.00049 * 15 13 11 19 19 C 1.34779 * 120.00195 * 179.97438 * 2 1 3 20 20 O 1.21277 * 120.00298 * 179.97438 * 19 2 1 21 21 C 1.50699 * 120.00041 * 0.02562 * 19 2 1 22 22 C 1.50696 * 109.47490 * 179.97438 * 21 19 2 23 23 C 1.39866 * 125.89915 * 125.01392 * 22 21 19 24 24 C 1.35320 * 107.91898 * 179.97438 * 23 22 21 25 25 N 1.34951 * 107.74569 * 359.97438 * 24 23 22 26 26 C 1.46504 * 126.03463 * 180.02562 * 25 24 23 27 27 N 1.30844 * 125.89476 * 304.97479 * 22 21 19 28 28 H 1.08994 * 109.47442 * 269.99863 * 1 2 3 29 29 H 1.08999 * 109.46828 * 30.00602 * 1 2 3 30 30 H 1.09006 * 109.46463 * 150.00093 * 1 2 3 31 31 H 1.08998 * 109.46897 * 29.99728 * 3 2 1 32 32 H 1.09001 * 109.46928 * 149.99301 * 3 2 1 33 33 H 1.09003 * 109.46673 * 299.99760 * 4 3 2 34 34 H 1.08996 * 109.47369 * 59.99536 * 4 3 2 35 35 H 1.08998 * 109.46742 * 299.99901 * 5 4 3 36 36 H 1.09005 * 109.46986 * 59.99894 * 5 4 3 37 37 H 1.00897 * 110.99907 * 56.04246 * 6 5 4 38 38 H 1.09005 * 109.47026 * 300.00430 * 7 6 5 39 39 H 1.08998 * 109.47336 * 59.99787 * 7 6 5 40 40 H 0.97001 * 119.99669 * 359.97438 * 10 8 7 41 41 H 0.97004 * 119.99284 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46974 * 59.99026 * 21 19 2 43 43 H 1.09000 * 109.47028 * 299.99901 * 21 19 2 44 44 H 1.07993 * 126.04141 * 359.97438 * 23 22 21 45 45 H 1.07996 * 126.12765 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46927 * 270.02579 * 26 25 24 47 47 H 1.08994 * 109.47314 * 30.02415 * 26 25 24 48 48 H 1.08998 * 109.46715 * 150.02896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4425 6 7 3.4635 3.4588 -2.8275 7 6 4.1977 4.7305 -2.8668 8 6 4.4309 5.1318 -4.3004 9 8 4.0258 4.4276 -5.2010 10 7 5.0898 6.2735 -4.5820 11 6 5.3015 6.6389 -5.8863 12 1 4.9408 6.0118 -6.6882 13 6 5.9811 7.8155 -6.1765 14 7 6.4205 8.5784 -5.2008 15 14 6.2703 8.3131 -7.9537 16 1 4.9640 8.4742 -8.6415 17 1 7.0119 9.5989 -7.9933 18 1 7.0641 7.2618 -8.6391 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3855 -2.4723 0.0005 22 6 2.3647 -3.6178 0.0005 23 6 2.4035 -4.6635 0.9284 24 6 3.4217 -5.4864 0.5860 25 7 4.0061 -4.9796 -0.5198 26 6 5.1508 -5.5550 -1.2304 27 7 3.3251 -3.8060 -0.8680 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5140 33 1 3.0417 0.9507 -1.9562 34 1 1.5002 1.8406 -1.9564 35 1 2.6293 3.7949 -0.9286 36 1 4.1705 2.9043 -0.9287 37 1 2.5992 3.5245 -3.3440 38 1 3.6152 5.5020 -2.3631 39 1 5.1567 4.6121 -2.3624 40 1 5.4134 6.8369 -3.8618 41 1 6.8946 9.4000 -5.4036 42 1 0.7591 -2.5302 -0.8896 43 1 0.7585 -2.5299 0.8903 44 1 1.7385 -4.7917 1.7696 45 1 3.7138 -6.3878 1.1042 46 1 6.0752 -5.1513 -0.8172 47 1 5.1435 -6.6386 -1.1138 48 1 5.0853 -5.3029 -2.2888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483466070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:58 Heat of formation + Delta-G solvation = 12.450264 kcal Electronic energy + Delta-G solvation = -27636.404567 eV Core-core repulsion = 23535.471989 eV Total energy + Delta-G solvation = -4100.932577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45422 -39.91642 -38.24566 -36.51388 -35.33105 -34.15849 -33.82424 -32.06499 -31.15647 -30.60330 -29.85572 -27.63687 -26.72328 -25.98132 -24.62526 -23.23445 -21.56368 -21.39973 -20.46871 -19.17485 -19.02616 -17.83090 -17.36696 -17.17070 -16.45082 -15.93808 -15.87518 -15.63111 -15.50430 -14.61194 -14.49313 -14.29016 -14.20751 -14.00393 -13.84762 -13.51256 -13.39553 -13.31583 -13.02859 -12.87492 -12.78525 -12.63101 -12.43975 -12.29688 -11.90933 -11.78365 -11.61575 -11.43184 -11.28348 -10.98693 -10.77606 -10.66564 -10.40851 -10.17164 -9.94539 -9.45670 -9.44927 -8.86934 -8.79762 -8.39482 -7.97605 -7.90457 -6.37263 -3.77928 1.68117 2.27014 2.43311 2.50913 2.90723 3.23528 3.28582 3.33450 3.96516 4.13159 4.15724 4.32631 4.42505 4.47834 4.62735 4.77421 4.85074 4.86849 4.93975 5.01634 5.08744 5.12771 5.15662 5.23698 5.29637 5.34129 5.36526 5.37936 5.47042 5.52621 5.57630 5.74337 5.76085 5.86056 6.05586 6.14352 6.18710 6.33019 6.36738 6.43245 6.76596 7.15624 7.31617 7.52967 7.59251 7.75625 8.05545 8.11052 8.66551 9.22411 9.59340 10.11340 10.80505 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.001625 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.423938 B =17229.987527 C =18399.834642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.119 3.881 4 C -0.131 4.131 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.514 3.486 20 O -0.516 6.516 21 C -0.056 4.056 22 C 0.078 3.922 23 C -0.268 4.268 24 C 0.049 3.951 25 N -0.375 5.375 26 C 0.101 3.899 27 N -0.259 5.259 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.348 0.652 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.173 0.827 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -25.291 18.222 33.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.170 4.170 5 C -0.067 4.067 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.301 3.699 20 O -0.390 6.390 21 C -0.098 4.098 22 C -0.089 4.089 23 C -0.297 4.297 24 C -0.097 4.097 25 N -0.158 5.158 26 C -0.040 4.040 27 N -0.082 5.082 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.164 0.836 45 H 0.190 0.810 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.457 -25.603 16.408 32.157 hybrid contribution -0.695 0.989 0.631 1.364 sum -11.152 -24.614 17.039 31.946 Atomic orbital electron populations 1.21839 0.79482 1.03593 1.01837 1.47842 1.06949 1.06076 1.74623 1.21425 0.97741 0.83952 0.97279 1.21886 1.00646 0.97995 0.96496 1.21856 0.99548 0.94977 0.90274 1.60032 1.27355 1.30913 1.11846 1.21667 0.99411 0.90355 0.96731 1.19840 0.84309 0.83378 0.89801 1.90519 1.55037 1.53547 1.47600 1.41859 1.49712 1.19828 1.08743 1.19663 1.33656 1.05546 0.84033 0.87995 1.25258 0.96914 0.96067 0.99740 1.69611 1.38577 1.14268 1.31953 0.85911 0.78573 0.77657 0.82020 1.19954 1.20997 1.19900 1.20398 0.88184 0.84890 0.76455 1.90769 1.13684 1.86920 1.47588 1.20050 0.96011 0.88430 1.05293 1.21531 0.96122 0.96367 0.94894 1.21310 1.04798 0.98453 1.05169 1.22494 0.95770 1.00496 0.90925 1.48571 1.26140 1.19084 1.21982 1.21867 0.85640 0.98050 0.98466 1.77492 1.07973 0.99391 1.23294 0.92427 0.90728 0.90921 0.90631 0.89733 0.90390 0.92001 0.95640 0.90991 0.83316 0.93938 0.89608 0.77453 0.91872 0.87299 0.87089 0.83568 0.81032 0.90629 0.89537 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 10.24 59.85 0.61 1.00 16 2 N -0.62 -5.76 2.87 -181.57 -0.52 -6.28 16 3 C 0.12 1.20 5.41 -4.04 -0.02 1.18 16 4 C -0.13 -1.60 5.80 -26.73 -0.16 -1.75 16 5 C 0.06 0.85 5.69 -3.82 -0.02 0.83 16 6 N -0.67 -11.81 6.13 -115.06 -0.70 -12.51 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.94 7.82 -10.98 -0.09 10.86 16 9 O -0.58 -16.57 15.78 5.55 0.09 -16.49 16 10 N -0.56 -14.85 5.29 -10.96 -0.06 -14.91 16 11 C -0.30 -8.61 9.68 -14.94 -0.14 -8.75 16 12 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 15 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.51 6.02 7.66 -10.98 -0.08 5.94 16 20 O -0.52 -8.56 15.14 5.56 0.08 -8.47 16 21 C -0.06 -0.47 4.83 -29.04 -0.14 -0.61 16 22 C 0.08 0.88 6.01 -82.41 -0.50 0.39 16 23 C -0.27 -2.39 10.72 -40.01 -0.43 -2.82 16 24 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 25 N -0.38 -3.88 4.01 -68.16 -0.27 -4.15 16 26 C 0.10 0.64 11.47 59.85 0.69 1.32 16 27 N -0.26 -3.56 11.92 33.67 0.40 -3.16 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 31 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.08 1.00 7.42 -51.93 -0.39 0.62 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.35 6.20 8.43 -39.29 -0.33 5.87 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.11 0.72 7.40 -51.93 -0.38 0.34 16 43 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -39.50 408.38 -7.33 -46.83 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.60 Total: 11.60 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.60 Total: 9.21 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.43 Total: -65.36 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.17 Total: -24.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -39.50 -7.33 -46.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483466070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.283 kcal (2) G-P(sol) polarization free energy of solvation -39.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds